+F Repair protein KO #

  DNA Repair and Recombination Proteins - Polyangium aurulentum

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D E8A73_033450 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D E8A73_041790 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D E8A73_007450 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E E8A73_026105 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E E8A73_024275 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E E8A73_035705 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E E8A73_003355 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E E8A73_035645 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D E8A73_000985 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_007020 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_020690 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_031760 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_033335 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_034635 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_040000 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D E8A73_033450 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D E8A73_041790 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D E8A73_007450 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E E8A73_026105 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E E8A73_006820 mismatch-specific DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E E8A73_014440 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E E8A73_038910 UdgX family uracil-DNA binding protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E E8A73_041825 UdgX family uracil-DNA binding protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E E8A73_042890 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E E8A73_007530 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E E8A73_033445 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E E8A73_024275 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E E8A73_035705 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E E8A73_047215 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E E8A73_045455 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E E8A73_003355 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E E8A73_035645 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E E8A73_014530 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E E8A73_035040 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E E8A73_020565 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E E8A73_018055 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E E8A73_031650 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E E8A73_031755 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E E8A73_011570 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E E8A73_030890 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E E8A73_033155 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E E8A73_042065 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E E8A73_015600 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E E8A73_006580 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E E8A73_015185 ATP-binding domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E E8A73_021340 ATP-binding domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E E8A73_029015 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E E8A73_011570 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E E8A73_031755 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F E8A73_019465 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F E8A73_019470 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F E8A73_013960 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F E8A73_018370 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F E8A73_043190 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E E8A73_032485 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E E8A73_039230 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E E8A73_018435 Smr/MutS family protein K07456 mutS2; DNA mismatch repair protein MutS2 E E8A73_019975 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E E8A73_017070 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E E8A73_043535 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E E8A73_020300 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E E8A73_035215 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E E8A73_013875 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E E8A73_010285 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E E8A73_002485 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E E8A73_038040 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E E8A73_011270 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E E8A73_017250 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E E8A73_010090 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E E8A73_031755 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E E8A73_015185 ATP-binding domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E E8A73_021340 ATP-binding domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E E8A73_029015 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E E8A73_011955 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E E8A73_028355 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E E8A73_040740 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E E8A73_014340 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E E8A73_013385 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_023215 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_028350 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_029390 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_031370 recombinase A K03553 recA; recombination protein RecA E E8A73_038400 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_040225 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_000995 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E E8A73_018130 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E E8A73_038485 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E E8A73_025575 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E E8A73_015865 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E E8A73_013315 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E E8A73_013385 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_023215 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_028350 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_029390 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_031370 recombinase A K03553 recA; recombination protein RecA E E8A73_038400 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_040225 recA; recombinase RecA K03553 recA; recombination protein RecA E E8A73_013880 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E E8A73_018055 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E E8A73_031650 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E E8A73_005760 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E E8A73_010080 recR; recombination mediator RecR K06187 recR; recombination protein RecR E E8A73_043380 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E E8A73_017715 hypothetical protein K03554 rdgC; recombination associated protein RdgC E E8A73_000995 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E E8A73_018130 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E E8A73_038485 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E E8A73_025575 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E E8A73_013315 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E E8A73_016830 Ku protein K10979 ku; DNA end-binding protein Ku E E8A73_016825 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F E8A73_031785 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F E8A73_033865 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F E8A73_013885 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F E8A73_031780 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F E8A73_025670 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F E8A73_018055 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F E8A73_031650 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F E8A73_005760 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F E8A73_010080 recR; recombination mediator RecR K06187 recR; recombination protein RecR F E8A73_031755 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F E8A73_011970 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F E8A73_015920 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F E8A73_001585 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F E8A73_001885 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F E8A73_030890 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F E8A73_033155 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F E8A73_042065 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F E8A73_015600 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D E8A73_036060 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D E8A73_013385 recA; recombinase RecA K03553 recA; recombination protein RecA D E8A73_023215 recA; recombinase RecA K03553 recA; recombination protein RecA D E8A73_028350 recA; recombinase RecA K03553 recA; recombination protein RecA D E8A73_029390 recA; recombinase RecA K03553 recA; recombination protein RecA D E8A73_031370 recombinase A K03553 recA; recombination protein RecA D E8A73_038400 recA; recombinase RecA K03553 recA; recombination protein RecA D E8A73_040225 recA; recombinase RecA K03553 recA; recombination protein RecA D E8A73_031705 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D E8A73_043380 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D E8A73_029755 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D E8A73_031375 DNA polymerase Y family protein K14161 imuB; protein ImuB D E8A73_031380 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D E8A73_011955 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D E8A73_028355 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase D E8A73_004335 DNA polymerase III K02347 polX; DNA polymerase (family X) D E8A73_006550 PHP domain-containing protein K02347 polX; DNA polymerase (family X) C DNA helicases D E8A73_042720 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D E8A73_001790 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D E8A73_045450 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D E8A73_000985 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_007020 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_020690 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_031760 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_033335 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_034635 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D E8A73_040000 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D E8A73_019290 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024