+F Repair protein KO #

  DNA Repair and Recombination Proteins - Paracoccus aminovorans

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E JCM7685_0966 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E JCM7685_2585 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E JCM7685_1047 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D JCM7685_0162 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7685_0313 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7685_0708 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7685_2093 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D JCM7685_1046 methylated-DNA-protein-cysteine methyltransferase, partial K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D pAMV3p0068 methylated-DNA-protein-cysteinemethyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D JCM7685_0745 methylated-DNA-protein-cysteinemethyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D JCM7685_1989 alkB; alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E JCM7685_0966 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E pAMV1p0140 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E JCM7685_0615 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E JCM7685_1728 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E JCM7685_2585 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E JCM7685_0788 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E JCM7685_1092 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E JCM7685_1047 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E JCM7685_1200 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E JCM7685_2836 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E JCM7685_2071 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E JCM7685_1882 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E JCM7685_2035 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E JCM7685_0851 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E JCM7685_1739 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E JCM7685_0654 excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C E JCM7685_1978 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E JCM7685_2035 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E JCM7685_1882 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F JCM7685_0600 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F JCM7685_0601 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F JCM7685_2698 rpoA; DNA-directed RNA polymerase, subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F JCM7685_1798 rpoZ; DNA-directed RNA polymerase, subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F JCM7685_1922 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E JCM7685_2654 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E JCM7685_2949 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E JCM7685_1828 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E JCM7685_2787 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E JCM7685_1326 dnaE3; DNA polymerase III, subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E JCM7685_1088 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E JCM7685_2285 DNA polymerase III, subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E JCM7685_3005 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E JCM7685_0959 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E JCM7685_1409 DNA polymerase III, subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E JCM7685_0381 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E pAMV1p0084 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E JCM7685_1543 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E JCM7685_1882 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E JCM7685_1978 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E JCM7685_1927 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E JCM7685_2507 recA; recombinase A K03553 recA; recombination protein RecA E JCM7685_0557 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E JCM7685_0555 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E JCM7685_0558 ruvC; Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E JCM7685_0471 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E JCM7685_2507 recA; recombinase A K03553 recA; recombination protein RecA E JCM7685_1733 DNA repair protein RadA/Sms K04485 radA; DNA repair protein RadA/Sms E JCM7685_1087 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E JCM7685_1881 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E JCM7685_2071 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E JCM7685_1085 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E JCM7685_1541 recR; recombination protein RecR K06187 recR; recombination protein RecR E JCM7685_1125 recN; DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E JCM7685_0557 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E JCM7685_0555 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E JCM7685_0558 ruvC; Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E JCM7685_0362 UvrD-like domain-containing DNA helicase protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E JCM7685_0363 DNA helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E JCM7685_2863 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E JCM7685_0242 DNA helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E JCM7685_1306 helicase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E pAMV3p0514 DNA repair protein K10979 ku; DNA end-binding protein Ku E pAMV3p0280 DNA repair protein K10979 ku; DNA end-binding protein Ku E pAMV3p0281 ykoU2; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F JCM7685_1431 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F JCM7685_2770 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F JCM7685_0538 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F JCM7685_2779 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F JCM7685_2071 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F JCM7685_1085 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F JCM7685_1541 recR; recombination protein RecR K06187 recR; recombination protein RecR F JCM7685_1882 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F JCM7685_2046 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F JCM7685_1996 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F JCM7685_2895 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F JCM7685_0851 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F JCM7685_1739 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B F pAMV3p0184 trans-acting regulatory protein hvrA K03746 hns; DNA-binding protein H-NS F JCM7685_0350 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D JCM7685_0045 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D JCM7685_0584 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D JCM7685_2507 recA; recombinase A K03553 recA; recombination protein RecA D JCM7685_0962 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D JCM7685_1125 recN; DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D JCM7685_1958 hypothetical protein K14160 imuA; protein ImuA D JCM7685_0043 hypothetical protein K14160 imuA; protein ImuA D JCM7685_1959 hypothetical protein K14161 imuB; protein ImuB D JCM7685_0042 imuB; DNA repair nucleotidyltransferase/DNA polymerase-like protein K14161 imuB; protein ImuB D JCM7685_1960 dnaE2; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D JCM7685_0041 dnaE1; DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D JCM7685_1927 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D JCM7685_2773 ATP-dependent helicase, DEAD/DEAH box family protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D JCM7685_0162 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7685_0313 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7685_0708 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D JCM7685_2093 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D pAMV3p0262 nrdE; Ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JCM7685_2273 ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D JCM7685_1302 nrdJ; ribonucleoside-diphosphate reductase, subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D pAMV3p0263 nrdF2; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024