+E Transcription factors KO
#
Transcription Factors - Pantoea sp. PSNIH2
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D PSNIH2_21775 DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PSNIH2_20155 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PSNIH2_20845 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PSNIH2_05570 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PSNIH2_19775 modification methylase EcoRII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D PSNIH2_08500 transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D PSNIH2_08040 transcriptional regulator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D PSNIH2_08045 AraC family transcriptional regulator K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D PSNIH2_00115 transcriptional regulator K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D PSNIH2_08105 AraC family transcriptional regulator K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D PSNIH2_14775 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D PSNIH2_00260 hypothetical protein K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D PSNIH2_11910 Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D PSNIH2_07985 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PSNIH2_02245 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PSNIH2_16665 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D PSNIH2_16390 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PSNIH2_14700 nhaR; transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D PSNIH2_16775 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PSNIH2_01855 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PSNIH2_07580 cysB; CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D PSNIH2_05395 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D PSNIH2_08905 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PSNIH2_05390 nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D PSNIH2_16130 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D PSNIH2_16705 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D PSNIH2_14800 transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D PSNIH2_18780 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D PSNIH2_12410 DeoR faimly transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D PSNIH2_03580 DeoR faimly transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D PSNIH2_09790 srlR; transcriptional regulator K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
C LacI family
D PSNIH2_10005 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D PSNIH2_02045 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSNIH2_15205 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSNIH2_17325 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSNIH2_04750 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSNIH2_17805 XylR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSNIH2_17680 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D PSNIH2_16850 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D PSNIH2_19030 cytochrome C peroxidase K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D PSNIH2_14495 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D PSNIH2_00040 sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D PSNIH2_13220 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D PSNIH2_15455 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D PSNIH2_08710 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D PSNIH2_18715 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D PSNIH2_11565 transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
C GntR family
D PSNIH2_05420 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D PSNIH2_05825 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D PSNIH2_07240 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D PSNIH2_14320 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PSNIH2_02030 transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D PSNIH2_18520 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D PSNIH2_00840 transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D PSNIH2_17730 transcriptional regulator K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D PSNIH2_04080 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PSNIH2_04950 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
C TetR/AcrR family
D PSNIH2_08610 BetI family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PSNIH2_12565 transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D PSNIH2_17120 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D PSNIH2_10705 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D PSNIH2_22335 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PSNIH2_08685 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PSNIH2_16765 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D PSNIH2_14175 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D PSNIH2_17405 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D PSNIH2_11090 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PSNIH2_06040 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PSNIH2_12640 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D PSNIH2_09925 AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D PSNIH2_10685 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D PSNIH2_01585 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D PSNIH2_05640 capsule biosynthesis protein CapA K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D PSNIH2_18785 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D PSNIH2_08660 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PSNIH2_10530 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PSNIH2_02750 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D PSNIH2_08235 transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D PSNIH2_17930 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D PSNIH2_20665 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D PSNIH2_21740 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D PSNIH2_20690 transcriptional regulator MerD K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D PSNIH2_21715 transcriptional regulator MerD K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D PSNIH2_12475 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PSNIH2_00120 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D PSNIH2_11480 transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D PSNIH2_12120 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PSNIH2_19665 zinc uptake transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D PSNIH2_07080 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D PSNIH2_19000 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PSNIH2_07950 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D PSNIH2_03150 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D PSNIH2_00570 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D PSNIH2_08095 hypothetical protein K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
D PSNIH2_23340 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PSNIH2_05795 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D PSNIH2_08150 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D PSNIH2_11395 manganese transporter K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D PSNIH2_06450 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PSNIH2_15740 hypothetical protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PSNIH2_19375 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PSNIH2_16230 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PSNIH2_14790 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D PSNIH2_20570 Ner K07724 ner; Ner family transcriptional regulator
D PSNIH2_15925 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D PSNIH2_14535 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D PSNIH2_14825 transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D PSNIH2_05240 transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D PSNIH2_22330 transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D PSNIH2_06720 XRE family transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D PSNIH2_15280 sigma-54 dependent transcriptional regulator K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D PSNIH2_13135 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D PSNIH2_14050 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D PSNIH2_11840 transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D PSNIH2_17915 transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D PSNIH2_16835 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D PSNIH2_05995 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PSNIH2_22170 bifunctional antitoxin/transcriptional repressor RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D PSNIH2_03885 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D PSNIH2_21485 hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D PSNIH2_22350 regulator protein FrmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D PSNIH2_12695 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PSNIH2_22845 peptide transporter K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSNIH2_20200 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSNIH2_22460 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSNIH2_21080 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSNIH2_20255 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSNIH2_20415 transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSNIH2_16330 rfaH; transcriptional regulator K05785 rfaH; transcriptional antiterminator RfaH
D PSNIH2_16085 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D PSNIH2_12160 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D PSNIH2_08455 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D PSNIH2_17895 mtlR; mannitol repressor protein K02562 mtlR; mannitol operon repressor
D PSNIH2_07795 transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PSNIH2_03440 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D PSNIH2_07760 pspF; phage shock protein K03974 pspF; psp operon transcriptional activator
D PSNIH2_07775 transcriptional regulator K03973 pspC; phage shock protein C
D PSNIH2_06895 transcriptional regulator K07733 alpA; prophage regulatory protein
D PSNIH2_01690 hypothetical protein K07735 algH; putative transcriptional regulator
D PSNIH2_14130 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D PSNIH2_12810 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D PSNIH2_13605 hypothetical protein K11926 crl; sigma factor-binding protein Crl
D PSNIH2_14490 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0