+E Transcription factors KO #

  Transcription Factors - Pseudomonas aeruginosa PAO1-VE2

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D N296_4252 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D N296_427 helix-turn-helix domain protein K06599 chpD; AraC family transcriptional regulator, chemosensory pili system protein ChpD D N296_4359 helix-turn-helix domain protein K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D N296_255 cupin domain protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D N296_577 cupin domain protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D N296_2407 helix-turn-helix domain protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D N296_1760 helix-turn-helix domain protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D N296_4027 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D N296_773 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D N296_2778 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D N296_3719 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D N296_2183 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D N296_5575 helix-turn-helix domain protein K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D N296_921 argR; transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D N296_5565 helix-turn-helix domain protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D N296_4316 helix-turn-helix domain protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D N296_1222 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D N296_3972 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D N296_2456 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D N296_810 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D N296_5084 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D N296_5473 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D N296_158 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D N296_3711 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D N296_5524 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D N296_4507 argP; transcriptional regulator, ArgP family protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D N296_2118 bacterial regulatory helix-turn-helix, lysR family protein K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D N296_1802 bacterial regulatory helix-turn-helix, lysR family protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D N296_223 bacterial regulatory helix-turn-helix, lysR family protein K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator D N296_3024 bacterial regulatory helix-turn-helix, lysR family protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D N296_2061 bacterial regulatory helix-turn-helix, lysR family protein K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D N296_4241 bacterial regulatory helix-turn-helix, lysR family protein K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D N296_2563 lysR substrate binding domain protein K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D N296_2120 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D N296_1035 bacterial regulatory helix-turn-helix, lysR family protein K19735 mvfR; LysR family transcriptional regulator, quorum-sensing system regulator MvfR D N296_5614 bacterial regulatory helix-turn-helix, lysR family protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D N296_139 bacterial regulatory helix-turn-helix, lysR family protein K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D N296_5624 bacterial regulatory helix-turn-helix, lysR family protein K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator D N296_2581 bacterial regulatory helix-turn-helix, lysR family protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D N296_1911 bacterial regulatory helix-turn-helix, lysR family protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D N296_38 bacterial regulatory helix-turn-helix, lysR family protein K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator C DeoR family D N296_3707 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D N296_1532 hypothetical protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D N296_2011 periplasmic binding s and sugar binding domain of LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D N296_2332 periplasmic binding s and sugar binding domain of LacI family protein K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D N296_3686 fruR; fructose transport system repressor FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D N296_2393 gntR; transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D N296_3501 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D N296_5278 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D N296_3881 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D N296_2372 UTRA domain protein K03710 K03710; GntR family transcriptional regulator D N296_4934 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D N296_126 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D N296_5536 bacterial regulatory s, gntR family protein K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D N296_274 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D N296_4297 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D N296_5617 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D N296_5075 bacterial regulatory s, gntR family protein K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator C TetR/AcrR family D N296_5559 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D N296_447 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D N296_1546 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D N296_172 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D N296_1922 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D N296_866 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D N296_2269 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D N296_5000 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D N296_2862 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D N296_1280 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D N296_3802 bacterial regulatory s, tetR family protein K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D N296_2084 putative transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D N296_3844 bacterial regulatory s, tetR family protein K18130 nalC; TetR/AcrR family transcriptional regulator, transcriptional repressor NalC D N296_3699 bacterial regulatory s, tetR family protein K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D N296_4752 iclR helix-turn-helix domain protein K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D N296_4748 winged helix-turn-helix DNA-binding family protein K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D N296_5060 bacterial regulatory s, tetR family protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D N296_2988 bacterial regulatory s, tetR family protein K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator C Lrp/AsnC family D N296_2654 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D N296_4654 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D N296_5488 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D N296_4950 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D N296_4094 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D N296_2318 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D N296_2092 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D N296_1472 lasR; transcriptional activator protein lasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D N296_3600 sdiA; regulatory protein SdiA K18099 rhlR; LuxR family transcriptional regulator, quorum-sensing system regulator RhlR D N296_1176 sigma-70, region 4 family protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D N296_1807 sigma-70, region 4 family protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D N296_4050 bacterial regulatory s, luxR family protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D N296_259 marR family protein K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D N296_3460 slyA; transcriptional regulator slyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D N296_435 mexR; multidrug resistance operon repressor K18131 mexR; MarR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D N296_1648 marR family protein K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D N296_2951 marR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D N296_2927 marR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D N296_4944 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D N296_2346 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D N296_4814 merR regulatory family protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D N296_4929 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D N296_2457 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D N296_5686 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D N296_242 bacterial transcriptional regulator family protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D N296_161 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D N296_4483 marR family protein K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator C CRP/FNR family D N296_666 vfr; cyclic AMP receptor-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D N296_281 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D N296_1586 cyclic nucleotide-binding domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D N296_539 cyclic nucleotide-binding domain protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D N296_3940 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D N296_2350 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D N296_5625 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D N296_3295 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D N296_4416 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D N296_5023 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D N296_1134 AAA domain family protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D N296_4279 acoR; acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D N296_4150 bacterial regulatory, Fis family protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D N296_2433 AAA domain family protein K11917 sfa3; sigma-54 dependent transcriptional regulator D N296_1709 AAA domain family protein K11914 sfa2; sigma-54 dependent transcriptional regulator D N296_2746 AAA domain family protein K12266 norR; anaerobic nitric oxide reductase transcription regulator D N296_1086 bacterial regulatory, Fis family protein K02647 cdaR; carbohydrate diacid regulator D N296_1234 AAA domain family protein K06714 rocR; arginine utilization regulatory protein D N296_499 ModE molybdate transport repressor domain protein K02019 modE; molybdate transport system regulatory protein D N296_3990 sensory box protein K21829 dauR; D-arginine utilization repressor D N296_2884 helix-turn-helix family protein K07727 K07727; putative transcriptional regulator D N296_5588 helix-turn-helix family protein K07727 K07727; putative transcriptional regulator D N296_4207 helix-turn-helix family protein K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D N296_808 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D N296_3511 4Fe-4S binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D N296_884 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D N296_5749 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D N296_901 ACT domain protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D N296_2522 AAA domain family protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D N296_1042 ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor D N296_5454 rnk; prokaryotic transcription elongation factor GreA/GreB K06140 rnk; regulator of nucleoside diphosphate kinase D N296_414 pyrR; bifunctional protein pyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D N296_4314 putative FMN-binding domain protein K07734 paiB; transcriptional regulator D N296_416 hypothetical protein K07735 algH; putative transcriptional regulator D N296_4886 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D N296_5723 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D N296_4186 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D N296_4731 sigma-54 interaction domain protein K14414 rtcR; transcriptional regulatory protein RtcR D N296_4566 mraZ family protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0