+F Repair protein KO #

  DNA Repair and Recombination Proteins - Paracoccus aminophilus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E JCM7686_0757 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E JCM7686_3073 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E JCM7686_0624 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D JCM7686_2704 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7686_0135 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7686_2998 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7686_2872 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D JCM7686_0623 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D JCM7686_pAMI5p076 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D JCM7686_2677 methylated-DNA-(protein)-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D JCM7686_pAMI5p075 alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E JCM7686_0757 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E JCM7686_pAMI4p331 uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E JCM7686_0264 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E JCM7686_2055 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E JCM7686_3073 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E JCM7686_0517 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E JCM7686_0666 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E JCM7686_0624 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E JCM7686_2891 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E JCM7686_3402 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E JCM7686_1078 single-stranded-DNA-specific exonuclease RecF K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E JCM7686_2218 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E JCM7686_1103 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E JCM7686_2515 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E JCM7686_2310 excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E JCM7686_3046 excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C E JCM7686_0943 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E JCM7686_1103 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E JCM7686_2218 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F JCM7686_3220 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F JCM7686_3219 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F JCM7686_3184 DNA-directed RNA polymerase, subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F JCM7686_1949 DNA-directed RNA polymerase, subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F JCM7686_2156 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E JCM7686_3143 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E JCM7686_3269 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E JCM7686_0280 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E JCM7686_1603 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E JCM7686_0227 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E JCM7686_1318 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E JCM7686_2027 DNA polymerase III, subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E JCM7686_0661 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E JCM7686_2265 DNA polymerase III, subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E JCM7686_0737 DNA polymerase III, subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E JCM7686_3411 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E JCM7686_0750 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E JCM7686_3461 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E JCM7686_pAMI4p352 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E JCM7686_1940 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E JCM7686_2218 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E JCM7686_0943 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E JCM7686_2161 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E JCM7686_pAMI8p047 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E JCM7686_2538 recombinase A K03553 recA; recombination protein RecA E JCM7686_0483 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E JCM7686_0481 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E JCM7686_0484 Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E JCM7686_0400 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E JCM7686_0280 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E JCM7686_2538 recombinase A K03553 recA; recombination protein RecA E JCM7686_2060 DNA repair protein RadA/Sms K04485 radA; DNA repair protein RadA/Sms E JCM7686_0660 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E JCM7686_2217 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E JCM7686_1078 single-stranded-DNA-specific exonuclease RecF K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E JCM7686_0658 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E JCM7686_1942 recombination protein RecR K06187 recR; recombination protein RecR E JCM7686_0693 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E JCM7686_0483 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E JCM7686_0481 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E JCM7686_0484 Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E JCM7686_3439 ATP-dependent DNA helicase, AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E JCM7686_3440 helicase/exonuclease, AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E JCM7686_1393 helicase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F JCM7686_1030 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F JCM7686_0242 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F JCM7686_0469 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F JCM7686_0237 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F JCM7686_pAMI8p115 HNS-type DNA binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F JCM7686_1078 single-stranded-DNA-specific exonuclease RecF K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F JCM7686_0658 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F JCM7686_1942 recombination protein RecR K06187 recR; recombination protein RecR F JCM7686_2218 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F JCM7686_1093 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F JCM7686_1288 integration host factor, subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F JCM7686_0280 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F JCM7686_0328 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F JCM7686_2515 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F JCM7686_2310 excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B F JCM7686_3426 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F JCM7686_pAMI8p120 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D JCM7686_2612 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D JCM7686_1991 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D JCM7686_2906 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D JCM7686_3234 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D JCM7686_2538 recombinase A K03553 recA; recombination protein RecA D JCM7686_0753 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D JCM7686_0693 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D JCM7686_pAMI8p201 nucleotidyltransferase/DNA polymerase involved in DNA repair K14160 imuA; protein ImuA D JCM7686_1973 hypothetical protein K14161 imuB; protein ImuB D JCM7686_pAMI8p202 nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB D JCM7686_1972 DNA polymerase III, subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D JCM7686_pAMI8p203 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D JCM7686_2161 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D JCM7686_pAMI8p047 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D JCM7686_pAMI4p365 ATP-dependent helicase, DEAD/DEAH box family protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D JCM7686_2704 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7686_0135 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7686_2998 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7686_2872 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D JCM7686_2417 ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JCM7686_1368 ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JCM7686_0201 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JCM7686_0202 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024