+E Ribosome biogenesis KO
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Ribosome Biogenesis - Pantoea sp. PSNIH2
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D PSNIH2_03030 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D PSNIH2_00480 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C PSNIH2_03035 hypothetical protein K03595 era; GTPase
C PSNIH2_15905 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C PSNIH2_14130 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
C PSNIH2_15835 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C PSNIH2_12795 nusB; transcription antiterminator NusB K03625 nusB; transcription antitermination protein NusB
C PSNIH2_19415 nusG; transcription antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D PSNIH2_04590 16S rRNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PSNIH2_14605 ksgA; 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PSNIH2_19305 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PSNIH2_15110 rsmC; 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PSNIH2_18610 rsmD; 16S rRNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PSNIH2_01700 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PSNIH2_07040 yebU; RNA methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D PSNIH2_17420 gidB; 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PSNIH2_14485 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PSNIH2_00765 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PSNIH2_18395 methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D PSNIH2_07105 23S rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PSNIH2_00580 23S rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PSNIH2_15875 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PSNIH2_11440 23S rRNA methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D PSNIH2_00890 23S rRNA methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D PSNIH2_12285 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PSNIH2_10790 23S rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PSNIH2_18380 ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D PSNIH2_10880 rlmL; 23S rRNA methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D PSNIH2_02255 23S rRNA methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D PSNIH2_03220 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PSNIH2_02350 rumA; 23S rRNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PSNIH2_11205 rumB; 23S rRNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D PSNIH2_14580 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PSNIH2_07550 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PSNIH2_10305 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PSNIH2_02665 rluD; 23S rRNA pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PSNIH2_10060 23S rRNA pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D PSNIH2_02735 methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C PSNIH2_15100 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C PSNIH2_10395 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C PSNIH2_11240 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C PSNIH2_02630 ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C PSNIH2_02615 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C PSNIH2_11310 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C PSNIH2_11045 ribosomal protein S12 methylthiotransferase accessory factor YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C PSNIH2_16215 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C PSNIH2_04035 SAM-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C PSNIH2_10095 50S ribosomal protein L16 arginine hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C PSNIH2_03030 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C PSNIH2_10310 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C PSNIH2_16145 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C PSNIH2_01685 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C PSNIH2_13195 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C PSNIH2_15800 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C PSNIH2_02985 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C PSNIH2_03035 hypothetical protein K03595 era; GTPase
C PSNIH2_00475 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C PSNIH2_03255 GTP-binding protein Der K03977 engA; GTPase
C PSNIH2_15905 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C PSNIH2_00540 GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C PSNIH2_19330 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PSNIH2_17190 (p)ppGpp synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C PSNIH2_15825 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C PSNIH2_15840 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C PSNIH2_12400 ribosome-associated protein K14761 rlbA; ribosome-associated protein
C PSNIH2_12280 ribosome-associated protein K09710 ybeB; ribosome-associated protein
C PSNIH2_12220 metal-binding heat shock protein K07042 ybeY; probable rRNA maturation factor
C PSNIH2_15880 RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C PSNIH2_17890 hypothetical protein K14762 yibL; ribosome-associated protein
C PSNIH2_00705 hypothetical protein K09889 yjgA; ribosome-associated protein
C PSNIH2_16000 ribosome hibernation promoting factor HPF K05808 hpf; ribosome hibernation promoting factor
C PSNIH2_02655 translation inhibitor protein RaiA K05809 raiA; ribosome-associated inhibitor A
C PSNIH2_09235 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase
C PSNIH2_10295 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024