+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Pseudoalteromonas sp. Bsw20308
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D D172_013735 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D D172_005205 kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D D172_003170 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C D172_013730 GTPase Era K03595 era; GTPase
C D172_002420 obgE; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C D172_014410 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
C D172_011080 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor
C D172_012420 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C D172_014330 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C D172_001595 nusG; transcription antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D D172_000710 23S rRNA pseudouridine synthase F K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D D172_015125 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D D172_002555 rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D D172_000075 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D D172_003660 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D D172_002185 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D D172_002735 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D D172_007090 yebU; RNA methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D D172_000215 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D D172_014980 ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D D172_003560 tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D D172_015550 16S rRNA methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D D172_009930 SAM-dependent methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D D172_003760 23S rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D D172_013045 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D D172_018725 23S rRNA methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D D172_004885 23S rRNA methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D D172_012165 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D D172_011260 23S rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D D172_011455 23S rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D D172_001890 rRNA methyltransferase K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D D172_008255 rlmL; 23S rRNA methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D D172_011880 23S rRNA methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D D172_021040 23S rRNA (adenine(2503)-C2)-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D D172_013710 SAM-dependent methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D D172_008305 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D D172_002595 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D D172_011030 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D D172_018255 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D D172_009900 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D D172_007005 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D D172_005535 rluD; 23S rRNA pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D D172_008125 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D D172_019530 23S rRNA pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C D172_004450 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C D172_002830 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C D172_005585 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C D172_000665 ribosomal protein S12 methylthiotransferase K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C D172_002160 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C D172_005840 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C D172_008095 50S ribosomal protein L16 arginine hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C D172_013735 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C D172_007000 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C D172_015730 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C D172_002720 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C D172_000850 ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C D172_005900 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C D172_002950 RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C D172_013730 GTPase Era K03595 era; GTPase
C D172_003165 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C D172_021005 ribosome-associated GTPase EngA K03977 engA; GTPase
C D172_002420 obgE; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C D172_017030 ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
C D172_001735 GTPase HflX K03665 hflX; GTPase
C D172_009600 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C D172_000040 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C D172_012410 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C D172_012425 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C D172_001125 ribosome-associated protein K14761 rlbA; ribosome-associated protein
C D172_012160 ribosome silencing factor K09710 ybeB; ribosome-associated protein
C D172_012045 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
C D172_013050 RNA-binding protein K07574 yhbY; RNA-binding protein
C D172_016010 hypothetical protein K09889 yjgA; ribosome-associated protein
C D172_008850 ribosome modulation factor K03812 rmf; ribosome modulation factor
C D172_003410 hypothetical protein K05808 hpf; ribosome hibernation promoting factor
C D172_004555 30S ribosomal protein S30 K05809 raiA; ribosome-associated inhibitor A
C D172_011965 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase
C D172_007020 hypothetical protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024