+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Photorhabdus akhurstii

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D B0X70_17190 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D B0X70_23155 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C B0X70_17185 GTPase Era K03595 era; GTPase C B0X70_22865 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C B0X70_04735 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C B0X70_22805 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C B0X70_19390 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C B0X70_02055 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D B0X70_14655 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D B0X70_03520 ksgA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D B0X70_23775 16S rRNA m5C967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D B0X70_03030 16S rRNA (guanine(1207)-N(2))-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D B0X70_20850 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D B0X70_05975 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D B0X70_00225 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D B0X70_18450 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D B0X70_20435 rRNA (cytidine-2'-O-)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D B0X70_00605 16S rRNA (guanine(1516)-N(2))-methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D B0X70_13775 23S rRNA (guanine(745)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D B0X70_23045 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D B0X70_22845 23S rRNA (uridine(2552)-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D B0X70_06610 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D B0X70_01790 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D B0X70_09025 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D B0X70_03740 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D B0X70_06980 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D B0X70_04895 rumA; 23S rRNA (uracil(1939)-C(5))-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D B0X70_08235 rumB; 23S rRNA (uracil(747)-C(5))-methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D B0X70_03545 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D B0X70_12450 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D B0X70_14510 23S rRNA pseudouridine(955/2504/2580) synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D B0X70_06440 23S rRNA pseudouridine(1911/1915/1917) synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D B0X70_14285 23S rRNA pseudouridine(2457) synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D B0X70_06490 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C B0X70_03040 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C B0X70_10800 ribosomal protein S5 alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C B0X70_06390 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C B0X70_08400 ribosomal protein S12 methylthiotransferase accessory factor YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C B0X70_20755 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C B0X70_16475 ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C B0X70_14320 50S ribosomal protein L16 arginine hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C B0X70_17190 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C B0X70_14515 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C B0X70_20680 ribonuclease E/G K08301 rng; ribonuclease G [EC:3.1.26.-] C B0X70_05960 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C B0X70_22770 DEAD/DEAH family ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C B0X70_17235 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C B0X70_17185 GTPase Era K03595 era; GTPase C B0X70_23160 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C B0X70_07015 ribosome biogenesis GTPase Der K03977 engA; GTPase C B0X70_22865 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C B0X70_23075 GTPase HflX K03665 hflX; GTPase B Other maturation factors C B0X70_23750 L-threonylcarbamoyladenylate synthase TsaC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C B0X70_01200 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C B0X70_22795 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C B0X70_22810 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C B0X70_02760 ribosome-associated protein K14761 rlbA; ribosome-associated protein C B0X70_06615 ribosome silencing factor K09710 ybeB; ribosome-associated protein C B0X70_06675 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C B0X70_22850 RNA-binding protein K07574 yhbY; RNA-binding protein C B0X70_09050 ribosome modulation factor K03812 rmf; ribosome modulation factor C B0X70_20620 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C B0X70_06430 ribosomal subunit interface protein K05809 raiA; ribosome-associated inhibitor A C B0X70_10555 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C B0X70_14500 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024