+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pantoea ananatis AJ13355

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PAJ_0513 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PAJ_0480 phrB; deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PAJ_2195 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PAJ_2461 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PAJ_1120 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PAJ_0076 mutT; mutator MutT protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAJ_3124 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PAJ_0513 ogt; methylated-DNA--protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PAJ_0480 phrB; deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PAJ_1891 alkB; alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E PAJ_2195 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PAJ_2636 mug; G/U mismatch-specific DNA glycosylase Mug K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E PAJ_0933 uracil-DNA glycosylase family protein hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PAJ_2499 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PAJ_0512 ada; putative ADA regulatory protein Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PAJ_2461 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PAJ_3231 tag; DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PAJ_3119 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PAJ_0488 nei; endonuclease VIII Nei K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E PAJ_1120 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PAJ_1422 xthA; exodeoxyribonuclease III XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PAJ_1849 nfo; probable endonuclease IV Nfo K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E PAJ_3384 nfi; endonuclease V Nfi K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E PAJ_2404 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PAJ_3138 yicF; DNA ligase YicF K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAJ_2044 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PAJ_3158 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PAJ_3431 uvrA; UvrABC system protein A UvrA K03701 uvrA; excinuclease ABC subunit A E PAJ_0540 uvrB; UvrABC system protein B UvrB K03702 uvrB; excinuclease ABC subunit B E PAJ_0743 uvrC; UvrABC system protein C UvrC K03703 uvrC; excinuclease ABC subunit C E PAJ_1030 cho; exconuclease Cho K05984 cho; excinuclease Cho [EC:3.1.25.-] E PAJ_3329 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PAJ_3158 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E PAJ_3138 yicF; DNA ligase YicF K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAJ_2044 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PAJ_3376 rpoB; DNA-directed RNA polymerase beta chain RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PAJ_3377 rpoC; DNA-directed RNA polymerase beta' chain RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PAJ_2821 rpoA; DNA-directed RNA polymerase alpha chain RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PAJ_3140 rpoZ; DNA-directed RNA polymerase omega chain RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PAJ_0849 mfd; transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PAJ_2314 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PAJ_2766 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E PAJ_2393 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E PAJ_1751 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PAJ_2138 xseA; probable exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PAJ_0304 xseB; probable exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E PAJ_1500 exoX; exodeoxyribonuclease X exoX K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E PAJ_0154 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PAJ_3250 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PAJ_3643 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PAJ_0449 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PAJ_0835 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PAJ_0176 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PAJ_0354 dnaX; DNA polymerase III tau subunit DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E PAJ_3750 holD; DNA polymerase III psi subunit HolD K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E PAJ_1499 holE; DNA polymerase III theta subunit HolE K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E PAJ_3138 yicF; DNA ligase YicF K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAJ_2044 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PAJ_3329 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PAJ_3432 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein E PAJ_2890 dam; DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PAJ_1627 vsr; very short patch repair protein Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PAJ_2382 recB; exodeoxyribonuclease V beta chain RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PAJ_2384 recC; exodeoxyribonuclease V gamma chain RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PAJ_2381 recD; exodeoxyribonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PAJ_2309 recA; protein RecA K03553 recA; recombination protein RecA E PAJ_1515 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PAJ_1514 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PAJ_1516 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PAJ_3070 priA; primosomal protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PAJ_2750 priB; primosomal replication protein Prib K02686 priB; primosomal replication protein N E PAJ_0351 priC; primosomal replication protein N' PriC K04067 priC; primosomal replication protein N'' E PAJ_3229 dnaT; primosomal protein I DnaT K02317 dnaT; DNA replication protein DnaT E PAJ_1751 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PAJ_0276 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PAJ_0277 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PAJ_2309 recA; protein RecA K03553 recA; recombination protein RecA E PAJ_3755 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PAJ_3249 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E PAJ_3144 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PAJ_2404 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PAJ_2182 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PAJ_0356 recR; recombination protein RecR K06187 recR; recombination protein RecR E PAJ_2198 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PAJ_0273 rdgC; recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC E PAJ_1515 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PAJ_1514 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PAJ_1516 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PAJ_1871 yejH; helicase YejH K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E PAJ_0276 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PAJ_0277 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E PAJ_3659 yjgR; ATPase YjgR K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PAJ_1902 gyrA; DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PAJ_3248 gyrB; DNA gyrase subunit B GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PAJ_1379 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PAJ_3386 hupA; DNA-binding protein HU-alpha HupA K05787 hupA; DNA-binding protein HU-alpha F PAJ_0326 hupB; DNA-binding protein HU-beta HupB K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PAJ_2404 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PAJ_2182 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PAJ_0356 recR; recombination protein RecR K06187 recR; recombination protein RecR F PAJ_3138 yicF; DNA ligase YicF K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F PAJ_2044 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PAJ_2802 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PAJ_1049 ihfA; integration host factor alpha-subunit IhfA K04764 ihfA; integration host factor subunit alpha F PAJ_0677 ihfB; integration host factor beta-subunit IhfB K05788 ihfB; integration host factor subunit beta E Supressor F PAJ_1751 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PAJ_3337 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PAJ_3431 uvrA; UvrABC system protein A UvrA K03701 uvrA; excinuclease ABC subunit A F PAJ_0540 uvrB; UvrABC system protein B UvrB K03702 uvrB; excinuclease ABC subunit B F PAJ_1413 hns; DNA-binding protein H-NS Hns K03746 hns; DNA-binding protein H-NS F PAJ_0612 hns; DNA-binding protein H-NS Hns K03746 hns; DNA-binding protein H-NS F PAJ_p0052 hns; DNA-binding protein HNS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PAJ_0215 dinB; DNA polymerase IV DinB K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PAJ_0773 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D PAJ_1106 umuC; nucleotidyl transferase/DNA polymerase DNA repair protein UmuC K03502 umuC; DNA polymerase V D PAJ_2530 umuC; protein UmuC K03502 umuC; DNA polymerase V D PAJ_2523 UV protection protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D PAJ_1105 umuD; SOS-response transcriptional repressor UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PAJ_2309 recA; protein RecA K03553 recA; recombination protein RecA D PAJ_3416 lexA; LexA repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D PAJ_2198 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PAJ_0037 polB; DNA polymerase II PolB K02336 polB; DNA polymerase II [EC:2.7.7.7] D PAJ_3432 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein D PAJ_0798 dinI; DNA-damage-inducible protein I DinI K12149 dinI; DNA-damage-inducible protein I D PAJ_2308 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PAJ_3302 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PAJ_0721 helD; helicase IV HelD K03658 helD; DNA helicase IV [EC:5.6.2.4] D PAJ_0579 dinG; probable ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PAJ_1456 yoaA; probable ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D PAJ_0076 mutT; mutator MutT protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAJ_3124 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PAJ_2265 nrdE; ribonucleoside-diphosphate reductase 2 alpha subunit NrdE K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAJ_1904 nrdA; ribonucleoside-diphosphate reductase 1 alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAJ_1905 nrdB; ribonucleoside-diphosphate reductase 1 beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PAJ_2266 nrdF; ribonucleoside-diphosphate reductase 2 beta subunit NrdF K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024