+E Transcription factors KO
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Transcription Factors - Pectobacterium carotovorum subsp. carotovorum PCC21
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D PCC21_018610 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PCC21_021690 Modification methylase FnuDI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D PCC21_020890 DNA-binding transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D PCC21_004550 L-rhamnose operon transcriptional activator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D PCC21_004540 transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D PCC21_014560 helix-turn-helix domain-containing protein K05372 ybtA; AraC family transcriptional regulator
D PCC21_036690 right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D PCC21_015550 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D PCC21_015560 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D PCC21_008160 ADA regulatory protein (methylated-DNA--protein-cysteine methyltransferase) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PCC21_000970 transcriptional activator FtrA K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D PCC21_009570 DNA-binding transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PCC21_037250 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PCC21_040010 DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D PCC21_001660 transcriptional activator protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PCC21_036520 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D PCC21_040260 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PCC21_021290 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PCC21_036820 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PCC21_008250 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D PCC21_020740 transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D PCC21_014200 transcriptional regulator CysB-like protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D PCC21_013680 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PCC21_028970 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PCC21_014050 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D PCC21_002700 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D PCC21_040150 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D PCC21_016870 DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D PCC21_039210 DNA-binding transcriptional repressor GlpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D PCC21_013950 transcriptional regulator, LacI family K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D PCC21_006640 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PCC21_000910 putative regulator of xyl operon K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PCC21_007610 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PCC21_029930 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PCC21_042630 transcriptional repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PCC21_040430 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D PCC21_035980 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D PCC21_003630 transcriptional regulator, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D PCC21_022190 transcriptional regulator, LacI family K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D PCC21_041980 LacI family transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D PCC21_024950 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D PCC21_009400 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D PCC21_039360 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D PCC21_009110 phosphonate C-P lyase system transcriptional regulator PhnF, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D PCC21_020090 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D PCC21_035610 transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PCC21_010210 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D PCC21_034680 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D PCC21_005450 DNA-binding transcriptional repressor ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D PCC21_041820 galactonate operon transcriptional repressor K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D PCC21_017180 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PCC21_023120 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PCC21_035130 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PCC21_038280 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PCC21_008320 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
C TetR/AcrR family
D PCC21_026610 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PCC21_011040 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D PCC21_001390 nucleoid occlusion protein K05501 slmA; TetR/AcrR family transcriptional regulator
D PCC21_031250 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PCC21_040240 DNA-binding transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D PCC21_021330 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D PCC21_042500 DNA-binding transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D PCC21_017250 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PCC21_029060 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PCC21_010890 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D PCC21_014590 quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D PCC21_000950 ExpR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
C MarR family
D PCC21_024890 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PCC21_033300 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D PCC21_029890 transcriptional regulator of organic hydroperoxide resistance gene ohr K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D PCC21_008700 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D PCC21_011290 copper efflux regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PCC21_014890 putative transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
C Fur family
D PCC21_012360 ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PCC21_005340 zinc uptake transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D PCC21_037660 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D PCC21_019450 pectin degradation repressor K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D PCC21_038440 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PCC21_021470 fumarate/nitrate reduction transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PCC21_025830 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D PCC21_030690 DNA-binding transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D PCC21_034500 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D PCC21_035490 transcription regulator ArsR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D PCC21_042280 putative DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D PCC21_018380 DNA-binding transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PCC21_002010 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PCC21_002450 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PCC21_036720 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D PCC21_005170 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D PCC21_005790 sugar fermentation stimulation protein K07724 ner; Ner family transcriptional regulator
D PCC21_021800 hypothetical protein K07724 ner; Ner family transcriptional regulator
D PCC21_030350 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D PCC21_037310 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D PCC21_036150 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D PCC21_004790 PnuC nicotinamide ribonucleoside uptake permease K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D PCC21_042100 HipB protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D PCC21_003700 putative transcription regulator containing HTH domain K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D PCC21_032320 Sigma 54 interacting domain protein K11908 vasH; sigma-54 dependent transcriptional regulator
D PCC21_008080 putative EBP family regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D PCC21_031310 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D PCC21_013000 DNA-binding transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein
D PCC21_002520 Putative molybdenum-pterin-binding-protein K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D PCC21_040360 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D PCC21_039960 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PCC21_016250 Qin prophage, bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D PCC21_013580 putative beta-glucoside operon antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
D PCC21_013820 transcriptional antiterminator, BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D PCC21_007630 transcriptional antiterminator, BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D PCC21_025470 beta-glucoside operon antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D PCC21_010780 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PCC21_001900 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D PCC21_005770 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D PCC21_012310 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D PCC21_021010 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D PCC21_000790 mannitol repressor protein K02562 mtlR; mannitol operon repressor
D PCC21_024260 hypothetical protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PCC21_011670 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D PCC21_024380 phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D PCC21_024350 phage shock protein C, PspC K03973 pspC; phage shock protein C
D PCC21_002770 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D PCC21_021730 transcriptional regulator, putative K07733 alpA; prophage regulatory protein
D PCC21_016350 hypothetical protein K07733 alpA; prophage regulatory protein
D PCC21_036990 hypothetical protein K07735 algH; putative transcriptional regulator
D PCC21_031490 DnaK transcriptional regulator DksA K06204 dksA; RNA polymerase-binding transcription factor
D PCC21_010570 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D PCC21_032790 DNA-binding transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
D PCC21_004360 RtcR K14414 rtcR; transcriptional regulatory protein RtcR
D PCC21_035960 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0