+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pantoea ananatis PA13

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PAGR_g2967 methylated-DNA--protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PAGR_g2999 deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PAGR_g1121 uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PAGR_g0848 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PAGR_g2330 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PAGR_g3470 nucleoside triphosphate pyrophosphohydrolase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAGR_p173 MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAGR_g0126 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PAGR_g2967 methylated-DNA--protein-cysteine methyltransferase Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PAGR_g2999 deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PAGR_g1430 alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E PAGR_g1121 uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PAGR_g0687 G/U mismatch-specific DNA glycosylase Mug K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E PAGR_g3807 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PAGR_g2968 AraC family transcriptional regulator Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PAGR_g0848 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PAGR_g0020 DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PAGR_g0132 formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PAGR_g2991 endonuclease VIII Nei K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E PAGR_g2330 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PAGR_g1994 exodeoxyribonuclease III XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PAGR_g1473 endonuclease IV Nfo K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E PAGR_g4053 endonuclease V Nfi K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E PAGR_g0906 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PAGR_g1266 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAGR_g0114 DNA ligase YicF K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PAGR_g0094 DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PAGR_g4003 UvrABC system protein A UvrA K03701 uvrA; excinuclease ABC subunit A E PAGR_g2940 excinuclease ABC subunit B UvrB K03702 uvrB; excinuclease ABC subunit B E PAGR_g2727 UvrABC system protein C UvrC K03703 uvrC; excinuclease ABC subunit C E PAGR_g2427 excinuclease ABC subunit C domain-containing protein Cho K05984 cho; excinuclease Cho [EC:3.1.25.-] E PAGR_g4109 DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PAGR_g0094 DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E PAGR_g1266 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAGR_g0114 DNA ligase YicF K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PAGR_g4062 DNA-directed RNA polymerase subunit beta RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PAGR_g4061 DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PAGR_g0436 DNA-directed RNA polymerase subunit alpha RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PAGR_g0111 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PAGR_g2643 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PAGR_g0996 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PAGR_g0494 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E PAGR_g0917 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E PAGR_g1576 exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PAGR_g1177 exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PAGR_g3228 exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E PAGR_g1812 DNA polymerase III subunit epsilon K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] E PAGR_g1909 exodeoxyribonuclease X exoX K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E PAGR_g3391 DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PAGR_g0002 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PAGR_g3682 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PAGR_g3030 DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PAGR_g2657 DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PAGR_g3369 DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PAGR_g3178 DNA polymerase III tau subunit DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E PAGR_g3584 DNA polymerase III psi subunit HolD K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E PAGR_g1910 DNA polymerase III theta subunit HolE K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E PAGR_g3802 DNA polymerase II subunit beta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E PAGR_g1805 DNA polymerase II subunit beta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E PAGR_g1266 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAGR_g0114 DNA ligase YicF K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PAGR_g4109 DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PAGR_g3877 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PAGR_g4002 single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein E PAGR_g0369 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PAGR_g0650 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PAGR_g1722 very short patch repair protein Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PAGR_g0928 exodeoxyribonuclease V beta chain RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PAGR_g0926 exodeoxyribonuclease V gamma chain RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PAGR_g0929 exodeoxyribonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PAGR_g1001 recombinase A RecA K03553 recA; recombination protein RecA E PAGR_g1894 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PAGR_g1895 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PAGR_g1893 Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PAGR_g2060 crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E PAGR_g0181 primosomal protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PAGR_g0510 primosomal replication protein Prib K02686 priB; primosomal replication protein N E PAGR_g3181 primosomal replication protein N' PriC K04067 priC; primosomal replication protein N'' E PAGR_g0022 primosomal protein I DnaT K02317 dnaT; DNA replication protein DnaT E PAGR_g1576 exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PAGR_g3254 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PAGR_g3253 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PAGR_g1001 recombinase A RecA K03553 recA; recombination protein RecA E PAGR_g3579 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PAGR_g0003 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E PAGR_g0108 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PAGR_g0906 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PAGR_g1134 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PAGR_g3176 recombination protein RecR K06187 recR; recombination protein RecR E PAGR_g1118 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PAGR_g3257 recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC E PAGR_g1894 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PAGR_g1895 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PAGR_g1893 Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PAGR_g1452 helicase YejH K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E PAGR_g3254 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PAGR_g3253 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E PAGR_g3664 ATPase YjgR K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PAGR_g1416 DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PAGR_g0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PAGR_g2039 DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PAGR_g4051 transcriptional regulator HU subunit alpha HupA K05787 hupA; DNA-binding protein HU-alpha F PAGR_g3207 DNA-binding protein HU-beta HupB K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PAGR_g3138 RecT family phage recombinase K07455 recT; recombination protein RecT F PAGR_g0906 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PAGR_g1134 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PAGR_g3176 recombination protein RecR K06187 recR; recombination protein RecR F PAGR_g1266 DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F PAGR_g0114 DNA ligase YicF K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PAGR_g0456 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PAGR_g2407 integration host factor subunit alpha IhfA K04764 ihfA; integration host factor subunit alpha F PAGR_g2793 integration host factor subunit beta IhfB K05788 ihfB; integration host factor subunit beta E Supressor F PAGR_g1576 exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PAGR_g4101 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PAGR_g4003 UvrABC system protein A UvrA K03701 uvrA; excinuclease ABC subunit A F PAGR_g2940 excinuclease ABC subunit B UvrB K03702 uvrB; excinuclease ABC subunit B F PAGR_p048 global DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS F PAGR_g2002 DNA-binding protein H-NS Hns K03746 hns; DNA-binding protein H-NS F PAGR_g2867 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PAGR_g3320 DNA polymerase IV DinB K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PAGR_g3804 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D PAGR_g2346 nucleotidyl transferase/DNA polymerase DNA repair protein UmuC K03502 umuC; DNA polymerase V D PAGR_g3817 UV protection protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D PAGR_g2347 SOS-response transcriptional repressor UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D PAGR_g3090 putative prophage repressor protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PAGR_g1001 recombinase A RecA K03553 recA; recombination protein RecA D PAGR_g4019 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PAGR_g1118 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PAGR_g3508 DNA polymerase II PolB K02336 polB; DNA polymerase II [EC:2.7.7.7] D PAGR_g3877 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PAGR_g4002 single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein D PAGR_g2693 DNA-damage-inducible protein I DinI K12149 dinI; DNA-damage-inducible protein I D PAGR_g0654 putative DinI-like damage-inducible protein K12149 dinI; DNA-damage-inducible protein I D PAGR_g1002 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PAGR_g4135 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PAGR_g2749 helicase IV HelD K03658 helD; DNA helicase IV [EC:5.6.2.4] D PAGR_g2900 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PAGR_g1960 ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D PAGR_g3470 nucleoside triphosphate pyrophosphohydrolase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAGR_p173 MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAGR_g0126 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PAGR_g1044 ribonucleoside-diphosphate reductase 2 alpha subunit NrdE K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAGR_g1412 ribonucleoside-diphosphate reductase 1 alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAGR_g1411 ribonucleoside-diphosphate reductase 1 beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PAGR_g1043 ribonucleoside-diphosphate reductase 2 beta subunit NrdF K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024