+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Candidatus Promineifilum breve
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
E CFX0092_A0951 conserved protein of unknown function K03265 ETF1; peptide chain release factor subunit 1
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E CFX0092_A2577 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E CFX0092_A2972 rnjA; Ribonuclease J 1 K12574 rnj; ribonuclease J [EC:3.1.-.-]
E CFX0092_A3412 rny; Ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
E CFX0092_A1991 putative 3'-5' exoribonuclease YhaM K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Helicases
E CFX0092_B0841 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E CFX0092_A1330 ATP-dependent DNA helicase RecQ (modular protein) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E CFX0092_A3638 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E CFX0092_A0161 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E CFX0092_A1129 rho; transcription termination factor K03628 rho; transcription termination factor Rho
E CFX0092_A0954 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E CFX0092_A1402 Phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E CFX0092_A0963 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
E CFX0092_A3009 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
E CFX0092_A1193 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
E CFX0092_A1281 ppk; Polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E CFX0092_B0050 Polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
E CFX0092_A3385 putative Multifunctional CCA protein [Includes: CCA-adding enzyme; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase] K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024