+D GENES KO #

  KEGG Orthology (KO) - Candidatus Phytoplasma australiense

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:pal00010] D PA0166 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PA0164 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D PA0512 fba; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PA0514 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PA0510 gapA; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PA0511 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PA0060 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PA0059 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PA0061 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PA0686 pdhA; Pyruvate dehydrogenase E1 component,alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D PA0687 pdhB; Pyruvate dehydrogenase E1 comp, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D PA0688 pdhC; Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00020 Citrate cycle (TCA cycle) [PATH:pal00020] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PA0686 pdhA; Pyruvate dehydrogenase E1 component,alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D PA0687 pdhB; Pyruvate dehydrogenase E1 comp, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D PA0688 pdhC; Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:pal00030] D PA0166 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PA0512 fba; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PA0164 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions C 00051 Fructose and mannose metabolism [PATH:pal00051] D PA0164 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D PA0512 fba; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PA0514 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism D PA0164 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:pal00500] D PA0221 gtfA; Sucrose phosphorylase (Glucosyltransferase-A) K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7] D PA0166 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism D PA0166 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00620 Pyruvate metabolism [PATH:pal00620] D PA0686 pdhA; Pyruvate dehydrogenase E1 component,alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D PA0687 pdhB; Pyruvate dehydrogenase E1 comp, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D PA0688 pdhC; Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PA0121 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PA0274 pduL; Putative propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D PA0061 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PA0769 sfcA; Malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pal00630] D PA0172 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00640 Propanoate metabolism [PATH:pal00640] D PA0121 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PA0274 pduL; Putative propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00650 Butanoate metabolism C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism D PA0514 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation D PA0602 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:pal00710] D PA0511 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PA0510 gapA; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PA0512 fba; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PA0514 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00720 Other carbon fixation pathways [PATH:pal00720] D PA0274 pduL; Putative propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D PA0121 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:pal00680] D PA0172 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PA0059 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PA0512 fba; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PA0164 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D PA0121 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PA0060 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] C 00910 Nitrogen metabolism C 00920 Sulfur metabolism D PA0021 Phosphoesterase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D PA0019 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis D PA0099 acpP; Acyl carrier protein (ACP) K02078 acpP; acyl carrier protein C 00062 Fatty acid elongation C 00071 Fatty acid degradation C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:pal00561] D PA0632 plsX; Fatty acid/phospholipid biosynthesis enzyme K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D PA0266 Putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PA0086 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:pal00564] D PA0684 gpsA; Glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D PA0266 Putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PA0086 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PA0515 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D PA0626 pssA; Phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D PA0627 psd; Phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D PA0816 pgsA; Phosphatidylglycerophosphate synthase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:pal00230] D PA0105 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D PA0056 nrdA; Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PA0112 nrdF; Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PA0767 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D PA0639 Putative metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D PA0566 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:pal00240] D PA0517 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D PA0628 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D PA0781 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D PA0639 Putative metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D PA0056 nrdA; Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PA0112 nrdF; Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PA0169 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0304 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0365 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0373 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0735 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0039 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0071 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0807 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0195 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0227 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0324 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0425 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0431 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PA0520 dut; DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PA0713 tdk; Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D PA0084 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism C 00260 Glycine, serine and threonine metabolism [PATH:pal00260] D PA0172 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PA0060 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PA0626 pssA; Phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] C 00270 Cysteine and methionine metabolism D PA0004 Putative C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C 00280 Valine, leucine and isoleucine degradation [PATH:pal00280] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00290 Valine, leucine and isoleucine biosynthesis C 00300 Lysine biosynthesis C 00310 Lysine degradation D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00220 Arginine biosynthesis C 00330 Arginine and proline metabolism C 00340 Histidine metabolism C 00350 Tyrosine metabolism C 00360 Phenylalanine metabolism C 00380 Tryptophan metabolism D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:pal00430] D PA0274 pduL; Putative propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D PA0121 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:pal00450] D PA0545 csdB; Selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D PA0128 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D PA0172 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism C 00480 Glutathione metabolism [PATH:pal00480] D PA0129 pepA; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:pal00730] D PA0601 thiI; Thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PA0348 engC; GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D PA0566 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:pal00740] D PA0451 ribF; Putative riboflavin kinase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] C 00750 Vitamin B6 metabolism C 00760 Nicotinate and nicotinamide metabolism D PA0763 nadE; NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] C 00770 Pantothenate and CoA biosynthesis D PA0838 acpS; Phosphopantetheinyl transferase (holo-ACP synthase) K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] C 00780 Biotin metabolism C 00785 Lipoic acid metabolism [PATH:pal00785] D PA0537 lplA; Lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PA0686 pdhA; Pyruvate dehydrogenase E1 component,alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D PA0687 pdhB; Pyruvate dehydrogenase E1 comp, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D PA0688 pdhC; Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00790 Folate biosynthesis [PATH:pal00790] D PA0085 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] C 00670 One carbon pool by folate [PATH:pal00670] D PA0085 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D PA0172 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PA0084 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] C 00830 Retinol metabolism C 00860 Porphyrin metabolism D PA0498 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D PA0099 acpP; Acyl carrier protein (ACP) K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:pal03020] D PA0665 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PA0664 rpoC; DNA-directed RNA polymerase beta chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PA0560 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PA0106 rpoZ; Putative DNA-directed RNA polymerase,omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D PA0625 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:pal03010] D PA0519 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PA0581 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PA0088 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D PA0570 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PA0152 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D PA0662 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PA0573 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PA0497 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PA0588 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PA0561 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PA0663 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PA0562 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PA0574 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PA0494 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D PA0549 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D PA0578 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PA0150 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D PA0583 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PA0599 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D PA0618 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D PA0668 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PA0584 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D PA0587 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PA0586 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D PA0575 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PA0572 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PA0666 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D PA0667 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D PA0669 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PA0496 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PA0577 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PA0568 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D PA0580 rplP; 50S ribosomal protein L16/L10E K02878 RP-L16; large subunit ribosomal protein L16 D PA0559 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D PA0571 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D PA0547 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D PA0097 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D PA0594 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D PA0582 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PA0585 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PA0576 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PA0592 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D PA0715 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D PA0579 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PA0569 rpmD; Ribosomal protein L30/L7E K02907 RP-L30; large subunit ribosomal protein L30 D PA0714 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D PA0589 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D PA0680 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D PA0677 rpmH; Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D PA0096 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D PA0563 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D 23S_rRNA-2 23S_RNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-1 23S_rRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:pal00970] D tRNA-Ala tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Arg-2 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-1 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Asn tRNA-Asn K14220 tRNA-Asn; tRNA Asn D tRNA-Asp tRNA-Asp K14221 tRNA-Asp; tRNA Asp D tRNA-Cys tRNA-Cys K14222 tRNA-Cys; tRNA Cys D tRNA-Gln-1 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln D tRNA-Gln-2 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln D tRNA-Glu tRNA-Glu K14224 tRNA-Glu; tRNA Glu D tRNA-Gly-2 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-Gly-1 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-His-1 tRNA-His; tRNA-His K14226 tRNA-His; tRNA His D tRNA-His-2 tRNA-His; tRNA-His K14226 tRNA-His; tRNA His D tRNA-Ile-1 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile D tRNA-Ile-2 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile D tRNA-Leu-5 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-1 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-3 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-4 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-2 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Lys tRNA-Lys K14229 tRNA-Lys; tRNA Lys D tRNA-Met-1 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Met-2 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Met-3 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Phe tRNA-Phe K14231 tRNA-Phe; tRNA Phe D tRNA-Pro tRNA-Pro K14232 tRNA-Pro; tRNA Pro D tRNA-Ser-3 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-2 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-1 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Thr-2 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Thr-1 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Pseudo tRNAscan-SE-score 37.79; transfer RNA-Pseudo K14235 tRNA-Trp; tRNA Trp D tRNA-Trp tRNA-Trp K14235 tRNA-Trp; tRNA Trp D tRNA-Tyr tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D tRNA-Val tRNA-Val K14237 tRNA-Val; tRNA Val D PA0498 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PA0694 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PA0509 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PA0486 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PA0026 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PA0615 GRS1; Glycyl-tRNA synthetase, class II K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PA0018 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PA0596 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PA0499 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PA0128 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PA0142 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PA0104 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PA0346 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PA0536 lysU; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PA0540 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PA0678 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PA0485 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PA0532 pheS; Phenylalanyl-tRNA synthetase alpha-chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PA0531 pheT; Phenylalanyl-tRNA synthetase beta-chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PA0546 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PA0542 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:pal03060] D PA0567 secY; SecY protein K03076 secY; preprotein translocase subunit SecY D PA0675 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PA0551 secA; Preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PA0826 ffh; Signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PA0827 ftsY; Signal recognition particle-docking protein K03110 ftsY; fused signal recognition particle receptor D PA0522 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:pal04122] D PA0766 trmU; tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D PA0601 thiI; Thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:pal03018] D PA0059 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PA0674 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D PA0155 DEAD/DEAH box helicase-like K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PA0640 Metal-dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-] D PA0011 Metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D PA0006 Putative hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-] D PA0164 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D PA0555 dnaK; Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PA0761 groL; Chaperonin GroEL (Hsp60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PA0711 pcnB; Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:pal03030] D PA0535 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PA0541 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D PA0623 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PA0168 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PA0145 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PA0002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PA0148 dnaC; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0361 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0037 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0073 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0094 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0193 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0210 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0225 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0255 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0326 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0371 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0732 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0809 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0614 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D PA0360 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D PA0814 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0151 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0724 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0317 Putative prophage-derived single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0408 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0791 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0707 rnhC; Ribonuclease HII family protein K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] D PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:pal03410] D PA0521 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D PA0823 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:pal03420] D PA0699 uvrA; Excinuclease ATPase subunit A K03701 uvrA; excinuclease ABC subunit A D PA0453 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B D PA0452 uvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C D PA0693 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:pal03430] D PA0693 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PA0814 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0151 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0724 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0317 Putative prophage-derived single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0408 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0791 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0535 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PA0541 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D PA0002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PA0623 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PA0145 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PA0168 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PA0250 dam; Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:pal03440] D PA0814 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0151 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0724 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0317 Putative prophage-derived single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0408 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0791 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0535 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PA0541 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D PA0002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PA0623 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PA0145 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PA0168 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PA0123 priA; Primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:pal02010] D PA0132 potD; ABC-type spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D PA0133 potC; ABC-type spermidine/putrescine transport system, permease component II K11070 potC; spermidine/putrescine transport system permease protein D PA0134 potB; ABC-type spermidine/putrescine transport system, permease component I K11071 potB; spermidine/putrescine transport system permease protein D PA0135 potA; ABC-type spermidine/putrescine transport systems, ATPase component K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D PA0025 malK; ABC-type sugar transport system, ATPase component K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PA0775 glnQ; ABC-type amino acid transport system,ATPase component K17076 lysY; putative lysine transport system ATP-binding protein D PA0455 Putative ABC-type metal ion transport system, periplasmic component/surface antigen (may be involved in bacterial virulence) K02073 metQ; D-methionine transport system substrate-binding protein D PA0491 metQ; Putative D-methionine transport system substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D PA0454 nlpA; ABC-type uncharacterized transport system, periplasmic component K02073 metQ; D-methionine transport system substrate-binding protein D PA0492 metl; D-methionine transport system permease protein K02072 metI; D-methionine transport system permease protein D PA0490 metN; D-methionine transport system ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D PA0481 znuA; ABC-type Zn/Mn transport system periplasmic component/surface adhesion K11707 troA; manganese/zinc/iron transport system substrate-binding protein D PA0483 znuB; ABC-type Zn/Mn transport system,permease component K11708 troC; manganese/zinc/iron transport system permease protein D PA0484 znuB; ABC-type Zn/Mn transport system,permease component K11709 troD; manganese/zinc/iron transport system permease protein D PA0482 znuC; ABC-type Zn/Mn transport system, ATPase component K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D PA0173 cbiQ; ABC-type cobalt transport system,permease component K16785 ecfT; energy-coupling factor transport system permease protein D PA0139 cbiQ; ABC-type cobalt transport system,permease protein K16785 ecfT; energy-coupling factor transport system permease protein D PA0175 cbiO2; ABC-type cobalt import ATP-binding protein cbiO 2 K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PA0174 cbiO2; ABC-type Cobalt import ATP-binding protein CbiO 2 K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PA0114 mdlB; ABC-type multidrug/protein/lipid transport system, ATPase component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D PA0115 Putative ABC transporter subunit K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:pal03070] D PA0567 secY; SecY protein K03076 secY; preprotein translocase subunit SecY D PA0675 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PA0551 secA; Preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PA0827 ftsY; Signal recognition particle-docking protein K03110 ftsY; fused signal recognition particle receptor D PA0826 ffh; Signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:pal02020] D PA0001 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D PA0769 sfcA; Malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D PA0768 citS; Putative malate/citrate symporter K11616 maeN; malate:Na+ symporter C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:pal02024] D PA0755 ABC-type peptide/nickel transport system substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PA0756 ABC-type peptide/nickel transport system substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PA0757 ABC-type peptide/nickel transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D PA0754 ABC-type peptide/nickel transport system ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D PA0675 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PA0567 secY; SecY protein K03076 secY; preprotein translocase subunit SecY D PA0551 secA; Preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PA0827 ftsY; Signal recognition particle-docking protein K03110 ftsY; fused signal recognition particle receptor D PA0826 ffh; Signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly D PA0613 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D PA0059 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:pal01000] C 01001 Protein kinases C 01009 Protein phosphatases and associated proteins [BR:pal01009] D PA0164 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 01002 Peptidases and inhibitors [BR:pal01002] D PA0495 thiJ; Putative intracellular protease/amidase K03152 thiJ; protein deglycase [EC:3.5.1.124] D PA0129 pepA; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D PA0565 map; Methionine aminopeptidase (MAP) K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D PA0679 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D PA0488 hflB; ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0539 hflB; ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0235 Putative IMP dehydrogenase/GMP reductase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0136 Putative peptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0068 Putative IMP dehydrogenase/GMP reductase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0799 Putative IMP dehydrogenase/GMP reductase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0701 lon; ATP-dependent Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D PA0522 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D PA0702 pmbA; Pmba-related protein K03592 pmbA; PmbA protein D PA0703 tldD; Zn-dependent proteases, TldD K03568 tldD; TldD protein C 01003 Glycosyltransferases C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins C 01004 Lipid biosynthesis proteins [BR:pal01004] D PA0632 plsX; Fatty acid/phospholipid biosynthesis enzyme K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D PA0266 Putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PA0086 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:pal01006] D PA0638 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:pal01007] D PA0498 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PA0694 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PA0546 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PA0542 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PA0499 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PA0540 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PA0128 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PA0346 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PA0142 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PA0104 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PA0536 lysU; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PA0486 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PA0026 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PA0485 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PA0615 GRS1; Glycyl-tRNA synthetase, class II K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PA0596 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PA0678 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PA0018 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PA0509 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PA0532 pheS; Phenylalanyl-tRNA synthetase alpha-chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PA0531 pheT; Phenylalanyl-tRNA synthetase beta-chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:pal03000] D PA0004 Putative C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PA0557 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor C 03021 Transcription machinery [BR:pal03021] D PA0560 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PA0665 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PA0664 rpoC; DNA-directed RNA polymerase beta chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PA0625 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta D PA0106 rpoZ; Putative DNA-directed RNA polymerase,omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D PA0613 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D PA0606 nusA; Transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA D PA0835 nusB; Transcription termination factor K03625 nusB; transcription antitermination protein NusB D PA0670 nusG; Transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG D PA0506 greA; Transcription elongation factor K03624 greA; transcription elongation factor GreA C 03019 Messenger RNA biogenesis [BR:pal03019] D PA0631 rnc; DsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3] D PA0011 Metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D PA0006 Putative hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-] D PA0640 Metal-dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-] D PA0710 cbf1; Cmp binding factor 1 K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D PA0155 DEAD/DEAH box helicase-like K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PA0449 ATP-dependent RNA helicase, DEAD-DEAH box family K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] D PA0059 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PA0674 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D PA0164 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D PA0555 dnaK; Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PA0761 groL; Chaperonin GroEL (Hsp60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PA0711 pcnB; Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] C 03041 Spliceosome C 03011 Ribosome [BR:pal03011] D PA0519 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PA0581 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PA0088 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D PA0570 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PA0152 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D PA0662 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PA0573 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PA0497 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PA0588 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PA0561 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PA0663 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PA0562 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PA0574 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PA0494 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D PA0549 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D PA0578 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PA0150 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D PA0583 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PA0599 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D PA0618 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D PA0668 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PA0584 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D PA0587 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PA0586 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D PA0575 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PA0572 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PA0667 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D PA0669 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PA0666 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D PA0496 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PA0577 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PA0568 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D PA0580 rplP; 50S ribosomal protein L16/L10E K02878 RP-L16; large subunit ribosomal protein L16 D PA0559 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D PA0571 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D PA0547 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D PA0097 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D PA0594 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D PA0582 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PA0585 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PA0576 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PA0592 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D PA0715 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D PA0579 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PA0569 rpmD; Ribosomal protein L30/L7E K02907 RP-L30; large subunit ribosomal protein L30 D PA0714 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D PA0589 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D PA0680 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D PA0677 rpmH; Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D PA0096 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D PA0563 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D 23S_rRNA-2 23S_RNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-1 23S_rRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:pal03009] D PA0631 rnc; DsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3] D PA0616 era; Glycyl-tRNA synthetase K03595 era; GTPase D PA0591 obg; Putative GTPase K03979 obgE; GTPase [EC:3.6.5.-] D PA0606 nusA; Transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA D PA0835 nusB; Transcription termination factor K03625 nusB; transcription antitermination protein NusB D PA0670 nusG; Transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG D PA0272 ksgA; Dimethyladenosine transferase (S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D PA0503 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D PA0645 gidB; Glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D PA0107 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D PA0167 Putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D PA0672 yacO; tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D PA0782 rsuA; 16S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D PA0489 rluA; Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D PA0508 ruvX; Putative holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D PA0155 DEAD/DEAH box helicase-like K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PA0449 ATP-dependent RNA helicase, DEAD-DEAH box family K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] D PA0348 engC; GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D PA0780 engA; GTP-binding protein K03977 engA; GTPase D PA0635 GTPase of unknown function K14540 rbgA; ribosome biogenesis GTPase A D PA0146 sua5; Translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PA0767 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D PA0609 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D PA0617 Conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor D PA0347 Putative GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:pal03016] D PA0498 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PA0678 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PA0346 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PA0104 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PA0128 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PA0694 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PA0540 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PA0536 lysU; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PA0486 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PA0509 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PA0026 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PA0615 GRS1; Glycyl-tRNA synthetase, class II K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PA0018 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PA0596 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PA0499 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PA0142 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PA0485 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PA0532 pheS; Phenylalanyl-tRNA synthetase alpha-chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PA0531 pheT; Phenylalanyl-tRNA synthetase beta-chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PA0546 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PA0542 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PA0705 hit; Diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PA0170 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PA0783 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PA0146 sua5; Translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PA0638 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PA0020 trmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D PA0644 gidA; Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PA0676 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D rnpB rnpB gene for ribonuclease P RNA K01978 rnpB; M1 RNA D PA0712 codA; Cytidine/deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D PA0548 trmD; tRNA (Guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D PA0612 Conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D PA0766 trmU; tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D PA0601 thiI; Thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PA0487 mesJ; Cell cycle protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D PA0216 Conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D PA0093 gcp; O-sialoglycoprotein endopeptidase-like protein K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D PA0215 Conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D PA0674 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:pal03012] D PA0608 infB; Translation initiation factor 2 K02519 infB; translation initiation factor IF-2 D PA0095 infC; Translation initiation factor IF3 K02520 infC; translation initiation factor IF-3 D PA0518 tsf; Elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D PA0660 tufB; Translation elongation factor EF-Tu K02358 tuf; elongation factor Tu D PA0661 fusA; Elongation factor G K02355 fusA; elongation factor G D PA0147 prfA; Protein chain release factor A K02835 prfA; peptide chain release factor 1 D PA0516 frr; Ribosome recycling factor K02838 frr; ribosome recycling factor D PA0610 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D PA0564 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D PA0637 efp; Elongation factor P (EF-P) K02356 efp; elongation factor P D PA0550 prfB; Protein chain release factor B K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:pal03110] D PA0555 dnaK; Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PA0761 groL; Chaperonin GroEL (Hsp60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PA0554 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D PA0556 grpE; Molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE D PA0717 Hsp20-family chaperone K13993 HSP20; HSP20 family protein D PA0760 groES; Chaperonin GroES (Hsp10) K04078 groES; chaperonin GroES D PA0488 hflB; ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0539 hflB; ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0235 Putative IMP dehydrogenase/GMP reductase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0136 Putative peptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0068 Putative IMP dehydrogenase/GMP reductase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0799 Putative IMP dehydrogenase/GMP reductase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PA0784 trxA; Thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:pal04131] D PA0382 Conserved hypothetical protein K12472 EPS15; epidermal growth factor receptor substrate 15 D PA0798 Conserved hypothetical protein K12472 EPS15; epidermal growth factor receptor substrate 15 D PA0204 Conserved hypothetical protein K12472 EPS15; epidermal growth factor receptor substrate 15 D PA0416 Conserved hypothetical protein K12472 EPS15; epidermal growth factor receptor substrate 15 D PA0510 gapA; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PA0061 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:pal03032] D PA0004 Putative C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PA0683 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0198 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0330 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D PA0042 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0321 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0376 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0230 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0432 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0738 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0070 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0422 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0397 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D PA0804 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0001 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D PA0148 dnaC; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0361 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0037 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0073 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0094 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0193 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0210 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0225 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0255 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0326 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0371 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0732 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0809 Replicative DNA helicase, prophage K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PA0614 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D PA0360 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D PA0822 dnaB2; Replication initiation/membrane attachment protein K03346 dnaB; replication initiation and membrane attachment protein D PA0821 Putative DNA replication protein K11144 dnaI; primosomal protein DnaI D PA0814 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0151 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0724 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0317 Putative prophage-derived single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0408 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0791 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0535 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PA0541 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D PA0002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PA0145 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PA0168 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PA0623 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PA0707 rnhC; Ribonuclease HII family protein K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] D PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PA0250 dam; Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D PA0214 gyrA; DNA gyrase alpha subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D PA0213 gyrB; DNA gyrase beta subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D PA0634 topA; Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:pal03036] D PA0004 Putative C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PA0631 rnc; DsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3] D PA0683 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0198 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0330 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D PA0042 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0321 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0376 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0230 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0432 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0738 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0070 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0422 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0397 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D PA0804 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0001 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D PA0644 gidA; Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PA0645 gidB; Glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D PA0143 engB; GTP-binding protein K03978 engB; GTP-binding protein D PA0771 Conserved hypothetical protein DUF199 K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:pal03400] D PA0521 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D PA0520 dut; DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PA0823 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D PA0770 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PA0699 uvrA; Excinuclease ATPase subunit A K03701 uvrA; excinuclease ABC subunit A D PA0453 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B D PA0452 uvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C D PA0693 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PA0665 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PA0664 rpoC; DNA-directed RNA polymerase beta chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PA0560 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PA0625 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta D PA0106 rpoZ; Putative DNA-directed RNA polymerase,omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D PA0535 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PA0541 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D PA0002 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PA0145 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PA0168 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PA0623 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PA0814 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0151 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0724 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0317 Putative prophage-derived single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0408 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0791 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0250 dam; Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D PA0123 priA; Primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D PA0214 gyrA; DNA gyrase alpha subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D PA0213 gyrB; DNA gyrase beta subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D PA0634 topA; Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PA0683 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0198 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0330 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D PA0042 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0321 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0376 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0230 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0432 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0738 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0070 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0422 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0397 himA; Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D PA0804 huP; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D PA0056 nrdA; Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PA0112 nrdF; Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PA0021 Phosphoesterase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D PA0019 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:pal03029] D PA0608 infB; Translation initiation factor 2 K02519 infB; translation initiation factor IF-2 D PA0095 infC; Translation initiation factor IF3 K02520 infC; translation initiation factor IF-3 D PA0518 tsf; Elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D PA0660 tufB; Translation elongation factor EF-Tu K02358 tuf; elongation factor Tu D PA0661 fusA; Elongation factor G K02355 fusA; elongation factor G D PA0616 era; Glycyl-tRNA synthetase K03595 era; GTPase D PA0546 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PA0104 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PA0486 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PA0615 GRS1; Glycyl-tRNA synthetase, class II K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PA0540 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PA0814 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0151 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0724 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0317 Putative prophage-derived single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PA0408 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0791 Single-strand DNA-binding protein of phage K03111 ssb; single-strand DNA-binding protein D PA0555 dnaK; Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PA0556 grpE; Molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE D PA0761 groL; Chaperonin GroEL (Hsp60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PA0760 groES; Chaperonin GroES (Hsp10) K04078 groES; chaperonin GroES D PA0554 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D PA0675 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:pal02000] D PA0114 mdlB; ABC-type multidrug/protein/lipid transport system, ATPase component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D PA0115 Putative ABC transporter subunit K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D PA0132 potD; ABC-type spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D PA0133 potC; ABC-type spermidine/putrescine transport system, permease component II K11070 potC; spermidine/putrescine transport system permease protein D PA0134 potB; ABC-type spermidine/putrescine transport system, permease component I K11071 potB; spermidine/putrescine transport system permease protein D PA0135 potA; ABC-type spermidine/putrescine transport systems, ATPase component K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D PA0025 malK; ABC-type sugar transport system, ATPase component K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PA0022 ugpB; Sugar transport system substrate-binding protein, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D PA0024 ugpA; Sugar transport system, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D PA0023 ugpE; Sugar transport system, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D PA0455 Putative ABC-type metal ion transport system, periplasmic component/surface antigen (may be involved in bacterial virulence) K02073 metQ; D-methionine transport system substrate-binding protein D PA0491 metQ; Putative D-methionine transport system substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D PA0454 nlpA; ABC-type uncharacterized transport system, periplasmic component K02073 metQ; D-methionine transport system substrate-binding protein D PA0492 metl; D-methionine transport system permease protein K02072 metI; D-methionine transport system permease protein D PA0490 metN; D-methionine transport system ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D PA0775 glnQ; ABC-type amino acid transport system,ATPase component K17076 lysY; putative lysine transport system ATP-binding protein D PA0450 artM; Amino acid ABC transporter permease component K02029 ABC.PA.P; polar amino acid transport system permease protein D PA0755 ABC-type peptide/nickel transport system substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PA0756 ABC-type peptide/nickel transport system substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PA0757 ABC-type peptide/nickel transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D PA0754 ABC-type peptide/nickel transport system ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D PA0481 znuA; ABC-type Zn/Mn transport system periplasmic component/surface adhesion K11707 troA; manganese/zinc/iron transport system substrate-binding protein D PA0483 znuB; ABC-type Zn/Mn transport system,permease component K11708 troC; manganese/zinc/iron transport system permease protein D PA0484 znuB; ABC-type Zn/Mn transport system,permease component K11709 troD; manganese/zinc/iron transport system permease protein D PA0482 znuC; ABC-type Zn/Mn transport system, ATPase component K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D PA0141 Conserved hypothetical protein (DUF1393) K16924 mtsT; energy-coupling factor transport system substrate-specific component D PA0173 cbiQ; ABC-type cobalt transport system,permease component K16785 ecfT; energy-coupling factor transport system permease protein D PA0139 cbiQ; ABC-type cobalt transport system,permease protein K16785 ecfT; energy-coupling factor transport system permease protein D PA0175 cbiO2; ABC-type cobalt import ATP-binding protein cbiO 2 K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PA0174 cbiO2; ABC-type Cobalt import ATP-binding protein CbiO 2 K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PA0140 cbiO1; ABC-type cobalt transport system, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PA0530 phnL; ABC transporter, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PA0110 norM; Na+ driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump D PA0633 norM; Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump D PA0165 norM; Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump D PA0113 mscL; Putative large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel D PA0611 Putative transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02044 Secretion system [BR:pal02044] D PA0552 hypothetical protein K12209 icmE; intracellular multiplication protein IcmE D PA0551 secA; Preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PA0567 secY; SecY protein K03076 secY; preprotein translocase subunit SecY D PA0826 ffh; Signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PA0827 ftsY; Signal recognition particle-docking protein K03110 ftsY; fused signal recognition particle receptor D PA0675 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:pal02042] D PA0611 Putative transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D PA0120 Hemolysin III related protein K11068 hlyIII; hemolysin III C 02022 Two-component system C 02035 Bacterial motility proteins [BR:pal02035] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins C 04147 Exosome [BR:pal04147] D PA0059 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PA0510 gapA; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PA0511 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PA0061 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D PA0761 groL; Chaperonin GroEL (Hsp60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PA0555 dnaK; Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PA0166 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PA0660 tufB; Translation elongation factor EF-Tu K02358 tuf; elongation factor Tu D PA0705 hit; Diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PA0566 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PA0689 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PA0514 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:pal02048] D PA0438 Restriction enzyme alpha subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D PA0777 rsrIR; Putative restriction endonuclease K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4] D PA0250 dam; Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D PA0004 Putative C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PA0498 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified [BR:pal04990] B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:pal03100] D tRNA-Ala tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Arg-2 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-1 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Asn tRNA-Asn K14220 tRNA-Asn; tRNA Asn D tRNA-Asp tRNA-Asp K14221 tRNA-Asp; tRNA Asp D tRNA-Cys tRNA-Cys K14222 tRNA-Cys; tRNA Cys D tRNA-Gln-1 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln D tRNA-Gln-2 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln D tRNA-Glu tRNA-Glu K14224 tRNA-Glu; tRNA Glu D tRNA-Gly-2 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-Gly-1 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-His-1 tRNA-His; tRNA-His K14226 tRNA-His; tRNA His D tRNA-His-2 tRNA-His; tRNA-His K14226 tRNA-His; tRNA His D tRNA-Ile-1 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile D tRNA-Ile-2 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile D tRNA-Leu-5 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-1 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-3 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-4 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-2 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Lys tRNA-Lys K14229 tRNA-Lys; tRNA Lys D tRNA-Met-1 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Met-2 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Met-3 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Phe tRNA-Phe K14231 tRNA-Phe; tRNA Phe D tRNA-Pro tRNA-Pro K14232 tRNA-Pro; tRNA Pro D tRNA-Ser-3 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-2 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-1 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Thr-2 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Thr-1 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Pseudo tRNAscan-SE-score 37.79; transfer RNA-Pseudo K14235 tRNA-Trp; tRNA Trp D tRNA-Trp tRNA-Trp K14235 tRNA-Trp; tRNA Trp D tRNA-Tyr tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D tRNA-Val tRNA-Val K14237 tRNA-Val; tRNA Val D 23S_rRNA-2 23S_RNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-1 23S_rRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D rnpB rnpB gene for ribonuclease P RNA K01978 rnpB; M1 RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D PA0087 Conserved hypothetical protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D PA0819 Putative kinase related to dihydroxyacetone kinase K07030 fakA; fatty acid kinase [EC:2.7.2.18] D PA0090 Conserved hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D PA0505 Putative hydrolase of the HAD superfamily K07015 yqeG; putative phosphatase [EC:3.1.3.-] D PA0149 Exopolyphosphatase-related protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D PA0690 tatD; Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D PA0345 mgtA; Cation-transporting ATPase A, P type (ATPase, E1-E2 type) K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D PA0270 zntA; Cation transport ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D PA0089 mgtA; Cation transport P-ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] D PA0673 mgtA; Cation transport ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D PA0544 iscU; NifU homolog K04488 iscU; nitrogen fixation protein NifU and related proteins D PA0456 iscU; NifU homolog involved in Fe-S cluster formation K04488 iscU; nitrogen fixation protein NifU and related proteins C 99983 Lipid metabolism D PA0007 degV; DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D PA0820 csp; Cold shock protein, similar to Csp of Bacteriophage bIL312 K03704 cspA; cold shock protein D PA0012 spxA; Putative regulatory protein spx K16509 spxA; regulatory protein spx C 99974 Translation C 99975 Protein processing D PA0700 tig; Trigger factor (TF) K03545 tig; trigger factor D PA0603 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein C 99976 Replication and repair D PA0642 Conserved hypothetical protein (DUF195) K09760 rmuC; DNA recombination protein RmuC D PA0630 dnaD; Putative DNA replication protein K02086 dnaD; DNA replication protein D PA0620 Putative phage integrase K07497 K07497; putative transposase D PA0788 Putative phage integrase K07497 K07497; putative transposase D PA0796 Putative phage integrase K07497 K07497; putative transposase D PA0811 Putative phage integrase K07497 K07497; putative transposase D PA0206 Putative phage integrase K07497 K07497; putative transposase D PA0351 Putative phage integrase K07497 K07497; putative transposase D PA0440 Transposase, fragment K07497 K07497; putative transposase D PA0384 Putative phage integrase K07497 K07497; putative transposase D PA0063 Putative phage integrase K07497 K07497; putative transposase D PA0126 Putative phage integrase K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D PA0624 Conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport C 99978 Cell growth D PA0271 spoVG; Putative septation protein spoVG (Stage V sporulation protein G) K06412 spoVG; stage V sporulation protein G C 99993 Cell motility C 99995 Signaling proteins C 99992 Structural proteins C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D PA0595 Rhodanese family protein K07146 K07146; UPF0176 protein C 99997 Function unknown D PA0273 HD superfamily phosphohydrolase K06885 K06885; uncharacterized protein D PA0502 Conserved hypothetical protein K09976 K09976; uncharacterized protein D PA0593 Putative ribosome-associated protein K07584 ysxB; uncharacterized protein D PA0607 Conserved hypothetical protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 20, 2024