+D #

  Transfer RNA Biogenesis - Photorhabdus asymbiotica

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AEukaryotic type B 5'processing factors C Ribonucrease P B 3'processing and CCA adding factors C 3'processing factors D PAU_03506 ribonuclease i-like K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] C CCA adding factors D PAU_03552 cca; multifunctional cca protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonuclease complex C tRNA splicing ligase complex D PAU_00438 conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] C Other tRNA splicing factors B tRNA transport factors C tRNA export factors C tRNA import factors B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D PAU_01411 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAU_00664 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAU_00555 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAU_03156 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAU_02892 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAU_03085 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PAU_02501 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAU_01226 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PAU_02474 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] C Other AARSs D PAU_00130 conserved hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAU_03211 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAU_02763 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAU_01866 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAU_02841 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAU_01000 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAU_03987 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAU_01387 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAU_01870 pheS; phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAU_01871 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAU_00140 tyrS2; tyrosyl-trna synthetase 2 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAU_01938 tyrS; tyrosyl-tRNA synthetase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAU_00066 trpS; tryptophanyl-tRNA synthetase (tryptophan--tRNA ligase (trprs) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C Trans-editing factors D PAU_00184 dtd; d-tyrosyl-tRNA(tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] C AARS associated factors D PAU_01712 hinT; similar to histidine triad-like protein ycff of escherichia coli K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] B tRNA modification factors C Deaminases C Dihydorouridine synthases C Methylthiotransferase C Methyltransferases D PAU_03290 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D PAU_00665 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] C Psudouridine synthases D PAU_01451 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PAU_04027 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PAU_00688 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] C Thiolation factors D PAU_00158 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAU_01362 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAU_04154 conserved hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C KEOPS/EKC complex C Elongator complex C Elongator related proteins C Other tRNA modification factors D PAU_04174 conserved hypothetical Protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PAU_04081 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PAU_04397 trmE; trna modification gtpase trme K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D PAU_00045 gidA; trna uridine 5-carboxymethylaminomethyl modification enzyme gid (glucose-inhibited division protein a) K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PAU_01981 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] B tRNA degradation factors C TRAMP complex C Rapid tRNA decay (RTD) pathway factors D PAU_04060 cysQ; protein cysq K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] C Other tRNA degradation factors # AProkaryotic type B 5'processing factors C Ribonucrease P D PAU_04400 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] B 3'processing and CCA adding factors C 3'processing factors D PAU_01931 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D PAU_04378 rph; ribonuclease ph K00989 rph; ribonuclease PH [EC:2.7.7.56] D PAU_02113 rnb; exoribonuclease 2 K01147 rnb; exoribonuclease II [EC:3.1.13.1] D PAU_02432 rnd; ribonuclease d (rnase d) K03684 rnd; ribonuclease D [EC:3.1.13.5] D PAU_03506 ribonuclease i-like K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] C CCA adding factors D PAU_03552 cca; multifunctional cca protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonucleases C tRNA splicing ligases D PAU_00438 conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] C Other tRNA splicing factors B tRNA transport factors C tRNA export factors D PAU_00524 yjjK; abc transporter atp-binding protein yjjk K06020 ettA; energy-dependent translational throttle protein EttA B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D PAU_03156 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAU_00759 conserved hypothetical protein K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D PAU_00664 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] C Other AARSs D PAU_00140 tyrS2; tyrosyl-trna synthetase 2 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAU_01938 tyrS; tyrosyl-tRNA synthetase 1 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAU_00066 trpS; tryptophanyl-tRNA synthetase (tryptophan--tRNA ligase (trprs) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PAU_01866 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAU_00555 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAU_01226 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PAU_00130 conserved hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAU_03211 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAU_03987 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAU_02892 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAU_02841 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAU_02474 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PAU_00227 glyQ; glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D PAU_00228 glyS; glycyl-trna synthetase beta chain (glycine--trna ligase beta chain (glyrs) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D PAU_01000 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAU_01411 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAU_03085 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PAU_02501 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAU_01870 pheS; phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAU_01871 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAU_01387 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAU_02763 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAU_00809 yadB; glutamyl-q tRNA(asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] C Trans-editing factors D PAU_00184 dtd; d-tyrosyl-tRNA(tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D PAU_02882 conserved hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] B tRNA modification factors C Deaminases D PAU_01320 similar to ecoli yfhc protein, tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D PAU_02223 conserved hypothetical protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] C Dihydorouridine synthases D PAU_03915 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D PAU_03713 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D PAU_02921 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] C Methylthiotransferases D PAU_03145 miaB; trna-methylthiotransferase miab protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] C Methyltransferases D PAU_02476 conserved hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D PAU_02477 yecP; conserved hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D PAU_02814 smtA; s-adenosylmethionine-dependent methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D PAU_04228 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D PAU_03290 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D PAU_03202 trmD; tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D PAU_04397 trmE; trna modification gtpase trme K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D PAU_03186 yfiF; similar to putative trna/rrna methyltransferase yfif escherichia coli K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D PAU_01360 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D PAU_04344 yibK; hypothetical tRNA/rRNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D PAU_00665 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D PAU_01297 yfiC; conserved hypothetical protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] C Psudouridine synthases D PAU_01451 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PAU_04027 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PAU_00637 truC; tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D PAU_00688 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D PAU_00572 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] C Thiolation factors D PAU_01737 trmU; trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D PAU_01964 ydaO; conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D PAU_03736 tusA; sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PAU_00338 tusB; protein tusb (trna 2-thiouridine synthesizing protein b) K07237 tusB; tRNA 2-thiouridine synthesizing protein B D PAU_00337 tusC; protein tusc (trna 2-thiouridine synthesizing protein c) K07236 tusC; tRNA 2-thiouridine synthesizing protein C D PAU_00336 tusD; sulfurtransferase tusd K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D PAU_02731 tusE; sulfurtransferase TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D PAU_01364 iscA; iron-binding protein isca (iron-sulfur cluster assembly protein) K13628 iscA; iron-sulfur cluster assembly protein D PAU_00158 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAU_01362 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAU_04154 conserved hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAU_01207 ygfZ; conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ C KEOPS/EKC complex C Other tRNA modification factors D PAU_00045 gidA; trna uridine 5-carboxymethylaminomethyl modification enzyme gid (glucose-inhibited division protein a) K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PAU_04081 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PAU_00695 miaE; trna-(ms[2]io[6]a)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D PAU_01433 yfcK; conserved hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D PAU_03491 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D PAU_03410 Queuosine biosynthesis protein queC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PAU_00676 ygcM; putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D PAU_00675 ygcF; conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PAU_00612 queF; conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D PAU_04085 yjeS; conserved hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D PAU_03853 conserved hypothetical Protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D PAU_01981 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D PAU_03490 Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D PAU_03436 Thiamine biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAU_00661 tilS; tRNA (ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D PAU_01814 ypfI; putative acyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D PAU_02436 yeaZ; conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D PAU_04174 conserved hypothetical Protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PAU_03556 gcp; o-sialoglycoprotein endopeptidase (glycoprotease) K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D PAU_04084 yjeE; conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D PAU_00599 conserved hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase B tRNA degradation factors C PAU_04074 rnr; ribonuclease r (rnase r) (vacb protein) K12573 rnr; ribonuclease R [EC:3.1.13.1] C PAU_04025 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 17, 2025