+F Repair protein KO #

  DNA Repair and Recombination Proteins - Plasmodium berghei

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D 55150495 deoxyribodipyrimidine photo-lyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E 55150212 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E 55151650 DNA-3-methyladenine glycosylase, putative K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E 55149643 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E 55149252 N-glycosylase/DNA lyase, putative K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E 55151147 endonuclease III-like protein 1, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E 55151823 DNA-(apurinic or apyrimidinic site) lyase 1, putative K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2] D Long Patch-BER factors E DNA polymerase delta complex F 55148316 DNA polymerase delta catalytic subunit, putative K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] F 55148175 DNA polymerase delta small subunit, putative K02328 POLD2; DNA polymerase delta subunit 2 E DNA polymerase epsilon complex F 55150657 DNA polymerase epsilon catalytic subunit A, putative K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] F 55152529 DNA polymerase epsilon subunit B, putative K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] E 55150745 proliferating cell nuclear antigen 1, putative K04802 PCNA; proliferating cell nuclear antigen E 55152453 proliferating cell nuclear antigen 2 K04802 PCNA; proliferating cell nuclear antigen E 55149980 flap endonuclease 1, putative K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E 55152055 DNA ligase I, putative K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors E 55150758 bifunctional polynucleotide phosphatase/kinase, putative K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex F 55150951 DNA repair protein RAD23, putative K10839 RAD23; UV excision repair protein RAD23 E Cul4-DDB2 complex F 55149131 E3 ubiquitin-protein ligase RBX1, putative K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E NER4 complex F 55152679 DNA repair protein rhp16, putative K15083 RAD16; DNA repair protein RAD16 D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F 55149139 DNA-directed RNA polymerase II subunit RPB1, putative K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] F 55148046 DNA-directed RNA polymerase II subunit RPB2, putative K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] F 55149311 DNA-directed RNA polymerase II subunit RPB3, putative K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 F 55147955 DNA-directed RNA polymerase II 16 kDa subunit, putative K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 F 55150772 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 F 55148130 DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 F 55148419 DNA-directed RNA polymerase II subunit RPB7, putative K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 F 55152332 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F 55147787 DNA-directed RNA polymerase II subunit RPB9, putative K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 F 55149122 DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F 55152064 DNA-directed RNA polymerase II subunit RPB11, putative K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 F 55151914 DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 E Cul4-CSA complex F 55149131 E3 ubiquitin-protein ligase RBX1, putative K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E Other TCR factor F 55149227 transcription elongation factor 1, putative K25829 ELOF1; transcription elongation factor 1 D TFIIH complex E 55148510 TFIIH basal transcription factor complex helicase XPB subunit, putative K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E 55149423 TFIIH basal transcription factor complex helicase XPD subunit, putative K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E 55152165 general transcription factor IIH subunit 2, putative K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E 55150667 RNA polymerase II transcription factor B subunit 4, putative K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E 55152616 RNA polymerase II transcription factor B subunit 2, putative K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 E 55151399 RNA polymerase II transcription factor B subunit 5, putative K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E 55150978 MO15-related protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E 55151614 cyclin 1, putative K06634 CCNH; cyclin H E 55150481 CDK-activating kinase assembly factor MAT1, putative K10842 MNAT1; CDK-activating kinase assembly factor MAT1 D RPA (replication factor A) E 55149991 replication protein A1, large subunit, putative K07466 RFA1; replication factor A1 E 55151401 replication factor A protein 3, putative K10740 RPA3; replication factor A3 D Other NER factors E 55151060 DNA repair protein RAD14, putative K10847 XPA; DNA-repair protein complementing XP-A cells E 55147934 ERCC1 nucleotide excision repair protein, putative K10849 ERCC1; DNA excision repair protein ERCC-1 E 55150812 DNA repair endonuclease XPF, putative K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E 55147960 DNA repair protein RAD2, putative K10846 ERCC5; DNA excision repair protein ERCC-5 E 55152055 DNA ligase I, putative K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] E 55149072 cytosolic iron-sulfur assembly component 2, putative K26403 CIAO2; cytosolic iron-sulfur assembly component 2 C MMR (mismatch excision repair) D Mismatch and loop recognition factors E 55149107 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2 E 55150091 DNA mismatch repair protein MSH2, putative K08735 MSH2; DNA mismatch repair protein MSH2 E 55150413 DNA mismatch repair protein MSH6, putative K08737 MSH6; DNA mismatch repair protein MSH6 D MutL homologs E 55149757 DNA mismatch repair protein MLH, putative K08734 MLH1; DNA mismatch repair protein MLH1 E 55147859 DNA mismatch repair protein PMS1, putative K10858 PMS2; DNA mismatch repair protein PMS2 D DNA polymerase delta complex E 55148316 DNA polymerase delta catalytic subunit, putative K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] E 55148175 DNA polymerase delta small subunit, putative K02328 POLD2; DNA polymerase delta subunit 2 D RPA (replication factor A) E 55149991 replication protein A1, large subunit, putative K07466 RFA1; replication factor A1 E 55151401 replication factor A protein 3, putative K10740 RPA3; replication factor A3 D RFC (replication factor C) E 55148085 replication factor C subunit 1, putative K10754 RFC1; replication factor C subunit 1 E 55148069 replication factor C subunit 2, putative K10755 RFC2_4; replication factor C subunit 2/4 E 55152592 replication factor C subunit 4, putative K10755 RFC2_4; replication factor C subunit 2/4 E 55149820 replication factor C subunit 5, putative K10756 RFC3_5; replication factor C subunit 3/5 E 55151609 replication factor C subunit 3, putative K10756 RFC3_5; replication factor C subunit 3/5 D Other MMR factors E 55150745 proliferating cell nuclear antigen 1, putative K04802 PCNA; proliferating cell nuclear antigen E 55152453 proliferating cell nuclear antigen 2 K04802 PCNA; proliferating cell nuclear antigen E 55148798 exonuclease I, putative K10746 EXO1; exonuclease 1 [EC:3.1.-.-] E 55152055 DNA ligase I, putative K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex E 55147811 double-strand break repair protein MRE11, putative K10865 MRE11; double-strand break repair protein MRE11 E 55147664 DNA repair protein RAD50, putative K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex E 55147811 double-strand break repair protein MRE11, putative K10865 MRE11; double-strand break repair protein MRE11 E 55147664 DNA repair protein RAD50, putative K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D BRCA complex E 55149855 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E 55149855 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51 D Rad52 family proteins D Rad54 family proteins E 55151120 DNA repair and recombination protein RAD54, putative K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] D RecQ family DNA helicases E 55149267 ATP-dependent DNA helicase Q1, putative K10901 BLM; bloom syndrome protein [EC:5.6.2.4] D Bloom's syndrome complex (BTR) E 55149267 ATP-dependent DNA helicase Q1, putative K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E 55151956 DNA topoisomerase 3, putative K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D RPA (replication factor A) E 55149991 replication protein A1, large subunit, putative K07466 RFA1; replication factor A1 E 55151401 replication factor A protein 3, putative K10740 RPA3; replication factor A3 D Protein phosphatase 4 E 55149357 serine/threonine protein phosphatase 4 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] D AP-5 complex E 55150915 AP-5 complex subunit sigma-1, putative K19024 AP5S1; AP-5 complex subunit sigma-1 D SMC5-SMC6 complex E 55149700 structural maintenance of chromosomes protein 5, putative K22803 SMC5; structural maintenance of chromosomes protein 5 E 55151249 structural maintenance of chromosomes protein 6, putative K22804 SMC6; structural maintenance of chromosomes protein 6 E 55150807 conserved Plasmodium protein, unknown function K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27] D Other HR factors E 55148766 conserved Plasmodium protein, unknown function K10881 SHFM1; 26 proteasome complex subunit DSS1 E 55152576 HD superfamily phosphohydrolase protein, putative K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-] E 55149974 AAA family ATPase, putative K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] E 55150928 metalloprotease, putative K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex E 55147811 double-strand break repair protein MRE11, putative K10865 MRE11; double-strand break repair protein MRE11 E 55147664 DNA repair protein RAD50, putative K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) E 55149267 ATP-dependent DNA helicase Q1, putative K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E 55151956 DNA topoisomerase 3, putative K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D FANCD2-I complex D Downstream FA components D Other FA pathway factors E 55149855 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51 C Other DSBR factors D Protein phosphatase 6 E 55148239 serine/threonine protein phosphatase 6 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16] D Ubiquitin ligases D Others E 55151651 WD repeat-containing protein 79, putative K23314 WRAP53; telomerase Cajal body protein 1 E 55148478 WD repeat-containing protein 70, putative K24752 WDR70; WD repeat-containing protein 70 B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group D 55152283 ubiquitin-conjugating enzyme E2, putative K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] D 55149129 ubiquitin-conjugating enzyme E2, putative K10574 UBE2B; ubiquitin-conjugating enzyme E2 B [EC:2.3.2.23] D 55151920 DNA repair protein RAD5, putative K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-] D 55148153 ubiquitin-conjugating enzyme E2, putative K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant D 55151268 ubiquitin-conjugating enzyme E2 N, putative K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] C Other TLS factors D 55150745 proliferating cell nuclear antigen 1, putative K04802 PCNA; proliferating cell nuclear antigen D 55152453 proliferating cell nuclear antigen 2 K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex D 55148069 replication factor C subunit 2, putative K10755 RFC2_4; replication factor C subunit 2/4 D 55152592 replication factor C subunit 4, putative K10755 RFC2_4; replication factor C subunit 2/4 D 55149820 replication factor C subunit 5, putative K10756 RFC3_5; replication factor C subunit 3/5 D 55151609 replication factor C subunit 3, putative K10756 RFC3_5; replication factor C subunit 3/5 C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex D 55151367 conserved protein, unknown function K23387 GET4; golgi to ER traffic protein 4 C SOSS complex C Other check point factors D 55148957 14-3-3 protein K06630 YWHAE; 14-3-3 protein epsilon D 55150747 14-3-3 protein, putative K06630 YWHAE; 14-3-3 protein epsilon D 55151553 vacuolar protein sorting-associated protein 4, putative K12196 VPS4; vacuolar protein-sorting-associated protein 4 B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D 55151565 exonuclease V, mitochondrial, putative K17815 EXO5; exonuclease V [EC:3.1.-.-] C Helicases C PSO4 complex D 55148181 pre-mRNA-processing factor 19, putative K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27] D 55148479 pre-mRNA-splicing factor CEF1, putative K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 D 55151143 pre-mRNA-splicing factor CWF7, putative K12861 BCAS2; pre-mRNA-splicing factor SPF27 D 55148121 pre-mRNA-splicing factor PRP46, putative K12862 PLRG1; pleiotropic regulator 1 C Modulation of nucleotide pools D 55149668 deoxyuridine 5'-triphosphate nucleotidohydrolase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D 55148687 ribonucleoside-diphosphate reductase large subunit, putative K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D 55150301 ribonucleoside-diphosphate reductase small chain, putative K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] D 55150992 ribonucleoside-diphosphate reductase small chain, putative K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D 55150495 deoxyribodipyrimidine photo-lyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E 55150212 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E 55151650 DNA-3-methyladenine glycosylase, putative K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E 55149643 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E 55151147 endonuclease III-like protein 1, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E 55150500 ATP-dependent DNA helicase UvrD, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F 55151705 DNA-directed RNA polymerase, alpha subunit, putative K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F 55152091 DNA-directed RNA polymerase subunit alpha, putative K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E 55150500 ATP-dependent DNA helicase UvrD, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E 55150446 single-stranded DNA-binding protein, putative K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F 55152421 DNA gyrase subunit A, putative K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F 55152581 DNA gyrase subunit B, putative K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D 55150446 single-stranded DNA-binding protein, putative K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D 55149668 deoxyuridine 5'-triphosphate nucleotidohydrolase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 23, 2026