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  Transfer RNA Biogenesis - Pseudomonas alcaligenes

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AEukaryotic type B 5'processing factors C Ribonucrease P B 3'processing and CCA adding factors C 3'processing factors C CCA adding factors D A0T30_20130 cca; multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonuclease complex C tRNA splicing ligase complex C Other tRNA splicing factors B tRNA transport factors C tRNA export factors C tRNA import factors B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D A0T30_09360 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A0T30_16295 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D A0T30_18845 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D A0T30_05175 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A0T30_10020 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D A0T30_10165 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D A0T30_04330 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D A0T30_07095 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D A0T30_16250 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] C Other AARSs D A0T30_14650 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A0T30_13660 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D A0T30_13160 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D A0T30_10170 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D A0T30_06275 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D A0T30_17700 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D A0T30_13640 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D A0T30_13635 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D A0T30_19920 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A0T30_05730 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C Trans-editing factors D A0T30_04215 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D A0T30_03815 alanyl-tRNA editing protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] C AARS associated factors D A0T30_19970 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D A0T30_15760 HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D A0T30_08705 HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] B tRNA modification factors C Deaminases C Dihydorouridine synthases C Methylthiotransferase C Methyltransferases D A0T30_00355 tRNA (guanine(46)-N(7))-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D A0T30_16520 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] C Psudouridine synthases D A0T30_09460 truA; tRNA pseudouridine(38,39,40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D A0T30_18095 tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D A0T30_17080 tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] C Thiolation factors D A0T30_17760 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C KEOPS/EKC complex C Elongator complex C Elongator related proteins C Other tRNA modification factors D A0T30_02130 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D A0T30_08840 SUA5/YciO/YrdC family translation initiation protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D A0T30_04900 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D A0T30_01985 tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D A0T30_01980 gidA; tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D A0T30_14775 selenide,water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3] B tRNA degradation factors C TRAMP complex C Rapid tRNA decay (RTD) pathway factors D A0T30_00330 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] C Other tRNA degradation factors # AProkaryotic type B 5'processing factors C Ribonucrease P D A0T30_05815 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA B 3'processing and CCA adding factors C 3'processing factors D A0T30_09955 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D A0T30_01050 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D A0T30_08640 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] C CCA adding factors D A0T30_20130 cca; multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonucleases C tRNA splicing ligases C Other tRNA splicing factors D A0T30_12130 hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] B tRNA transport factors C tRNA export factors D A0T30_18940 energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D A0T30_05175 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D A0T30_16295 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] C Other AARSs D A0T30_19920 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D A0T30_05730 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D A0T30_13660 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D A0T30_18845 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D A0T30_07095 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D A0T30_14650 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D A0T30_06275 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D A0T30_10020 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D A0T30_13160 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D A0T30_16250 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D A0T30_02070 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D A0T30_02065 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D A0T30_10170 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D A0T30_09360 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D A0T30_10165 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D A0T30_04330 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D A0T30_13640 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D A0T30_13635 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D A0T30_17700 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D A0T30_17990 tRNA glutamyl-Q synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] C Trans-editing factors D A0T30_04215 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D A0T30_15680 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D A0T30_03815 alanyl-tRNA editing protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] B tRNA modification factors C Deaminases D A0T30_17625 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] C Dihydorouridine synthases D A0T30_13685 tRNA dihydrouridine synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D A0T30_06465 tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D A0T30_09410 tRNA dihydrouridine synthase DusC K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] C Methylthiotransferases D A0T30_05210 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] C Methyltransferases D A0T30_07570 SAM-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D A0T30_08595 tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D A0T30_08590 tRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D A0T30_06590 SAM-dependent methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D A0T30_19080 tRNA (uridine(54)-C5)-methyltransferase TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D A0T30_00355 tRNA (guanine(46)-N(7))-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D A0T30_17510 tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D A0T30_01985 tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D A0T30_17775 RNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D A0T30_13760 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D A0T30_00045 tRNA (cytosine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D A0T30_16520 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D A0T30_13445 rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family C Psudouridine synthases D A0T30_09460 truA; tRNA pseudouridine(38,39,40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D A0T30_18095 tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D A0T30_17080 tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D A0T30_16840 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D A0T30_15910 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] C Thiolation factors D A0T30_13230 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D A0T30_08790 tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D A0T30_11870 tRNA 2-thiouridine(34) synthase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D A0T30_16165 response regulator SirA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D A0T30_13140 sulfur relay protein DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B D A0T30_13135 tRNA 2-thiouridine(34) synthase TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C D A0T30_13130 tRNA 2-thiouridine(34) synthase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D A0T30_13145 sulfur relay protein TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D A0T30_17750 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D A0T30_17760 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D A0T30_08180 aminomethyltransferase K06980 ygfZ; tRNA-modifying protein YgfZ C KEOPS/EKC complex C Other tRNA modification factors D A0T30_01980 gidA; tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D A0T30_04900 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D A0T30_09945 tRNA hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D A0T30_14980 bifunctional tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MnmD/FAD-dependent cmnm(5)s(2)U34 oxidoreductase MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D A0T30_17810 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D A0T30_16185 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D A0T30_13395 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D A0T30_16190 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D A0T30_13730 preQ(1) synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D A0T30_04875 epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D A0T30_14775 selenide,water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3] D A0T30_14770 selenophosphate-dependent tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D A0T30_17805 tgt; tRNA-guanine(34) transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D A0T30_03800 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D A0T30_07415 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D A0T30_07145 tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D A0T30_02130 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D A0T30_08840 SUA5/YciO/YrdC family translation initiation protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D A0T30_20150 N(6)-L-threonylcarbamoyladenine synthase TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D A0T30_04885 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D A0T30_07270 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase B tRNA degradation factors C A0T30_19260 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] C A0T30_18085 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024