+F Repair protein KO #

  DNA Repair and Recombination Proteins - Photorhabdus asymbiotica

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PAU_03171 ogt; methylated-dna--protein-cysteine s-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E PAU_01276 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PAU_03291 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PAU_02114 nth; endonuclease iii (dna-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PAU_01123 mutT; mutator mutt protein (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo dgtpase) (dgtp pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAU_00735 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAU_01677 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAU_02363 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAU_04375 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PAU_03171 ogt; methylated-dna--protein-cysteine s-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E PAU_01276 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PAU_03291 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PAU_00226 tag; dna-3-methyladenine glycosylase i (3-methyladenine-dna glycosylase i constitutive) (tag i) (dna-3-methyladenine glycosidase i) K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PAU_04363 mutM; formamidopyrimidine DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PAU_02114 nth; endonuclease iii (dna-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PAU_01983 xthA; exodeoxyribonuclease iii (exonuclease iii) (exo iii) (ap endonucleas vi) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PAU_01679 nfo; endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E PAU_00401 nfi; endonuclease V (deoxyinosine 3'endoduclease) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E PAU_01213 recJ; ssdna exonuclease, 5'--> 3' specific (ssdna exonuclease recj) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PAU_01408 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAU_00221 yicF; similar to putative dna ligase-like protein yicf of escherichia coli K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PAU_00299 polA; dna polymerase I polA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PAU_03908 uvrA; uvrabc system protein a (uvra protein) (excinuclease abc subunit a) K03701 uvrA; excinuclease ABC subunit A E PAU_02936 uvrB; uvrabc system protein b (protein uvrb) (excinuclease abc subunit b) K03702 uvrB; excinuclease ABC subunit B E PAU_02567 uvrC; uvrabc system protein c (protein uvrc) (excinuclease abc subunit c) K03703 uvrC; excinuclease ABC subunit C E PAU_04117 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PAU_00299 polA; dna polymerase I polA K02335 polA; DNA polymerase I [EC:2.7.7.7] E PAU_01408 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAU_00221 yicF; similar to putative dna ligase-like protein yicf of escherichia coli K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PAU_00350 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PAU_00351 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PAU_04191 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PAU_00210 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PAU_01723 mfd; transcription-repair coupling factor (trcf) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PAU_00696 mutS; dna mismatch repair protein muts K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PAU_04082 mutL; dna mismatch repair protein mutl K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E PAU_01092 mutH; dna mismatch repair protein muth (methyl-directed mismatch repai protein) K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E PAU_01691 sbcB; exodeoxyribonuclease i (exonuclease i) (dn deoxyribophosphodiesterase) K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PAU_01825 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PAU_03437 Probable exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PAU_00659 dnaE; dna polymerase iii alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PAU_00002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PAU_03986 holC; dna polymerase iii, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PAU_03158 holA; dna-directed dna polymerase iii delta chain K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PAU_01710 holB; dna-directed dna polymerase iii delta' chain K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PAU_00861 dnaQ; putative DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PAU_03388 DNA polymerase III subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E PAU_00488 holD; DNA polymerase III, Psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E PAU_01845 holE; dna polymerase iii, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E PAU_01408 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PAU_00221 yicF; similar to putative dna ligase-like protein yicf of escherichia coli K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PAU_04117 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PAU_03907 ssb; single-stranded dna-binding protein K03111 ssb; single-strand DNA-binding protein E PAU_00069 dam; DNA adenine methylase (deoxyadenosyl-methyltransferase (dna adenine methyltransferase) K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PAU_04395 n6 adenine-specific dna methyltransferase, d12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PAU_04304 putative DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PAU_00591 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PAU_00589 recC; exodeoxyribonuclease v gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PAU_00592 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PAU_03212 Protein recA (Recombinase A) K03553 recA; recombination protein RecA E PAU_02470 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PAU_02469 ruvB; RuvB protein, holliday junction helicase subunit A K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PAU_02471 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PAU_04247 priA; primosomal protein n'(= factor y)(putative helicase) (primosoma protein n') K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PAU_04071 priB; primosomal replication protein n K02686 priB; primosomal replication protein N E PAU_03390 Primosomal replication protein N K04067 priC; primosomal replication protein N'' E PAU_01691 sbcB; exodeoxyribonuclease i (exonuclease i) (dn deoxyribophosphodiesterase) K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PAU_03504 sbcC; nuclease sbccd subunit c K03546 sbcC; DNA repair protein SbcC/Rad50 E PAU_03503 sbcD; nuclease sbccd subunit d K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PAU_03212 Protein recA (Recombinase A) K03553 recA; recombination protein RecA E PAU_00521 radA; dna repair protein rada K04485 radA; DNA repair protein RadA/Sms E PAU_00003 recF; dna replication and repair protein recf K03629 recF; DNA replication and repair protein RecF E PAU_00196 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PAU_01213 recJ; ssdna exonuclease, 5'--> 3' specific (ssdna exonuclease recj) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PAU_01307 recO; dna repair protein reco (recombination protein o) K03584 recO; DNA repair protein RecO (recombination protein O) E PAU_03386 Recombination protein recR K06187 recR; recombination protein RecR E PAU_01273 recN; dna repair protein recn (recombination protein n) K03631 recN; DNA repair protein RecN (Recombination protein N) E PAU_03508 rdgC; recombination-associated protein rdgc K03554 rdgC; recombination associated protein RdgC E PAU_02470 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PAU_02469 ruvB; RuvB protein, holliday junction helicase subunit A K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PAU_02471 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PAU_02722 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E PAU_01666 yejH; conserved hypothetical protein K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E PAU_03504 sbcC; nuclease sbccd subunit c K03546 sbcC; DNA repair protein SbcC/Rad50 E PAU_03503 sbcD; nuclease sbccd subunit d K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PAU_01558 gyrA; dna gyrase subunit a K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PAU_00004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PAU_02074 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PAU_00403 dbhA; dna-binding protein hu-alpha (ns2) (hu-2) K05787 hupA; DNA-binding protein HU-alpha F PAU_03414 DNA-binding protein HU-beta (NS1) (HU-1) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PAU_01213 recJ; ssdna exonuclease, 5'--> 3' specific (ssdna exonuclease recj) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PAU_01307 recO; dna repair protein reco (recombination protein o) K03584 recO; DNA repair protein RecO (recombination protein O) F PAU_03386 Recombination protein recR K06187 recR; recombination protein RecR F PAU_01408 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F PAU_00221 yicF; similar to putative dna ligase-like protein yicf of escherichia coli K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PAU_03714 fis; dna-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PAU_01872 ihfA; integration host factor subunit alpha (ihf-alpha) K04764 ihfA; integration host factor subunit alpha F PAU_02827 ihfB; integration host factor beta-subunit (ihf-beta) K05788 ihfB; integration host factor subunit beta E Supressor F PAU_01691 sbcB; exodeoxyribonuclease i (exonuclease i) (dn deoxyribophosphodiesterase) K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PAU_04111 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PAU_03908 uvrA; uvrabc system protein a (uvra protein) (excinuclease abc subunit a) K03701 uvrA; excinuclease ABC subunit A F PAU_02936 uvrB; uvrabc system protein b (protein uvrb) (excinuclease abc subunit b) K03702 uvrB; excinuclease ABC subunit B F PAU_03196 hns; dna-binding protein h-ns (histone-like protein hlp-ii) (protein h1 (protein b1) K03746 hns; DNA-binding protein H-NS F PAU_02028 hns; dna-binding protein h-ns (histone-like protein hlp-ii) K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PAU_03222 DNA polymerase IV (DNA-damage-inducible protein P) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D PAU_03212 Protein recA (Recombinase A) K03553 recA; recombination protein RecA D PAU_03927 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PAU_01273 recN; dna repair protein recn (recombination protein n) K03631 recN; DNA repair protein RecN (Recombination protein N) D PAU_03907 ssb; single-stranded dna-binding protein K03111 ssb; single-strand DNA-binding protein D PAU_02702 dinI; dna-damage-inducible protein i K12149 dinI; DNA-damage-inducible protein I B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PAU_04147 rep; Rep helicase, a single-stranded DNA dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PAU_02740 helD; dna helicase iv K03658 helD; DNA helicase IV [EC:5.6.2.4] D PAU_02915 dinG; probable atp-dependent helicase (dna-damage-inducible protein g) K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PAU_02438 conserved hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D PAU_01123 mutT; mutator mutt protein (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo dgtpase) (dgtp pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAU_00735 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAU_01677 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAU_02363 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAU_04375 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PAU_03174 nrdE; ribonucleoside-diphosphate reductase alpha-chain (ribonucleotid reductase r1 subunit) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAU_01556 nrdA; ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAU_03175 nrdF; ribonucleoside-diphosphate reductase 2 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PAU_01555 nrdB; ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024