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Transcription Machinery - Paenibacillus albicereus
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E HGI30_13035 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E HGI30_22155 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E HGI30_03190 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E HGI30_03010 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E HGI30_03015 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E HGI30_01215 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
E HGI30_12960 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E HGI30_13850 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E HGI30_09135 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_14390 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_02135 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_03355 sigW; RNA polymerase sigma factor SigW K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_06750 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_18695 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_02195 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_15480 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_19340 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_20905 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_14210 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_07060 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HGI30_18675 sigma-70 family RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E HGI30_09810 sigF; RNA polymerase sporulation sigma factor SigF K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E HGI30_13565 sigG; RNA polymerase sporulation sigma factor SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E HGI30_13600 sigE; RNA polymerase sporulation sigma factor SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E HGI30_02965 sigH; RNA polymerase sporulation sigma factor SigH K27000 sigH; RNA polymerase sigma-H factor
E HGI30_06950 sigI; RNA polymerase sigma factor SigI K03093 sigI; RNA polymerase sigma-I factor
E HGI30_22280 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E HGI30_12290 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
E HGI30_15945 sigma-70 family RNA polymerase sigma factor K24072 xpf; positive control factor
C Other transcription-related factors
D RNA polymerase-associated proteins
E HGI30_12210 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E HGI30_09655 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
E HGI30_02980 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E HGI30_06960 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E HGI30_18710 fused response regulator/phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E HGI30_18665 STAS domain-containing protein K04749 rsbV; anti-sigma B factor antagonist
E HGI30_18670 rsbW; anti-sigma B factor RsbW K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E HGI30_00535 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E HGI30_22430 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024