+F Repair protein KO #

  DNA Repair and Recombination Proteins - Cutibacterium acnes TypeIA2 P.acn31

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TIA2EST36_07095 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TIA2EST36_02775 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TIA2EST36_10990 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E TIA2EST36_01500 putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TIA2EST36_01150 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E TIA2EST36_02330 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TIA2EST36_08730 hydrolase, NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TIA2EST36_09920 hydrolase, NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TIA2EST36_05215 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TIA2EST36_07095 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TIA2EST36_02775 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E TIA2EST36_06125 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TIA2EST36_10990 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E TIA2EST36_01500 putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E TIA2EST36_07935 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E TIA2EST36_07220 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E TIA2EST36_01150 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TIA2EST36_09260 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E TIA2EST36_10935 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E TIA2EST36_07955 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E TIA2EST36_03880 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E TIA2EST36_04035 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E TIA2EST36_04015 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E TIA2EST36_04055 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E TIA2EST36_06515 DNA helicase II-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TIA2EST36_06540 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TIA2EST36_08610 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TIA2EST36_03880 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E TIA2EST36_07955 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F TIA2EST36_09200 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F TIA2EST36_09195 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F TIA2EST36_08940 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F TIA2EST36_05895 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F TIA2EST36_02685 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E TIA2EST36_02835 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E TIA2EST36_02830 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E TIA2EST36_05680 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E TIA2EST36_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E TIA2EST36_04435 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E TIA2EST36_01255 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E TIA2EST36_08465 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TIA2EST36_03615 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E TIA2EST36_01045 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E TIA2EST36_07955 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E TIA2EST36_06515 DNA helicase II-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TIA2EST36_06540 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TIA2EST36_08610 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E TIA2EST36_08025 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein E TIA2EST36_10900 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TIA2EST36_06525 putative exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E TIA2EST36_06520 exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E TIA2EST36_06530 exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E TIA2EST36_05000 protein RecA K03553 recA; recombination protein RecA E TIA2EST36_05725 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TIA2EST36_05730 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TIA2EST36_05720 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E TIA2EST36_05910 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E TIA2EST36_05000 protein RecA K03553 recA; recombination protein RecA E TIA2EST36_01560 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E TIA2EST36_00020 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E TIA2EST36_07340 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E TIA2EST36_04660 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E TIA2EST36_01055 recombination protein RecR K06187 recR; recombination protein RecR E TIA2EST36_06930 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E TIA2EST36_05725 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E TIA2EST36_05730 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E TIA2EST36_05720 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TIA2EST36_00060 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TIA2EST36_05170 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F TIA2EST36_00055 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TIA2EST36_05155 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F TIA2EST36_01240 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F TIA2EST36_08235 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TIA2EST36_04660 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F TIA2EST36_01055 recombination protein RecR K06187 recR; recombination protein RecR F TIA2EST36_07955 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F TIA2EST36_04560 ATP-dependent DNA helicase, RecQ family protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F TIA2EST36_04035 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F TIA2EST36_04015 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D TIA2EST36_08175 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D TIA2EST36_05000 protein RecA K03553 recA; recombination protein RecA D TIA2EST36_05055 LexA DNA binding domain protein K01356 lexA; repressor LexA [EC:3.4.21.88] D TIA2EST36_06930 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TIA2EST36_08085 hypothetical protein K14161 imuB; protein ImuB D TIA2EST36_08080 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D TIA2EST36_08025 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein D TIA2EST36_10900 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein D TIA2EST36_05005 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D TIA2EST36_05050 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D TIA2EST36_08730 hydrolase, NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TIA2EST36_09920 hydrolase, NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TIA2EST36_01705 hydrolase, NUDIX family protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D TIA2EST36_06910 hydrolase, NUDIX family protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D TIA2EST36_05215 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TIA2EST36_05070 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TIA2EST36_10310 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TIA2EST36_10315 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024