+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Pasteurella aerogenes

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D NCTC13378_00089 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D NCTC13378_00619 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C NCTC13378_00090 era; GTP-binding protein Era K03595 era; GTPase C NCTC13378_01456 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C NCTC13378_00556 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C NCTC13378_00611 nusA; transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA C NCTC13378_01043 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C NCTC13378_02071 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D NCTC13378_01602 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D NCTC13378_00133 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D NCTC13378_01571 rsmB; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D NCTC13378_00325 rsmC; ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D NCTC13378_00252 rsmD; ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D NCTC13378_01865 rsmE; ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D NCTC13378_01931 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D NCTC13378_01322 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D NCTC13378_01063 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D NCTC13378_01982 smtA; metallothionein SmtA K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D NCTC13378_01789 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D NCTC13378_01072 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D NCTC13378_01681 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D NCTC13378_01563 putative DNA methylase, N-6 adenine-specific K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D NCTC13378_01202 rlmL; S-adenosyl-L-dependent RNA methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D NCTC13378_00447 rlmM; putative ribosomal RNA large subunit methyltransferase M, RmmM subfamily K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D NCTC13378_00353 rlmN; ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D NCTC13378_01861 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D NCTC13378_01431 rumB; 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D NCTC13378_00835 rluA_2; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D NCTC13378_00216 rluA_1; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D NCTC13378_01004 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D NCTC13378_00213 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D NCTC13378_01869 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D NCTC13378_01826 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D NCTC13378_01613 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C NCTC13378_00323 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C NCTC13378_01188 rimK; RimK protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C NCTC13378_01579 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C NCTC13378_00064 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C NCTC13378_00927 YcaO-like family K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C NCTC13378_00205 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C NCTC13378_01007 prmB; adenine-specific methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C NCTC13378_00600 transcription factor jumonji/aspartyl beta-hydroxylase family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C NCTC13378_00089 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C NCTC13378_00212 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C NCTC13378_01157 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C NCTC13378_01867 yqgF; putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C NCTC13378_02189 deaD; cold-shock DEAD box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C NCTC13378_02112 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C NCTC13378_00090 era; GTP-binding protein Era K03595 era; GTPase C NCTC13378_00620 rsgA; ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C NCTC13378_01209 engA; GTP-binding protein EngA K03977 engA; GTPase C NCTC13378_01456 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] C NCTC13378_01153 hflX; GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C NCTC13378_01849 rimN; ribosome maturation factor RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C NCTC13378_00166 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C NCTC13378_00614 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C NCTC13378_00610 rimP; Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP C NCTC13378_01682 ybeB; ribosome-associated, Iojap-like family protein K09710 ybeB; ribosome-associated protein C NCTC13378_01327 putative metalloprotease K07042 ybeY; probable rRNA maturation factor C NCTC13378_01073 RNA-binding, CRM domain-containing protein K07574 yhbY; RNA-binding protein C NCTC13378_01369 yjgA; ribosome-associated, YjgA family protein K09889 yjgA; ribosome-associated protein C NCTC13378_01520 raiA; ribosome-associated inhibitor A K05809 raiA; ribosome-associated inhibitor A C NCTC13378_00595 engD; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase C NCTC13378_00229 Uncharacterized ACR, COG1399 K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024