+D GENES KO
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KEGG Orthology (KO) - Pyrobaculum calidifontis
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pcl00010]
D Pcal_1032 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Pcal_0606 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Pcal_0111 fructose-bisphosphate aldolase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Pcal_0817 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Pcal_0632 glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D Pcal_0633 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Pcal_1668 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Pcal_0022 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Pcal_0029 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Pcal_0162 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Pcal_0313 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Pcal_1405 Pyruvate dehydrogenase (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Pcal_1404 Transketolase, central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Pcal_1403 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_0667 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_1769 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2051 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2050 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_0668 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_1770 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_2052 pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_0665 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1767 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1768 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0666 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0561 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0108 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0107 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_0560 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_1311 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Pcal_1581 Alcohol dehydrogenase GroES domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D Pcal_0166 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0380 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1562 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1854 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D Pcal_1855 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D Pcal_0664 glyceraldehyde-3-phosphate ferredoxin oxidoreductase K11389 gapor; glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) [EC:1.2.7.6]
C 00020 Citrate cycle (TCA cycle) [PATH:pcl00020]
D Pcal_0154 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Pcal_0563 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Pcal_0804 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Pcal_0579 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_0561 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0108 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0107 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_0560 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_1658 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Pcal_1657 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Pcal_2127 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pcal_1388 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pcal_2128 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pcal_1389 ferredoxin K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pcal_2129 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Pcal_2130 succinate dehydrogenase subunit D K18860 sdhD; succinate dehydrogenase subunit D
D Pcal_1060 fumarase alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Pcal_1059 fumarase beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Pcal_1699 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Pcal_1405 Pyruvate dehydrogenase (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Pcal_1404 Transketolase, central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Pcal_1403 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Pcal_0667 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_1769 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2051 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2050 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_0668 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_1770 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_2052 pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_0665 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1767 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1768 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0666 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:pcl00030]
D Pcal_0606 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Pcal_0893 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pcal_0894 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pcal_0662 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Pcal_0568 3-hexulose-6-phosphate synthase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43]
D Pcal_0808 3-hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D Pcal_0786 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Pcal_0041 PfkB domain protein K26208 E2.7.1.239; alpha-D-ribose-1-phosphate 5-kinase (ATP) [EC:2.7.1.239]
D Pcal_1127 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Pcal_1040 tungsten-dependent formaldehyde:ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Pcal_2057 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Pcal_0204 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Pcal_0077 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Pcal_1233 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Pcal_0111 fructose-bisphosphate aldolase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
C 00040 Pentose and glucuronate interconversions
D Pcal_1072 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:pcl00051]
D Pcal_0606 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Pcal_2157 alpha-phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Pcal_1971 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Pcal_0043 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Pcal_1072 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D Pcal_0111 fructose-bisphosphate aldolase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Pcal_0817 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:pcl00052]
D Pcal_0776 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Pcal_0777 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Pcal_0885 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Pcal_1032 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Pcal_0917 Alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:pcl00053]
D Pcal_1422 2-dehydro-3-deoxyglucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
C 00500 Starch and sucrose metabolism [PATH:pcl00500]
D Pcal_0917 Alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Pcal_0630 glycoside hydrolase, family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Pcal_1038 glycogen synthase (ADP-glucose/UDP-glucose) K00703 glgA; starch synthase [EC:2.4.1.21]
D Pcal_1041 glycosyl transferase, group 1 K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Pcal_1039 Alpha-amylase K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1]
D Pcal_0768 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Pcal_1359 trehalose synthase (ADP-glucose) K13057 treT; trehalose synthase [EC:2.4.1.245]
D Pcal_1363 trehalose 6-phosphate synthase / trehalose 6-phosphatase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
D Pcal_1032 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Pcal_0606 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pcl00520]
D Pcal_1000 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Pcal_1032 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Pcal_0776 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Pcal_0777 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Pcal_0885 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Pcal_0606 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Pcal_2157 alpha-phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Pcal_1971 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Pcal_0043 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Pcal_0404 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00620 Pyruvate metabolism [PATH:pcl00620]
D Pcal_0166 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0380 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1562 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0667 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_1769 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2051 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2050 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_0668 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_1770 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_2052 pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_0665 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1767 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1768 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0666 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0561 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0108 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0107 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_0560 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_1405 Pyruvate dehydrogenase (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Pcal_1404 Transketolase, central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Pcal_1403 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_1311 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Pcal_1581 Alcohol dehydrogenase GroES domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D Pcal_0029 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Pcal_0787 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Pcal_1854 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D Pcal_1855 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D Pcal_0539 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Pcal_0564 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Pcal_1699 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Pcal_1060 fumarase alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Pcal_1059 fumarase beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Pcal_1392 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Pcal_0162 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Pcal_0313 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Pcal_1223 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1239 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Pcal_1595 homocitrate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Pcal_1604 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pcl00630]
D Pcal_0166 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0380 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1562 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1223 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D Pcal_1699 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Pcal_0154 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Pcal_0563 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Pcal_0804 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1219 FAD linked oxidase domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D Pcal_1218 D-lactate dehydrogenase (cytochrome) K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D Pcal_1220 FAD linked oxidase domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D Pcal_1221 protein of unknown function DUF224, cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D Pcal_1715 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Pcal_1166 SPP-like hydrolase K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18]
D Pcal_1612 Serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Pcal_1609 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pcal_0014 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_1233 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Pcal_0396 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Pcal_0395 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Pcal_1496 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Pcal_0394 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
C 00640 Propanoate metabolism [PATH:pcl00640]
D Pcal_0166 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0380 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1562 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1854 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D Pcal_1855 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_0667 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_1769 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2051 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2050 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_0668 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_1770 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_2052 pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_0665 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1767 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1768 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0666 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0510 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pcal_1657 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Pcal_1658 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Pcal_0625 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D Pcal_0624 2,3-dimethylmalate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:pcl00650]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_2127 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pcal_1388 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pcal_2128 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pcal_1389 ferredoxin K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pcal_2129 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Pcal_2130 succinate dehydrogenase subunit D K18860 sdhD; succinate dehydrogenase subunit D
D Pcal_0510 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pcal_1396 Vinylacetyl-CoA Delta-isomerase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D Pcal_0667 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_1769 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2051 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2050 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_0668 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_1770 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_2052 pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_0665 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1767 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1768 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0666 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0561 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0108 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0107 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_0560 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_1082 putative hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D Pcal_1753 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pcal_0451 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pcal_1754 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:pcl00660]
D Pcal_1753 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pcal_0451 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pcal_1754 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Pcal_1657 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Pcal_1658 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Pcal_1593 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Pcal_1603 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Pcal_1605 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pcl00562]
D Pcal_0979 D-fructose 1,6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Pcal_0544 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Pcal_0817 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pcl00190]
D Pcal_1983 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Pcal_2047 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Pcal_1957 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Pcal_2046 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Pcal_1956 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Pcal_2045 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Pcal_2048 NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Pcal_0515 NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Pcal_0516 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Pcal_2049 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Pcal_0520 NADH dehydrogenase (quinone) K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Pcal_0519 NADH dehydrogenase (quinone) K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Pcal_2053 NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Pcal_0518 NADH-ubiquinone oxidoreductase, chain 4L K05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2]
D Pcal_2127 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pcal_1388 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pcal_2128 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pcal_1389 ferredoxin K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pcal_2129 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Pcal_2130 succinate dehydrogenase subunit D K18860 sdhD; succinate dehydrogenase subunit D
D Pcal_1923 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pcal_1946 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pcal_1949 Cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D Pcal_1950 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D Pcal_1944 cytochrome c oxidase, subunit II K02826 qoxA; cytochrome aa3-600 menaquinol oxidase subunit II [EC:7.1.1.5]
D Pcal_1943 Cytochrome-c oxidase K24011 soxM; cytochrome aa3-type oxidase subunit I/III [EC:7.1.1.4]
D Pcal_2089 Sodium-transporting two-sector ATPase K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Pcal_0698 Sodium-transporting two-sector ATPase K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Pcal_2164 H+-transporting ATP synthase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D Pcal_2162 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Pcal_2088 H+-transporting two-sector ATPase, E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Pcal_2087 H+-transporting ATP synthase subunit F (atpF) K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Pcal_0549 V-type ATPase, 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:pcl00710]
D Pcal_0633 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Pcal_0632 glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D Pcal_0893 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pcal_0894 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pcal_0662 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Pcal_0817 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Pcal_1392 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Pcal_0162 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Pcal_1699 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:pcl00720]
D Pcal_0667 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_1769 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2051 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2050 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_0668 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_1770 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_2052 pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_0665 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1767 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1768 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0666 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0313 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Pcal_0162 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Pcal_1392 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Pcal_1699 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Pcal_1060 fumarase alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Pcal_1059 fumarase beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Pcal_2127 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pcal_1388 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pcal_2128 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pcal_1389 ferredoxin K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pcal_2129 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Pcal_2130 succinate dehydrogenase subunit D K18860 sdhD; succinate dehydrogenase subunit D
D Pcal_1658 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Pcal_1657 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Pcal_1387 aldehyde dehydrogenase K15038 K15038; succinyl-CoA reductase [EC:1.2.1.76]
D Pcal_1391 succinate semialdehyde reductase (NADPH) K14465 K14465; succinate semialdehyde reductase (NADPH) [EC:1.1.1.-]
D Pcal_1386 AMP-dependent synthetase and ligase K14467 4hbl; 4-hydroxybutyrate---CoA ligase (AMP-forming) [EC:6.2.1.40]
D Pcal_1396 Vinylacetyl-CoA Delta-isomerase K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D Pcal_0841 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0561 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0108 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pcal_0107 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_0560 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pcal_0579 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Pcal_0804 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Pcal_0882 Alcohol dehydrogenase GroES domain protein K15020 K15020; acryloyl-coenzyme A reductase [EC:1.3.1.84]
D Pcal_1897 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Pcal_0166 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0380 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1562 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:pcl00680]
D Pcal_0396 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Pcal_0395 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Pcal_1496 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Pcal_0394 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Pcal_0014 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Pcal_1612 Serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Pcal_1233 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Pcal_0022 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Pcal_1392 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Pcal_1699 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Pcal_0111 fructose-bisphosphate aldolase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Pcal_0808 3-hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D Pcal_0568 3-hexulose-6-phosphate synthase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43]
D Pcal_0166 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0380 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1562 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0667 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_1769 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2051 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2050 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_0668 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_1770 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_2052 pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_0665 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1767 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1768 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0666 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0313 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Pcal_1668 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Pcal_1741 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Pcal_1016 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:pcl00910]
D Pcal_1907 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Pcal_1906 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Pcal_1908 nitric oxide reductase, NorZ apoprotein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D Pcal_1928 nitrous oxide reductase apoprotein K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D Pcal_1031 glutamate dehydrogenase (NAD) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D Pcal_1609 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pcal_1108 sulfide dehydrogenase (flavoprotein) subunit SudA K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Pcal_0529 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:pcl00920]
D Pcal_1424 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Pcal_1428 dissimilatory adenylylsulfate reductase alpha subunit precursor K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2]
D Pcal_1429 dissimilatory adenylylsulfate reductase beta subunit K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2]
D Pcal_1596 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Pcal_1457 dissimilatory sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Pcal_1446 dissimilatory sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Pcal_1445 dissimilatory sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D Pcal_1456 dissimilatory sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D Pcal_1438 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Pcal_1453 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Pcal_0849 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Pcal_1473 flavoprotein reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Pcal_1323 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Pcal_1409 Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Pcal_0316 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pcl00061]
D Pcal_1312 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0013 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0186 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0511 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0839 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:pcl00071]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0649 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Pcal_0199 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Pcal_0839 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pcal_1311 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Pcal_1581 Alcohol dehydrogenase GroES domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
D Pcal_1233 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
C 00564 Glycerophospholipid metabolism [PATH:pcl00564]
D Pcal_0709 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Pcal_0566 3-dehydroquinate synthase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
D Pcal_0985 geranylgeranylglyceryl phosphate synthase K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41]
D Pcal_0555 UbiA prenyltransferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42]
D Pcal_2086 protein of unknown function DUF46 K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:pcl00592]
D Pcal_0649 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pcl00230]
D Pcal_1336 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Pcal_1127 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Pcal_1884 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pcal_1893 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pcal_1894 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Pcal_1896 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Pcal_1885 phosphoribosylformylglycinamidine synthase subunit II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D Pcal_1886 conserved hypothetical protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D Pcal_1887 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Pcal_1899 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Pcal_1891 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Pcal_1892 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Pcal_1895 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Pcal_0129 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Pcal_2033 Protein of unknown function DUF1297 K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23]
D Pcal_0449 Protein of unknown function DUF1297 K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23]
D Pcal_0353 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pcal_1981 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pcal_0523 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Pcal_1315 protein of unknown function DUF84 K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D Pcal_1696 dITPase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Pcal_0237 NUDIX hydrolase K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17]
D Pcal_2125 NUDIX hydrolase K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17]
D Pcal_1723 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Pcal_1797 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Pcal_0037 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D Pcal_0128 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Pcal_1149 conserved hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D Pcal_1434 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Pcal_1134 conserved hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3]
D Pcal_1760 protein of unknown function DUF265 K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D Pcal_0585 conserved hypothetical protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D Pcal_1987 histidine triad (HIT) protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D Pcal_1424 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Pcal_0529 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:pcl00240]
D Pcal_0114 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Pcal_0113 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Pcal_2154 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Pcal_1776 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D Pcal_0224 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Pcal_1778 dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D Pcal_1777 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Pcal_2155 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Pcal_1804 uridylate kinase, putative K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Pcal_0523 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Pcal_0237 NUDIX hydrolase K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17]
D Pcal_2125 NUDIX hydrolase K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17]
D Pcal_1984 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Pcal_1109 cytidylate kinase, putative K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Pcal_0353 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pcal_1981 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pcal_1837 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D Pcal_0608 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Pcal_0011 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Pcal_1021 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Pcal_1797 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Pcal_0126 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Pcal_0501 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pcl00250]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0970 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Pcal_1537 aspartate-ammonia ligase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Pcal_1612 Serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Pcal_0370 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Pcal_0368 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Pcal_0128 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Pcal_0129 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Pcal_2154 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Pcal_1776 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D Pcal_0510 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pcal_1108 sulfide dehydrogenase (flavoprotein) subunit SudA K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Pcal_1031 glutamate dehydrogenase (NAD) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D Pcal_1609 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pcal_0114 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Pcal_0113 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Pcal_1887 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Pcal_1000 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Pcal_1884 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pcal_1893 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pcl00260]
D Pcal_0377 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Pcal_0378 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Pcal_0379 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Pcal_0376 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Pcal_0375 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Pcal_0014 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Pcal_1612 Serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Pcal_1233 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Pcal_1668 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Pcal_1741 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Pcal_1016 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_1660 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Pcal_1211 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Pcal_2020 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Pcal_1206 tryptophan synthase, beta chain K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pcl00270]
D Pcal_0648 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Pcal_2103 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Pcal_0636 arginine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Pcal_0807 Adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Pcal_0772 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Pcal_0814 purine and other phosphorylase, family 1 K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D Pcal_0435 methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D Pcal_0576 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pcal_1787 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Pcal_0377 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Pcal_0378 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Pcal_0379 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Pcal_0316 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Pcal_1756 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_1409 Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Pcal_1699 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Pcal_1741 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Pcal_0721 hypothetical protein K23370 serK; L-serine kinase (ADP) [EC:2.7.1.226]
C 00280 Valine, leucine and isoleucine degradation [PATH:pcl00280]
D Pcal_1756 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_0199 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Pcal_0649 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Pcal_0699 6-phosphogluconate dehydrogenase, NAD-binding protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Pcal_1131 6-phosphogluconate dehydrogenase, NAD-binding protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1082 putative hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pcl00290]
D Pcal_1660 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Pcal_1593 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Pcal_1603 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Pcal_1605 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Pcal_1753 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pcal_0451 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pcal_1754 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Pcal_1755 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Pcal_0900 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Pcal_1756 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Pcal_1239 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Pcal_1595 homocitrate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Pcal_1604 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pcl00300]
D Pcal_0379 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Pcal_0377 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Pcal_0378 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Pcal_0350 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Pcal_1674 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Pcal_1659 2-aminoadipate aminotransferase apoenzyme K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Pcal_0118 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Pcal_0371 putative lysine biosynthesis protein K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW
D Pcal_1379 L-2-aminoadipate N-acetyltransferase K05827 lysX; [lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase [EC:6.3.2.43]
D Pcal_0372 N-acetylglutamate kinase K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19]
D Pcal_0373 N-acetyl-gamma-glutamyl-phosphate reductase K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106]
D Pcal_0283 N2-acetyl-L-lysine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D Pcal_1259 acetylornithine deacetylase / N2-acetyl-L-lysine deacetylase K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132]
C 00310 Lysine degradation [PATH:pcl00310]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00220 Arginine biosynthesis [PATH:pcl00220]
D Pcal_1594 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Pcal_0370 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Pcal_0368 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Pcal_1887 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Pcal_1609 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pcal_0114 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Pcal_0113 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Pcal_0529 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D Pcal_1031 glutamate dehydrogenase (NAD) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0371 putative lysine biosynthesis protein K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW
D Pcal_0372 N-acetylglutamate kinase K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19]
D Pcal_0373 N-acetyl-gamma-glutamyl-phosphate reductase K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106]
D Pcal_0283 N2-acetyl-L-lysine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D Pcal_1259 acetylornithine deacetylase / N2-acetyl-L-lysine deacetylase K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132]
C 00330 Arginine and proline metabolism [PATH:pcl00330]
D Pcal_1124 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D Pcal_0425 5-oxoprolinase (ATP-hydrolyzing) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D Pcal_0424 5-oxoprolinase (ATP-hydrolyzing) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D Pcal_1626 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D Pcal_0772 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Pcal_0636 arginine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Pcal_0807 Adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Pcal_0881 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0182 D-proline dehydrogenase K17851 dpd; D-proline dehydrogenase [EC:1.5.99.13]
C 00340 Histidine metabolism [PATH:pcl00340]
D Pcal_0134 ATP phosphoribosyltransferase (homohexameric) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Pcal_0135 phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D Pcal_0131 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D Pcal_0140 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Pcal_0130 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Pcal_0137 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Pcal_0139 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Pcal_0089 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_0133 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_0136 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:pcl00350]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0089 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_0133 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_1311 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Pcal_1581 Alcohol dehydrogenase GroES domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:pcl00360]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0089 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_0133 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:pcl00380]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pcl00400]
D Pcal_0891 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Pcal_0895 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Pcal_0911 chorismate mutase / 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D Pcal_0915 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Pcal_0896 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Pcal_0879 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Pcal_1209 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pcal_0912 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pcal_1210 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Pcal_1208 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Pcal_1199 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Pcal_1213 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Pcal_1211 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Pcal_2020 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Pcal_1206 tryptophan synthase, beta chain K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Pcal_0890 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Pcal_0075 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0089 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_0133 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pcl00410]
D Pcal_0510 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pcal_0384 pantothenate synthetase K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
C 00430 Taurine and hypotaurine metabolism [PATH:pcl00430]
D Pcal_1718 gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Pcal_1031 glutamate dehydrogenase (NAD) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pcl00450]
D Pcal_0316 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Pcal_0648 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Pcal_0626 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Pcal_1424 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Pcal_1159 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pcl00460]
D Pcal_0630 glycoside hydrolase, family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Pcal_1718 gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Pcal_0970 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Pcal_0014 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pcl00470]
D Pcal_1887 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Pcal_0182 D-proline dehydrogenase K17851 dpd; D-proline dehydrogenase [EC:1.5.99.13]
C 00480 Glutathione metabolism [PATH:pcl00480]
D Pcal_1718 gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Pcal_0609 peptidase M1, membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Pcal_0579 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Pcal_0772 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
C 00550 Peptidoglycan biosynthesis
C 00552 Teichoic acid biosynthesis [PATH:pcl00552]
D Pcal_1196 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:pcl00543]
D Pcal_0472 glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D Pcal_0484 glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pcl00730]
D Pcal_0240 phosphomethylpyrimidine kinase K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D Pcal_1042 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Pcal_1555 thiazole-adenylate synthase K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D Pcal_0657 Thiamine monophosphate kinase-like protein K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Pcal_1760 protein of unknown function DUF265 K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D Pcal_1149 conserved hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D Pcal_1434 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Pcal_1316 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:pcl00740]
D Pcal_1123 GTP cyclohydrolase IIa K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29]
D Pcal_1122 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302]
D Pcal_1121 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D Pcal_1757 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Pcal_1013 riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Pcal_1071 CTP-dependent riboflavin kinase K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161]
D Pcal_2107 FMN adenylyltransferase K14656 ribL; FAD synthetase [EC:2.7.7.2]
D Pcal_1336 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Pcal_0810 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:pcl00750]
D Pcal_0375 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Pcal_0210 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D Pcal_0209 pyridoxal phosphate synthase yaaE subunit K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pcl00760]
D Pcal_1118 Quinolinate phosphoribosyl transferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Pcal_0353 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pcal_1981 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pcal_1625 cytidyltransferase-related domain protein K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1]
D Pcal_0794 cytidyltransferase-related domain protein K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1]
D Pcal_0793 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D Pcal_1963 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Pcal_1145 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Pcal_2058 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:pcl00770]
D Pcal_1753 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pcal_0451 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pcal_1754 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Pcal_1755 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Pcal_0900 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Pcal_1504 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Pcal_0383 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D Pcal_0382 pantothenate kinase K06982 pok; pantoate kinase [EC:2.7.1.169]
D Pcal_0384 pantothenate synthetase K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
D Pcal_0771 Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Pcal_0071 cytidyltransferase-related domain protein K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Pcal_1764 Protein of unknown function DUF359 K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237]
D Pcal_1756 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:pcl00780]
D Pcal_1312 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0013 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0186 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0511 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00785 Lipoic acid metabolism [PATH:pcl00785]
D Pcal_1401 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Pcal_1406 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_1405 Pyruvate dehydrogenase (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Pcal_1404 Transketolase, central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Pcal_1403 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00790 Folate biosynthesis [PATH:pcl00790]
D Pcal_0512 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Pcal_1162 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Pcal_1412 transcriptional coactivator/pterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Pcal_0642 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Pcal_0202 ExsB family protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Pcal_1670 protein of unknown function DUF115 K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Pcal_0024 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Pcal_0015 molybdenum cofactor biosynthesis protein (moaC) K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Pcal_2136 molybdopterin synthase subunit MoaE / molybdopterin synthase subunit MoaD K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12]
D Pcal_0122 molybdenum cofactor synthesis domain protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Pcal_1189 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Pcal_1190 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Pcal_0983 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Pcal_0886 molybdenum cofactor cytidylyltransferase K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D Pcal_1615 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:pcl00670]
D Pcal_1897 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Pcal_0014 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Pcal_1896 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Pcal_0501 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D Pcal_1302 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pcl00860]
D Pcal_1137 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pcal_1481 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Pcal_2034 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Pcal_1717 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Pcal_1709 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Pcal_1707 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Pcal_1712 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Pcal_1461 uroporphyrinogen-III synthase (HemD) K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Pcal_1458 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Pcal_1713 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Pcal_1440 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Pcal_1710 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Pcal_1706 Radical SAM domain protein K22226 ahbC; Fe-coproporphyrin III synthase
D Pcal_1716 Radical SAM domain protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D Pcal_1923 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pcal_1946 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pcal_1522 cobalt-factor II C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D Pcal_1525 precorrin-3 methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D Pcal_1521 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D Pcal_1529 cobalamin (vitamin B12) biosynthesis CbiG protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D Pcal_1524 cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D Pcal_1523 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D Pcal_1528 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D Pcal_1526 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D Pcal_1441 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Pcal_1540 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Pcal_1539 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Pcal_1545 paREP1 K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62]
D Pcal_1535 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Pcal_0389 Ferritin, Dps family protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pcl00130]
D Pcal_1703 4-hydroxybenzoate polyprenyltransferase, putative K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Pcal_0497 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D Pcal_0810 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Pcal_1677 Methyltransferase type 11 K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Pcal_0738 Radical SAM domain protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D Pcal_0740 Radical SAM domain protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D Pcal_0830 protein of unknown function DUF191 K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pcl00900]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1082 putative hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D Pcal_1085 3-hydroxy-3-methylglutaryl-coenzyme A reductase K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
D Pcal_1835 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D Pcal_0149 isopentenyl phosphate kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26]
D Pcal_0949 predicted aconitase subunit 1 K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182]
D Pcal_0950 predicted aconitase subunit 2 K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182]
D Pcal_0948 UbiD family decarboxylase K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126]
D Pcal_0810 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Pcal_0017 isopentenyl-diphosphate delta-isomerase, type 2 K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Pcal_0150 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Pcal_1157 Undecaprenyl pyrophosphate synthetase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:pcl00907]
D Pcal_0649 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Pcal_0893 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pcal_0894 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D Pcal_1001 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:pcl00946]
D Pcal_0630 glycoside hydrolase, family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D Pcal_1846 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:pcl00261]
D Pcal_1424 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Pcal_0377 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Pcal_0378 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Pcal_0350 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pcl00521]
D Pcal_1032 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Pcal_0544 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Pcal_0979 D-fructose 1,6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Pcal_1001 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Pcal_1032 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
D Pcal_1001 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00401 Novobiocin biosynthesis [PATH:pcl00401]
D Pcal_0890 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0089 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_0133 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Pcal_1209 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pcal_0912 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pcal_1210 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Pcal_1312 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0013 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0186 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0511 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites [PATH:pcl00999]
D Pcal_2103 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Pcal_0630 glycoside hydrolase, family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:pcl00362]
D Pcal_0649 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:pcl00627]
D Pcal_0787 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Pcal_0810 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:pcl00625]
D Pcal_1311 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Pcal_1581 Alcohol dehydrogenase GroES domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:pcl00633]
D Pcal_1578 nickel-dependent hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Pcal_1575 Nickel-iron dehydrogenase small subunit, N-terminal domain protein K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Pcal_0667 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_1769 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2051 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pcal_2050 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_0668 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_1770 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pcal_2052 pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_0665 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1767 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pcal_1768 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_0666 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pcal_1457 dissimilatory sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Pcal_1446 dissimilatory sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D Pcal_1445 dissimilatory sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D Pcal_1456 dissimilatory sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
C 00642 Ethylbenzene degradation
D Pcal_0649 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:pcl00626]
D Pcal_1311 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Pcal_1581 Alcohol dehydrogenase GroES domain protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pcl03020]
D Pcal_2091 DNA-directed RNA polymerase, subunit B' / DNA-directed RNA polymerase, subunit B' K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6]
D Pcal_2092 DNA-directed RNA polymerase, subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D Pcal_2093 DNA-directed RNA polymerase, subunit A' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D Pcal_2097 DNA-directed RNA polymerase, subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D Pcal_1589 DNA-directed RNA polymerase, subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D Pcal_1990 DNA-directed RNA polymerase, subunit E' K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D Pcal_0432 DNA-directed RNA polymerase, subunit F K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D Pcal_2090 RNA polymerase subunit, RPB5 K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D Pcal_1772 DNA-directed RNA polymerase, subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D Pcal_2101 DNA-directed RNA polymerase, subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
D Pcal_1624 DNA-directed RNA polymerase, subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
C 03022 Basal transcription factors [PATH:pcl03022]
D Pcal_0584 Transcription initiation factor IIB (TFIIB) K03124 TFIIB; transcription initiation factor TFIIB
D Pcal_1734 Transcription initiation factor IIB (TFIIB) K03124 TFIIB; transcription initiation factor TFIIB
D Pcal_0430 Zinc finger, TFIIB-type domain protein K03124 TFIIB; transcription initiation factor TFIIB
D Pcal_1078 TATA binding protein of transcription factor TFIID K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D Pcal_2147 Transcription factor IIE (TFIIE), alpha subunit K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D Pcal_1117 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pcl03010]
D Pcal_0027 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Pcal_0553 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Pcal_0971 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Pcal_0779 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Pcal_0006 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Pcal_0176 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Pcal_2100 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Pcal_0354 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Pcal_1813 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Pcal_2096 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Pcal_0972 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Pcal_0177 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Pcal_1173 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Pcal_0628 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Pcal_0627 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Pcal_1182 SSU ribosomal protein S3AE K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D Pcal_1747 SSU ribosomal protein S4E K02987 RP-S4e; small subunit ribosomal protein S4e
D Pcal_0821 SSU ribosomal protein S6E K02991 RP-S6e; small subunit ribosomal protein S6e
D Pcal_1732 SSU ribosomal protein S8E K02995 RP-S8e; small subunit ribosomal protein S8e
D Pcal_0019 SSU ribosomal protein S17E K02962 RP-S17e; small subunit ribosomal protein S17e
D Pcal_0988 SSU ribosomal protein S19E K02966 RP-S19e; small subunit ribosomal protein S19e
D Pcal_0306 SSU ribosomal protein S24E K02974 RP-S24e; small subunit ribosomal protein S24e
D Pcal_1079 SSU ribosomal protein S25E K02975 RP-S25e; small subunit ribosomal protein S25e
D Pcal_1091 SSU ribosomal protein S26E K02976 RP-S26e; small subunit ribosomal protein S26e
D Pcal_0994 SSU ribosomal protein S27E K02978 RP-S27e; small subunit ribosomal protein S27e
D Pcal_0307 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D Pcal_0294 SSU ribosomal protein S30E K02983 RP-S30e; small subunit ribosomal protein S30e
D Pcal_1833 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Pcal_0018 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Pcal_1583 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Pcal_2000 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Pcal_1705 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Pcal_1834 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Pcal_1832 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Pcal_0621 LSU ribosomal protein L12AE K02869 RP-L12; large subunit ribosomal protein L12
D Pcal_2099 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Pcal_1784 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Pcal_1033 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Pcal_0173 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Pcal_0556 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Pcal_1585 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Pcal_1748 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Pcal_0552 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Pcal_0778 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Pcal_1584 LSU ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e
D Pcal_0443 LSU ribosomal protein L7AE K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D Pcal_1995 LSU ribosomal protein L10AE K02866 RP-L10e; large subunit ribosomal protein L10e
D Pcal_0588 LSU ribosomal protein L13E K02873 RP-L13e; large subunit ribosomal protein L13e
D Pcal_0053 LSU ribosomal protein L14E K02875 RP-L14e; large subunit ribosomal protein L14e
D Pcal_1666 LSU ribosomal protein L15E K02877 RP-L15e; large subunit ribosomal protein L15e
D Pcal_2098 LSU ribosomal protein L18AE K02883 RP-L18e; large subunit ribosomal protein L18e
D Pcal_0174 LSU ribosomal protein L19E K02885 RP-L19e; large subunit ribosomal protein L19e
D Pcal_1729 LSU ribosomal protein L21E K02889 RP-L21e; large subunit ribosomal protein L21e
D Pcal_0442 LSU ribosomal protein L24E K02896 RP-L24e; large subunit ribosomal protein L24e
D Pcal_2094 LSU ribosomal protein L30E K02908 RP-L30e; large subunit ribosomal protein L30e
D Pcal_1825 LSU ribosomal protein L31E K02910 RP-L31e; large subunit ribosomal protein L31e
D Pcal_0175 LSU ribosomal protein L32E K02912 RP-L32e; large subunit ribosomal protein L32e
D Pcal_1110 LSU ribosomal protein L34E K02915 RP-L34e; large subunit ribosomal protein L34e
D Pcal_2140 LSU ribosomal protein L37E K02922 RP-L37e; large subunit ribosomal protein L37e
D Pcal_0919 LSU ribosomal protein L37AE K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D Pcal_0622 LSU ribosomal protein L38E K02923 RP-L38e; large subunit ribosomal protein L38e
D Pcal_0986 LSU ribosomal protein L39E K02924 RP-L39e; large subunit ribosomal protein L39e
D Pcal_1849 LSU ribosomal protein L40E K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D Pcal_0993 LSU ribosomal protein L44E K02929 RP-L44e; large subunit ribosomal protein L44e
D Pcal_1827 LSU ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX
D Pcal_R0022 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Pcal_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Pcal_R0026 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pcl00970]
D Pcal_R0004 pseudogene K14218 tRNA-Ala; tRNA Ala
D Pcal_R0012 pseudogene K14218 tRNA-Ala; tRNA Ala
D Pcal_R0018 pseudogene K14218 tRNA-Ala; tRNA Ala
D Pcal_R0020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Pcal_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0006 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0005 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0019 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0024 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Pcal_R0008 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pcal_R0014 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pcal_R0007 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pcal_R0027 pseudogene K14233 tRNA-Ser; tRNA Ser
D Pcal_R0017 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Pcal_R0010 pseudogene K14237 tRNA-Val; tRNA Val
D Pcal_R0009 pseudogene K14237 tRNA-Val; tRNA Val
D Pcal_R0013 pseudogene K14237 tRNA-Val; tRNA Val
D Pcal_1137 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pcal_0872 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Pcal_0144 glutamyl-tRNA(Gln) amidotransferase subunit D K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7]
D Pcal_1105 glutamyl-tRNA(Gln) amidotransferase subunit E K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7]
D Pcal_1993 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Pcal_2119 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Pcal_1611 aspartate-ammonia ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Pcal_1133 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Pcal_1628 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Pcal_0635 aminoacyl-transfer RNA synthetase, class II K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Pcal_1802 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Pcal_0031 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Pcal_1159 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Pcal_1649 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Pcal_0691 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Pcal_0601 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Pcal_0499 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Pcal_0441 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Pcal_1092 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Pcal_0528 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Pcal_0795 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Pcal_0573 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Pcal_0892 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pcal_2062 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pcal_1822 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pcl03060]
D Pcal_1034 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Pcal_1726 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Pcal_R0015 signal recognition particle RNA K01983 ffs; SRP RNA
D Pcal_1829 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Pcal_1731 signal recognition particle, subunit SRP19 (srp19) K03105 SRP19; signal recognition particle subunit SRP19
D Pcal_0863 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pcal_0862 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pcal_0534 Sec-independent protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA
D Pcal_0533 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D Pcal_0232 peptidase S26B, signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pcl04122]
D Pcal_1409 Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Pcal_1647 PP-loop domain protein K14168 CTU1; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-]
D Pcal_0387 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Pcal_1451 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Pcal_1475 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Pcal_0024 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Pcal_1062 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein
D Pcal_0157 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein
D Pcal_1019 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein
D Pcal_2136 molybdopterin synthase subunit MoaE / molybdopterin synthase subunit MoaD K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12]
D Pcal_0677 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D Pcal_0015 molybdenum cofactor biosynthesis protein (moaC) K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Pcal_0122 molybdenum cofactor synthesis domain protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Pcal_1042 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Pcal_1011 conserved hypothetical protein K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]
C 03050 Proteasome [PATH:pcl03050]
D Pcal_0936 transcriptional regulator, Fis family K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Pcal_2008 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pcal_0021 proteasome endopeptidase complex, beta component, Threonine peptidase, MEROPS family T01A K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:pcl03018]
D Pcal_1587 conserved protein (RNA polymerase related) K07573 CSL4; exosome complex component CSL4
D Pcal_0934 ribosomal RNA-processing protein RRP4 K03679 RRP4; exosome complex component RRP4
D Pcal_0932 ribosomal RNA-processing protein RRP42 K12589 RRP42; exosome complex component RRP42
D Pcal_0933 ribosomal RNA-processing protein RRP41/SKI6 K11600 RRP41; exosome complex component RRP41
D Pcal_0022 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pcl03030]
D Pcal_1050 TOPRIM domain protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D Pcal_0780 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Pcal_1049 replicative DNA polymerase I K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pcal_1087 replicative DNA polymerase I K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pcal_0696 DNA polymerase B region K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pcal_0084 replicative DNA helicase Mcm K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D Pcal_0991 DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D Pcal_0952 DNA primase large subunit K18882 priL; DNA primase large subunit
D Pcal_0990 monomeric archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2131 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
D Pcal_0005 Replication factor C K04801 rfcS; replication factor C small subunit
D Pcal_0583 replication factor C small subunit K04801 rfcS; replication factor C small subunit
D Pcal_0004 transcriptional regulator, Fis family K04800 rfcL; replication factor C large subunit
D Pcal_2117 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pcal_0039 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03410 Base excision repair [PATH:pcl03410]
D Pcal_1250 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D Pcal_0066 HhH-GPD family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Pcal_0990 monomeric archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2131 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2117 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pcal_0039 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Pcal_2076 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Pcal_1781 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
C 03420 Nucleotide excision repair [PATH:pcl03420]
D Pcal_1117 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Pcal_0629 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pcal_0990 monomeric archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2131 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
D Pcal_0039 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03430 Mismatch repair [PATH:pcl03430]
D Pcal_0990 monomeric archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2131 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
D Pcal_0039 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03440 Homologous recombination
C 03450 Non-homologous end-joining
D Pcal_2117 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
D Pcal_1991 DNA-directed RNA polymerase subunit E, RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4
D Pcal_1831 LSU ribosomal protein L24A K15172 SUPT5H; transcription elongation factor SPT5
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pcl02010]
D Pcal_1399 conserved hypothetical protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D Pcal_1398 tungstate/molybdate transport system permease protein K15496 wtpB; molybdate/tungstate transport system permease protein
D Pcal_1397 carbohydrate ABC transporter ATP-binding protein, CUT1 family K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6]
D Pcal_0248 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D Pcal_0244 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D Pcal_0243 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Pcal_0214 ABC transporter, periplasmic binding protein, thiB subfamily K02064 thiB; thiamine transport system substrate-binding protein
D Pcal_0215 putative thiamine transport system permease protein K02063 thiP; thiamine transport system permease protein
D Pcal_0216 carbohydrate ABC transporter ATP-binding protein, CUT1 family K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D Pcal_0120 extracellular solute-binding protein, family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Pcal_0364 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein
D Pcal_0365 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein
D Pcal_0366 ABC transporter related protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Pcal_1358 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Pcal_1617 maltooligosaccharide-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Pcal_1618 maltooligosaccharide ABC transporter membrane protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Pcal_1619 maltooligosaccharide ABC transporter membrane protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Pcal_1844 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins
D Pcal_1044 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins
D Pcal_1842 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D Pcal_1046 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D Pcal_1841 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Pcal_1047 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Pcal_1045 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Pcal_1843 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Pcal_2112 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10196 glcS; glucose/arabinose transport system substrate-binding protein
D Pcal_2111 carbohydrate ABC transporter membrane protein 1, CUT1 family K10197 glcT; glucose/arabinose transport system permease protein
D Pcal_2110 carbohydrate ABC transporter membrane protein 2, CUT1 family K10198 glcU; glucose/arabinose transport system permease protein
D Pcal_1882 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Pcal_1881 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein
D Pcal_1880 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein
D Pcal_1879 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Pcal_0848 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_1775 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0446 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0825 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0847 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0826 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0445 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0444 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0827 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0846 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0447 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0824 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0845 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0823 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_0844 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_1774 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_1559 cobalamin biosynthesis protein K02009 cbiN; cobalt/nickel transport protein
D Pcal_1558 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Pcal_1486 cytochrome c assembly protein K02195 ccmC; heme exporter protein C
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:pcl03070]
D Pcal_1034 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Pcal_1829 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Pcal_1726 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Pcal_0534 Sec-independent protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA
D Pcal_0533 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pcl02020]
D Pcal_1882 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Pcal_0564 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Pcal_1907 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Pcal_1906 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Pcal_1909 respiratory nitrate reductase chaperone NarJ K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D Pcal_1609 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1575 Nickel-iron dehydrogenase small subunit, N-terminal domain protein K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Pcal_1578 nickel-dependent hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pcl02024]
D Pcal_1209 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pcal_0912 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pcal_1210 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Pcal_0848 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_1775 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0446 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0825 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0847 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0826 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0445 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0444 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0827 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0846 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0447 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0824 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0845 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0823 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_0844 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_1774 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_0839 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pcal_1231 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pcal_0422 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pcal_0975 oligopeptide binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pcal_1230 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pcal_0420 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pcal_0974 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pcal_1229 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pcal_0421 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pcal_0973 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pcal_1228 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Pcal_1744 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Pcal_1227 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Pcal_1745 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Pcal_1034 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Pcal_1829 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Pcal_1726 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Pcal_0022 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
C 01502 Vancomycin resistance
C 01503 Cationic antimicrobial peptide (CAMP) resistance
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pcl01000]
C 01001 Protein kinases [BR:pcl01001]
D Pcal_0924 Mn2+-dependent serine/threonine protein kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D Pcal_1180 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Pcal_2105 protein of unknown function RIO1 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
D Pcal_0025 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
C 01009 Protein phosphatases and associated proteins [BR:pcl01009]
D Pcal_0835 translation initiation factor 2 subunit beta (aeIF-2b) K03238 EIF2S2; translation initiation factor 2 subunit 2
D Pcal_1787 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Pcal_1016 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:pcl01002]
D Pcal_0607 peptidase A24A, prepilin type IV K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D Pcal_1579 Hydrogenase 1 maturation peptidase HyaD, Aspartic peptidase, MEROPS family A31 K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Pcal_1572 hypothetical protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Pcal_1723 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Pcal_1884 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pcal_1893 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pcal_1000 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Pcal_1537 aspartate-ammonia ligase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Pcal_0060 Abortive infection protein K07052 K07052; CAAX protease family protein
D Pcal_0124 Abortive infection protein K07052 K07052; CAAX protease family protein
D Pcal_0048 Abortive infection protein K07052 K07052; CAAX protease family protein
D Pcal_0302 Abortive infection protein K07052 K07052; CAAX protease family protein
D Pcal_0609 peptidase M1, membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Pcal_0645 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Pcal_1674 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Pcal_1051 methionine aminopeptidase, type II K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Pcal_0069 carboxypeptidase Pfu, Metallo peptidase, MEROPS family M32 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D Pcal_1192 Heat shock protein, Metallo peptidase, MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Pcal_1976 peptidase M48, Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Pcal_1602 peptidase, zinc-dependent K06974 amzA; archaemetzincin [EC:3.4.-.-]
D Pcal_0232 peptidase S26B, signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D Pcal_1846 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D Pcal_0686 Rhomboid family protein K07059 K07059; rhomboid family protein
D Pcal_0936 transcriptional regulator, Fis family K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Pcal_2008 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pcal_0021 proteasome endopeptidase complex, beta component, Threonine peptidase, MEROPS family T01A K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pcal_0970 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Pcal_1718 gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Pcal_1901 peptidase U62, modulator of DNA gyrase K03592 pmbA; PmbA protein
D Pcal_1902 peptidase U62, modulator of DNA gyrase K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:pcl01003]
D Pcal_1170 glycosyl transferase, family 4 K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15]
D Pcal_0997 Oligosaccharyl transferase, STT3 subunit K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18]
D Pcal_0526 Dolichyl-phosphate beta-D-mannosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Pcal_0481 glycosyl transferase, family 2 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Pcal_1038 glycogen synthase (ADP-glucose/UDP-glucose) K00703 glgA; starch synthase [EC:2.4.1.21]
D Pcal_0472 glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D Pcal_0484 glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D Pcal_1363 trehalose 6-phosphate synthase / trehalose 6-phosphatase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pcl01005]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pcl01011]
D Pcal_1196 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 01004 Lipid biosynthesis proteins [BR:pcl01004]
D Pcal_1312 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0013 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0186 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0511 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pcal_0166 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_0380 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1562 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pcal_1854 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D Pcal_1855 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D Pcal_0839 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pcl01006]
D Pcal_0150 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Pcal_1703 4-hydroxybenzoate polyprenyltransferase, putative K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Pcal_1923 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pcal_1946 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:pcl01007]
D Pcal_1137 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pcal_0892 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pcal_2062 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pcal_1822 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Pcal_0031 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Pcal_0441 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Pcal_1159 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Pcal_0601 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Pcal_1649 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Pcal_0691 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Pcal_0499 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Pcal_1611 aspartate-ammonia ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Pcal_1133 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Pcal_2119 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Pcal_0528 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Pcal_1628 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Pcal_1802 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Pcal_1092 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Pcal_0635 aminoacyl-transfer RNA synthetase, class II K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Pcal_1993 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Pcal_0795 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Pcal_0573 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Pcal_0962 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0914 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pcal_0089 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_0133 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pcal_0283 N2-acetyl-L-lysine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D Pcal_0510 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pcal_1717 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Pcal_1756 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Pcal_1612 Serine--glyoxylate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Pcal_0404 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pcl03000]
D Pcal_0576 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pcal_1078 TATA binding protein of transcription factor TFIID K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D Pcal_0003 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Pcal_0941 conserved hypothetical protein K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator
D Pcal_0543 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D Pcal_1198 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Pcal_1638 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D Pcal_0023 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D Pcal_0266 CRISPR-associated HTH regulatory protein, Csa3 family K07725 csa3; CRISPR-associated protein Csa3
D Pcal_1273 transcriptional regulator, TrmB K07725 csa3; CRISPR-associated protein Csa3
D Pcal_0596 helix-turn-helix domain protein K07728 K07728; putative transcriptional regulator
D Pcal_0589 helix-turn-helix domain protein K07731 K07731; putative transcriptional regulator
D Pcal_1012 transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D Pcal_1563 transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D Pcal_0767 Chromosome segregation ATPase-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Pcal_1316 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 03021 Transcription machinery [BR:pcl03021]
D Pcal_0584 Transcription initiation factor IIB (TFIIB) K03124 TFIIB; transcription initiation factor TFIIB
D Pcal_1734 Transcription initiation factor IIB (TFIIB) K03124 TFIIB; transcription initiation factor TFIIB
D Pcal_0430 Zinc finger, TFIIB-type domain protein K03124 TFIIB; transcription initiation factor TFIIB
D Pcal_1078 TATA binding protein of transcription factor TFIID K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D Pcal_2147 Transcription factor IIE (TFIIE), alpha subunit K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D Pcal_1117 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Pcal_1991 DNA-directed RNA polymerase subunit E, RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4
D Pcal_1831 LSU ribosomal protein L24A K15172 SUPT5H; transcription elongation factor SPT5
D Pcal_1730 protein of unknown function, ATP binding protein K24104 GPN; GPN-loop GTPase
D Pcal_2095 NusA family KH domain protein K02600 nusA; transcription termination/antitermination protein NusA
D Pcal_2092 DNA-directed RNA polymerase, subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D Pcal_2093 DNA-directed RNA polymerase, subunit A' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D Pcal_2091 DNA-directed RNA polymerase, subunit B' / DNA-directed RNA polymerase, subunit B' K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6]
D Pcal_2097 DNA-directed RNA polymerase, subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D Pcal_1990 DNA-directed RNA polymerase, subunit E' K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D Pcal_0432 DNA-directed RNA polymerase, subunit F K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D Pcal_2090 RNA polymerase subunit, RPB5 K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D Pcal_1772 DNA-directed RNA polymerase, subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D Pcal_1589 DNA-directed RNA polymerase, subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D Pcal_2101 DNA-directed RNA polymerase, subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
D Pcal_1624 DNA-directed RNA polymerase, subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
D Pcal_1177 DNA-directed RNA polymerase, subunit M K03057 tfs; transcription factor S
D Pcal_0989 DNA-directed RNA polymerase, subunit M K03057 tfs; transcription factor S
C 03019 Messenger RNA biogenesis [BR:pcl03019]
D Pcal_1991 DNA-directed RNA polymerase subunit E, RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4
D Pcal_1831 LSU ribosomal protein L24A K15172 SUPT5H; transcription elongation factor SPT5
D Pcal_1809 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pcal_2115 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pcal_1763 cell division protein pelota K06965 PELO; protein pelota
D Pcal_0355 peptide chain release factor subunit 1 (aeRF-1) K03265 ETF1; peptide chain release factor subunit 1
D Pcal_1111 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pcal_0547 translation elongation factor 1A GTP binding domain family K03231 EEF1A; elongation factor 1-alpha
D Pcal_1587 conserved protein (RNA polymerase related) K07573 CSL4; exosome complex component CSL4
D Pcal_0934 ribosomal RNA-processing protein RRP4 K03679 RRP4; exosome complex component RRP4
D Pcal_0933 ribosomal RNA-processing protein RRP41/SKI6 K11600 RRP41; exosome complex component RRP41
D Pcal_0932 ribosomal RNA-processing protein RRP42 K12589 RRP42; exosome complex component RRP42
D Pcal_0022 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 03041 Spliceosome [BR:pcl03041]
D Pcal_0146 ZPR1-like zinc finger protein K06874 ZPR1; zinc finger protein ZPR1
C 03011 Ribosome [BR:pcl03011]
D Pcal_1182 SSU ribosomal protein S3AE K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D Pcal_1747 SSU ribosomal protein S4E K02987 RP-S4e; small subunit ribosomal protein S4e
D Pcal_0821 SSU ribosomal protein S6E K02991 RP-S6e; small subunit ribosomal protein S6e
D Pcal_1732 SSU ribosomal protein S8E K02995 RP-S8e; small subunit ribosomal protein S8e
D Pcal_0019 SSU ribosomal protein S17E K02962 RP-S17e; small subunit ribosomal protein S17e
D Pcal_0988 SSU ribosomal protein S19E K02966 RP-S19e; small subunit ribosomal protein S19e
D Pcal_0306 SSU ribosomal protein S24E K02974 RP-S24e; small subunit ribosomal protein S24e
D Pcal_1079 SSU ribosomal protein S25E K02975 RP-S25e; small subunit ribosomal protein S25e
D Pcal_1091 SSU ribosomal protein S26E K02976 RP-S26e; small subunit ribosomal protein S26e
D Pcal_0994 SSU ribosomal protein S27E K02978 RP-S27e; small subunit ribosomal protein S27e
D Pcal_0307 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D Pcal_0294 SSU ribosomal protein S30E K02983 RP-S30e; small subunit ribosomal protein S30e
D Pcal_1584 LSU ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e
D Pcal_0443 LSU ribosomal protein L7AE K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D Pcal_1995 LSU ribosomal protein L10AE K02866 RP-L10e; large subunit ribosomal protein L10e
D Pcal_0588 LSU ribosomal protein L13E K02873 RP-L13e; large subunit ribosomal protein L13e
D Pcal_0053 LSU ribosomal protein L14E K02875 RP-L14e; large subunit ribosomal protein L14e
D Pcal_1666 LSU ribosomal protein L15E K02877 RP-L15e; large subunit ribosomal protein L15e
D Pcal_2098 LSU ribosomal protein L18AE K02883 RP-L18e; large subunit ribosomal protein L18e
D Pcal_0174 LSU ribosomal protein L19E K02885 RP-L19e; large subunit ribosomal protein L19e
D Pcal_1729 LSU ribosomal protein L21E K02889 RP-L21e; large subunit ribosomal protein L21e
D Pcal_0442 LSU ribosomal protein L24E K02896 RP-L24e; large subunit ribosomal protein L24e
D Pcal_2094 LSU ribosomal protein L30E K02908 RP-L30e; large subunit ribosomal protein L30e
D Pcal_1825 LSU ribosomal protein L31E K02910 RP-L31e; large subunit ribosomal protein L31e
D Pcal_0175 LSU ribosomal protein L32E K02912 RP-L32e; large subunit ribosomal protein L32e
D Pcal_1110 LSU ribosomal protein L34E K02915 RP-L34e; large subunit ribosomal protein L34e
D Pcal_2140 LSU ribosomal protein L37E K02922 RP-L37e; large subunit ribosomal protein L37e
D Pcal_0919 LSU ribosomal protein L37AE K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D Pcal_0622 LSU ribosomal protein L38E K02923 RP-L38e; large subunit ribosomal protein L38e
D Pcal_0986 LSU ribosomal protein L39E K02924 RP-L39e; large subunit ribosomal protein L39e
D Pcal_1849 LSU ribosomal protein L40E K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D Pcal_0993 LSU ribosomal protein L44E K02929 RP-L44e; large subunit ribosomal protein L44e
D Pcal_0027 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Pcal_0553 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Pcal_0971 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Pcal_0779 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Pcal_0006 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Pcal_0176 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Pcal_2100 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Pcal_0354 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Pcal_1813 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Pcal_2096 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Pcal_0972 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Pcal_0177 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Pcal_1173 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Pcal_0628 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Pcal_0627 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Pcal_1833 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Pcal_0018 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Pcal_1583 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Pcal_2000 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Pcal_1705 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Pcal_1834 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Pcal_1832 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Pcal_2099 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Pcal_1784 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Pcal_1033 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Pcal_0173 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Pcal_0556 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Pcal_1585 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Pcal_1748 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Pcal_0552 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Pcal_0778 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Pcal_0621 LSU ribosomal protein L12AE K02869 RP-L12; large subunit ribosomal protein L12
D Pcal_1827 LSU ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX
D Pcal_R0026 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Pcal_R0022 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Pcal_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pcl03009]
D Pcal_1106 rRNA biogenesis protein Nop56/Nop58 K14564 NOP56; nucleolar protein 56
D Pcal_0996 Nucleolar RNA-binding protein Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D Pcal_0920 ribosomal biogenesis protein, containing Brix domain K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D Pcal_1590 Suppressor Mra1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D Pcal_1181 KH, type 1, domain protein K06961 KRR1; ribosomal RNA assembly protein
D Pcal_1180 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Pcal_2105 protein of unknown function RIO1 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
D Pcal_1134 conserved hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3]
D Pcal_1686 ABC transporter related protein K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
D Pcal_2010 small GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein
D Pcal_0047 conserved hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
D Pcal_0955 conserved hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
D Pcal_1826 translation initiation factor 6 (aeIF-6) K03264 EIF6; translation initiation factor 6
D Pcal_0577 NMD3 K07562 NMD3; 60S ribosomal export protein NMD3
D Pcal_0935 Shwachman-Bodian-Diamond syndrome protein K14574 SDO1; ribosome maturation protein SDO1
D Pcal_1809 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pcal_2115 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pcal_1107 rRNA 2'-O-methyltransferase fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein
D Pcal_0443 LSU ribosomal protein L7AE K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D Pcal_1733 snoRNP protein GAR1 K07569 gar1; RNA-binding protein
D Pcal_2095 NusA family KH domain protein K02600 nusA; transcription termination/antitermination protein NusA
D Pcal_1104 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Pcal_2001 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Pcal_2153 [SSU ribosomal protein S18P]-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Pcal_0958 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Pcal_2074 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D Pcal_2146 GTP-binding protein HflX K03665 hflX; GTPase
D Pcal_1129 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Pcal_1806 GTP-binding conserved hypothetical protein TIGR00650 K06942 ychF; ribosome-binding ATPase
D Pcal_2040 RNA-binding protein AU-1 K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-]
C 03016 Transfer RNA biogenesis [BR:pcl03016]
D Pcal_1103 RNAse Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Pcal_1765 beta-lactamase domain protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Pcal_0141 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D Pcal_0569 archease family protein K24956 ZBTB8OS; protein archease
D Pcal_1111 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pcal_0547 translation elongation factor 1A GTP binding domain family K03231 EEF1A; elongation factor 1-alpha
D Pcal_1137 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pcal_1092 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Pcal_0601 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Pcal_0691 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Pcal_1159 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Pcal_0441 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Pcal_0499 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Pcal_1993 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Pcal_1611 aspartate-ammonia ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Pcal_1133 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Pcal_1628 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Pcal_0635 aminoacyl-transfer RNA synthetase, class II K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Pcal_1802 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Pcal_0031 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Pcal_1649 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Pcal_0528 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Pcal_0795 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Pcal_0573 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Pcal_0892 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pcal_2062 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pcal_1822 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Pcal_1672 conserved hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Pcal_1661 Ala-tRNA(Pro) hydrolase K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
D Pcal_1805 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Pcal_1160 RNA modification enzyme, MiaB family K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
D Pcal_0595 N(2),N(2)-dimethylguanosine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D Pcal_2080 methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Pcal_0923 beta-aspartate methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D Pcal_0086 Methyltransferase type 11 K15444 TRM9; tRNA (uracil-5-)-methyltransferase TRM9 [EC:2.1.1.229]
D Pcal_0866 Wyosine base formation K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D Pcal_0351 Protein of unknown function DUF207 K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D Pcal_0700 Pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Pcal_0054 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Pcal_1782 Pseudouridylate synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D Pcal_1724 conserved hypothetical protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
D Pcal_1647 PP-loop domain protein K14168 CTU1; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-]
D Pcal_0924 Mn2+-dependent serine/threonine protein kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D Pcal_0308 putative metalloendopeptidase, glycoprotease family K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D Pcal_0088 Radical SAM domain protein K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D Pcal_1129 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Pcal_1812 THUMP domain protein K06963 TAN1; tRNA acetyltransferase TAN1
D Pcal_1164 THUMP domain protein K06963 TAN1; tRNA acetyltransferase TAN1
D Pcal_1737 tRNA adenylyltransferase K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
D Pcal_1630 tRNA intron endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
D Pcal_2142 conserved hypothetical protein K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
D Pcal_1736 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Pcal_1549 phosphotransferase KptA/Tpt1 K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D Pcal_2119 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Pcal_1090 protein of unknown function DUF358 K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D Pcal_1725 hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D Pcal_0647 tRNA (guanine-N1-)-methyltransferase K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221]
D Pcal_1100 putative RNA methylase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256]
D Pcal_0592 putative RNA methylase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D Pcal_2018 PP-loop domain protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D Pcal_0387 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Pcal_1451 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Pcal_1475 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Pcal_0202 ExsB family protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Pcal_0642 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Pcal_2149 archaeosine tRNA-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D Pcal_1042 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Pcal_0100 tRNA(Ile2) 2-agmatinylcytidine synthetase K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D Pcal_0831 tRNA(Met)-cytidine N(4)-acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
C 03012 Translation factors [BR:pcl03012]
D Pcal_0681 translation initiation factor 1A (aeIF-1A) K03236 EIF1A; translation initiation factor 1A
D Pcal_0438 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1
D Pcal_0995 translation initiation factor 2 subunit alpha (aeIF-2a) K03237 EIF2S1; translation initiation factor 2 subunit 1
D Pcal_0835 translation initiation factor 2 subunit beta (aeIF-2b) K03238 EIF2S2; translation initiation factor 2 subunit 2
D Pcal_0242 translation initiation factor 2 subunit gamma (aeIF-2g) K03242 EIF2S3; translation initiation factor 2 subunit 3
D Pcal_2173 translation initiation factor 2B subunit I family (IF-2BI) K03239 EIF2B1; translation initiation factor eIF-2B subunit alpha
D Pcal_1377 initiation factor 2B related protein K03680 EIF2B4; translation initiation factor eIF-2B subunit delta
D Pcal_0434 translation initiation factor 5A precursor (eIF-5A) K03263 EIF5A; translation initiation factor 5A
D Pcal_0638 translation initiation factor eaIF-5B K03243 EIF5B; translation initiation factor 5B
D Pcal_1826 translation initiation factor 6 (aeIF-6) K03264 EIF6; translation initiation factor 6
D Pcal_1111 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pcal_0547 translation elongation factor 1A GTP binding domain family K03231 EEF1A; elongation factor 1-alpha
D Pcal_2114 translation elongation factor 1B (aEF-1B) K03232 EEF1B; elongation factor 1-beta
D Pcal_0213 translation elongation factor 2 (EF-2/EF-G) K03234 EEF2; elongation factor 2
D Pcal_1114 diphthamide biosynthesis protein K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108]
D Pcal_0164 putative ATP binding protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14]
D Pcal_0355 peptide chain release factor subunit 1 (aeRF-1) K03265 ETF1; peptide chain release factor subunit 1
D Pcal_0945 conserved hypothetical protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Pcal_2123 peptidyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]
C 03110 Chaperones and folding catalysts [BR:pcl03110]
D Pcal_1052 thermosome subunit K22447 cct; archaeal chaperonin
D Pcal_1771 thermosome subunit K22447 cct; archaeal chaperonin
D Pcal_1631 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D Pcal_1840 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D Pcal_1810 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D Pcal_1828 prefoldin, alpha subunit K04797 pfdA; prefoldin alpha subunit
D Pcal_0931 prefoldin, beta subunit K04798 pfdB; prefoldin beta subunit
D Pcal_1951 conserved hypothetical protein K09796 pccA; periplasmic copper chaperone A
D Pcal_1569 conserved hypothetical protein K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Pcal_0020 peptidylprolyl isomerase, FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Pcal_1702 Thioredoxin domain protein K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:pcl04131]
D Pcal_0523 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Pcal_1809 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pcal_2115 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pcal_0863 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pcal_0862 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pcal_0029 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Pcal_1111 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pcal_0547 translation elongation factor 1A GTP binding domain family K03231 EEF1A; elongation factor 1-alpha
C 04121 Ubiquitin system [BR:pcl04121]
D Pcal_1849 LSU ribosomal protein L40E K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D Pcal_0307 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D Pcal_0294 SSU ribosomal protein S30E K02983 RP-S30e; small subunit ribosomal protein S30e
C 03051 Proteasome [BR:pcl03051]
D Pcal_0936 transcriptional regulator, Fis family K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Pcal_2008 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pcal_0021 proteasome endopeptidase complex, beta component, Threonine peptidase, MEROPS family T01A K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03032 DNA replication proteins [BR:pcl03032]
D Pcal_0990 monomeric archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2131 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2117 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pcal_0039 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Pcal_0576 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pcal_0996 Nucleolar RNA-binding protein Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D Pcal_0629 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pcal_1050 TOPRIM domain protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D Pcal_0002 cell division control protein 6 K10725 cdc6A; archaeal cell division control protein 6
D Pcal_0084 replicative DNA helicase Mcm K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D Pcal_0991 DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D Pcal_0952 DNA primase large subunit K18882 priL; DNA primase large subunit
D Pcal_0992 conserved hypothetical protein K09723 ginS; DNA replication factor GINS
D Pcal_0125 Protein of unknown function DUF1288 K09723 ginS; DNA replication factor GINS
D Pcal_0780 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Pcal_1049 replicative DNA polymerase I K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pcal_1087 replicative DNA polymerase I K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pcal_0696 DNA polymerase B region K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pcal_0004 transcriptional regulator, Fis family K04800 rfcL; replication factor C large subunit
D Pcal_0005 Replication factor C K04801 rfcS; replication factor C small subunit
D Pcal_0583 replication factor C small subunit K04801 rfcS; replication factor C small subunit
D Pcal_0943 Spo11/DNA topoisomerase VI, subunit A-like protein K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2]
D Pcal_0942 DNA topoisomerase VI, B subunit K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2]
D Pcal_1115 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Pcal_0692 Reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-]
C 03036 Chromosome and associated proteins [BR:pcl03036]
D Pcal_0576 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pcal_1036 Protein of unknown function DUF171 K09142 SPOUT1; methyltransferase [EC:2.1.1.-]
D Pcal_0754 hypothetical protein K03496 parA; chromosome partitioning protein
D Pcal_1247 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D Pcal_1256 chromosome partitioning ATPase, ParA family protein K03496 parA; chromosome partitioning protein
D Pcal_0767 Chromosome segregation ATPase-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Pcal_1570 conserved hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Pcal_2138 conserved hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
C 03400 DNA repair and recombination proteins [BR:pcl03400]
D Pcal_1018 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Pcal_1250 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D Pcal_0066 HhH-GPD family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Pcal_0990 monomeric archaeal DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2131 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
D Pcal_2117 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pcal_0039 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Pcal_1117 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Pcal_0629 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pcal_0884 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Pcal_2076 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Pcal_1781 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Pcal_2108 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D Pcal_1637 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
D Pcal_0356 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
D Pcal_0357 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D Pcal_0411 putative ATP binding protein K04485 radA; DNA repair protein RadA/Sms
D Pcal_1275 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Pcal_0263 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D Pcal_2081 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
D Pcal_0762 transcriptional regulator, Fis family K04483 radA; DNA repair protein RadA
D Pcal_2031 Rad51-like protein K04483 radA; DNA repair protein RadA
D Pcal_1076 holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
D Pcal_1978 AAA ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Pcal_0078 DEAD/DEAH box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
D Pcal_1115 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Pcal_1693 ATP dependent helicase, Lhr family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Pcal_1058 ATP dependent helicase, Lhr family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Pcal_1797 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Pcal_1368 Protein of unknown function DUF650, N-terminal domain protein K22585 nreA; DNA repair protein NreA
D Pcal_0317 Protein of unknown function DUF650, N-terminal domain protein K22585 nreA; DNA repair protein NreA
C 03029 Mitochondrial biogenesis [BR:pcl03029]
D Pcal_0892 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pcal_2062 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pcal_0691 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Pcal_1628 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Pcal_0441 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Pcal_0872 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Pcal_1570 conserved hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Pcal_2138 conserved hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Pcal_1923 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pcal_1946 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pcal_1948 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pcl02000]
D Pcal_1399 conserved hypothetical protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D Pcal_1398 tungstate/molybdate transport system permease protein K15496 wtpB; molybdate/tungstate transport system permease protein
D Pcal_1397 carbohydrate ABC transporter ATP-binding protein, CUT1 family K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6]
D Pcal_0248 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D Pcal_0244 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D Pcal_0243 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Pcal_0214 ABC transporter, periplasmic binding protein, thiB subfamily K02064 thiB; thiamine transport system substrate-binding protein
D Pcal_0215 putative thiamine transport system permease protein K02063 thiP; thiamine transport system permease protein
D Pcal_0216 carbohydrate ABC transporter ATP-binding protein, CUT1 family K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D Pcal_0120 extracellular solute-binding protein, family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Pcal_0364 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein
D Pcal_0365 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein
D Pcal_0366 ABC transporter related protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Pcal_0678 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Pcal_0679 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Pcal_1358 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Pcal_1617 maltooligosaccharide-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Pcal_1618 maltooligosaccharide ABC transporter membrane protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Pcal_1619 maltooligosaccharide ABC transporter membrane protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Pcal_2112 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10196 glcS; glucose/arabinose transport system substrate-binding protein
D Pcal_2111 carbohydrate ABC transporter membrane protein 1, CUT1 family K10197 glcT; glucose/arabinose transport system permease protein
D Pcal_2110 carbohydrate ABC transporter membrane protein 2, CUT1 family K10198 glcU; glucose/arabinose transport system permease protein
D Pcal_1844 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins
D Pcal_1044 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins
D Pcal_1842 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D Pcal_1046 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D Pcal_1841 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Pcal_1047 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Pcal_1045 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Pcal_1843 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Pcal_1355 carbohydrate ABC transporter substrate-binding protein, CUT1 family K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Pcal_1356 carbohydrate ABC transporter membrane protein 1, CUT1 family K02025 ABC.MS.P; multiple sugar transport system permease protein
D Pcal_1357 carbohydrate ABC transporter membrane protein 2, CUT1 family K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Pcal_1882 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Pcal_1881 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein
D Pcal_1880 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein
D Pcal_1879 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Pcal_0848 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_1775 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0446 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0825 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pcal_0847 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0826 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0445 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein
D Pcal_0444 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0827 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0846 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein
D Pcal_0447 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0824 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0845 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pcal_0823 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_0844 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_1774 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pcal_1148 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Pcal_1028 amino acid ABC transporter membrane protein, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein
D Pcal_1027 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Pcal_1231 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pcal_0422 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pcal_0975 oligopeptide binding protein, putative K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pcal_1230 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pcal_0420 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pcal_0974 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pcal_1229 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pcal_0421 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pcal_0973 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pcal_1228 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Pcal_1744 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Pcal_1227 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Pcal_1745 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Pcal_0102 conserved hypothetical protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Pcal_1519 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Pcal_1518 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D Pcal_1559 cobalamin biosynthesis protein K02009 cbiN; cobalt/nickel transport protein
D Pcal_1558 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Pcal_1367 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D Pcal_1375 ABC-3 protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D Pcal_1376 ABC transporter related protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D Pcal_1486 cytochrome c assembly protein K02195 ccmC; heme exporter protein C
D Pcal_0220 ABC-2 type transport system, membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pcal_1407 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pcal_1933 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pcal_0230 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pcal_1936 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pcal_0219 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pcal_1408 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pcal_0231 daunorubicin resistance ABC transporter ATPase subunit K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pcal_1331 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pcal_1642 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Pcal_0653 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Pcal_1006 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Pcal_0238 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Pcal_1641 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Pcal_0612 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Pcal_1955 major facilitator superfamily MFS_1 K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D Pcal_1671 major facilitator superfamily MFS_1 K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D Pcal_1852 conserved hypothetical protein K03442 mscS; small conductance mechanosensitive channel
D Pcal_1215 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D Pcal_1350 zinc transporter, ZIP family K07238 TC.ZIP; zinc transporter, ZIP family
D Pcal_0535 protein of unknown function DUF6, transmembrane K03298 TC.DME; drug/metabolite transporter, DME family
D Pcal_0834 protein of unknown function DUF6, transmembrane K03298 TC.DME; drug/metabolite transporter, DME family
D Pcal_0829 protein of unknown function DUF6, transmembrane K03298 TC.DME; drug/metabolite transporter, DME family
D Pcal_1216 sodium/calcium exchanger membrane region K07301 yrbG; cation:H+ antiporter
D Pcal_0315 TrkA-C domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Pcal_1241 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family
D Pcal_1543 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family
D Pcal_1197 natural resistance-associated macrophage protein K03322 mntH; manganese transport protein
D Pcal_0863 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pcal_0862 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pcal_1212 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter
D Pcal_0496 protein of unknown function DUF125, transmembrane K22736 VIT; vacuolar iron transporter family protein
D Pcal_0110 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein
D Pcal_2139 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein
D Pcal_1116 hypothetical protein K03832 tonB; periplasmic protein TonB
D Pcal_0548 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D Pcal_1907 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Pcal_1906 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Pcal_1370 Rieske (2Fe-2S) domain protein K08355 aoxA; arsenite oxidase small subunit [EC:1.20.2.1 1.20.9.1]
D Pcal_1369 molybdopterin dinucleotide-binding region K08356 aoxB; arsenite oxidase large subunit [EC:1.20.2.1 1.20.9.1]
D Pcal_1325 small GTP-binding protein K04759 feoB; ferrous iron transport protein B
D Pcal_1488 cytochrome c assembly protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D Pcal_1915 cytochrome c assembly protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:pcl02044]
D Pcal_1344 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI
D Pcal_1054 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI
D Pcal_0330 type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI
D Pcal_1345 type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ
D Pcal_1343 type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ
D Pcal_0607 peptidase A24A, prepilin type IV K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D Pcal_1034 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Pcal_1726 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Pcal_1829 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Pcal_1731 signal recognition particle, subunit SRP19 (srp19) K03105 SRP19; signal recognition particle subunit SRP19
D Pcal_0534 Sec-independent protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA
D Pcal_0533 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins
C 02022 Two-component system
C 02035 Bacterial motility proteins [BR:pcl02035]
D Pcal_1344 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI
D Pcal_1054 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI
D Pcal_0330 type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI
D Pcal_1345 type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ
D Pcal_1343 type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ
D Pcal_0607 peptidase A24A, prepilin type IV K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pcl04812]
D Pcal_0028 protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein
D Pcal_1635 actin/actin family protein K18641 K18641; crenactin
D Pcal_0754 hypothetical protein K03496 parA; chromosome partitioning protein
D Pcal_1247 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D Pcal_1256 chromosome partitioning ATPase, ParA family protein K03496 parA; chromosome partitioning protein
D Pcal_0767 Chromosome segregation ATPase-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:pcl04147]
D Pcal_0022 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Pcal_0633 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Pcal_0029 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Pcal_0645 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Pcal_0184 3-Cys thioredoxin peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D Pcal_1111 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pcal_0547 translation elongation factor 1A GTP binding domain family K03231 EEF1A; elongation factor 1-alpha
D Pcal_0213 translation elongation factor 2 (EF-2/EF-G) K03234 EEF2; elongation factor 2
D Pcal_2117 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pcal_0307 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D Pcal_1809 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pcal_2115 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pcal_1805 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Pcal_0839 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pcal_1309 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0781 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_0837 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1084 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pcal_1787 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Pcal_1149 conserved hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D Pcal_1434 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Pcal_0368 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Pcal_0370 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Pcal_0776 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Pcal_1609 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pcal_1709 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Pcal_1412 transcriptional coactivator/pterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Pcal_1741 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Pcal_1402 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pcal_2007 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Pcal_2132 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Pcal_0817 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:pcl02048]
D Pcal_1275 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Pcal_0263 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D Pcal_1276 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2
D Pcal_1268 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Pcal_1267 metal dependent phosphohydrolase K07475 cas3; CRISPR-associated endonuclease Cas3-HD [EC:3.1.-.-]
D Pcal_0265 CRISPR-associated protein, Csa1 family K19085 csa1; CRISPR-associated protein Csa1
D Pcal_1274 CRISPR-associated protein, Csa1 family K19085 csa1; CRISPR-associated protein Csa1
D Pcal_1271 CRISPR-associated autoregulator, Csa2 family K19074 csa2; CRISPR-associated protein Csa2
D Pcal_0266 CRISPR-associated HTH regulatory protein, Csa3 family K07725 csa3; CRISPR-associated protein Csa3
D Pcal_1273 transcriptional regulator, TrmB K07725 csa3; CRISPR-associated protein Csa3
D Pcal_0546 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Pcal_1277 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Pcal_1270 CRISPR-associated protein Cas5 K19089 cas5a_b_c; CRISPR-associated protein Cas5a/b/c
D Pcal_0275 CRISPR-associated RAMP protein, Cmr1 family K07061 cmr1; CRISPR-associated protein Cmr1
D Pcal_1286 CRISPR-associated protein, Cmr1 family K07061 cmr1; CRISPR-associated protein Cmr1
D Pcal_0272 CRISPR-associated protein, Cmr2 family K19076 cmr2; CRISPR-associated protein Cmr2
D Pcal_1284 CRISPR-associated protein, Cmr2 family K19076 cmr2; CRISPR-associated protein Cmr2
D Pcal_1283 hypothetical protein K09127 cmr3; CRISPR-associated protein Cmr3
D Pcal_0271 CRISPR-associated protein, Cmr3 family K09127 cmr3; CRISPR-associated protein Cmr3
D Pcal_0273 CRISPR-associated protein, Cmr4 family K09000 cmr4; CRISPR-associated protein Cmr4
D Pcal_1285 CRISPR-associated protein, Cmr4 family K09000 cmr4; CRISPR-associated protein Cmr4
D Pcal_0276 CRISPR-associated protein, Cmr6 family K19142 cmr6; CRISPR-associated protein Cmr6
D Pcal_1287 CRISPR-associated protein, Cmr6 family K19142 cmr6; CRISPR-associated protein Cmr6
D Pcal_0270 CRISPR-associated protein, Csx1 family K19143 csx1; CRISPR-associated protein Csx1
D Pcal_0576 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pcal_1858 ATPase associated with various cellular activities, AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D Pcal_1137 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pcal_2059 PilT protein domain protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:pcl04090]
C 01504 Antimicrobial resistance genes [BR:pcl01504]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pcl00537]
D Pcal_0645 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pcl03100]
D Pcal_R0004 pseudogene K14218 tRNA-Ala; tRNA Ala
D Pcal_R0012 pseudogene K14218 tRNA-Ala; tRNA Ala
D Pcal_R0018 pseudogene K14218 tRNA-Ala; tRNA Ala
D Pcal_R0020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Pcal_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0006 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0005 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0019 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pcal_R0024 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Pcal_R0008 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pcal_R0014 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pcal_R0007 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pcal_R0027 pseudogene K14233 tRNA-Ser; tRNA Ser
D Pcal_R0017 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Pcal_R0010 pseudogene K14237 tRNA-Val; tRNA Val
D Pcal_R0009 pseudogene K14237 tRNA-Val; tRNA Val
D Pcal_R0013 pseudogene K14237 tRNA-Val; tRNA Val
D Pcal_R0022 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Pcal_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Pcal_R0026 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Pcal_R0015 signal recognition particle RNA K01983 ffs; SRP RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Pcal_0888 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D Pcal_0889 glyceraldehyde oxidoreductase medium chain K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D Pcal_0887 xanthine dehydrogenase, molybdenum binding subunit apoprotein K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]
D Pcal_1178 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D Pcal_1179 pyruvate ferredoxin/flavodoxin oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D Pcal_2135 FAD dependent oxidoreductase K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-]
D Pcal_1700 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18]
D Pcal_1390 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18]
D Pcal_0729 manganese containing catalase K07217 ydbD; manganese catalase [EC:1.11.1.6]
D Pcal_0064 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Pcal_1413 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24129 K24129; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25]
D Pcal_1469 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Pcal_1459 mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1]
D Pcal_1639 Radical SAM domain protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5]
D Pcal_0297 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Pcal_0858 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Pcal_1815 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Pcal_0925 Radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Pcal_2118 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Pcal_0705 Diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98]
D Pcal_0413 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D Pcal_1171 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D Pcal_1089 CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39]
D Pcal_0694 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D Pcal_1237 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Pcal_0156 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Pcal_1739 protein of unknown function DUF89 K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-]
D Pcal_1025 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Pcal_2030 nuclease (SNase domain protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D Pcal_0508 protein of unknown function DUF91 K07503 nucS; endonuclease [EC:3.1.-.-]
D Pcal_0203 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D Pcal_1720 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D Pcal_1096 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Pcal_0360 ATPase associated with various cellular activities, AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Pcal_0415 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Pcal_0954 ATPase associated with various cellular activities, AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Pcal_2013 protein of unknown function DUF62 K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3]
D Pcal_1520 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Pcal_0951 conserved hypothetical protein K01741 E4.2.99.18; DNA-(apurinic or apyrimidinic site) lyase [EC:4.2.99.18]
D Pcal_2009 RNA-3'-phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4]
C 99981 Carbohydrate metabolism
D Pcal_0159 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D Pcal_1225 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D Pcal_0392 formate dehydrogenase delta subunit K02379 fdhD; FdhD protein
D Pcal_0296 4Fe-4S ferredoxin, iron-sulfur binding domain protein K05337 fer; ferredoxin
D Pcal_1017 ferredoxin K05337 fer; ferredoxin
D Pcal_2006 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
D Pcal_2133 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
D Pcal_2134 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03855 fixX; ferredoxin like protein
D Pcal_1442 DsrC family protein K23077 dsrC; dissimilatory sulfite reductase related protein
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D Pcal_0542 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Pcal_2145 transcriptional regulator, XRE family K03627 MBF1; putative transcription factor
D Pcal_0947 nucleoid protein Alba K03622 ssh10b; archaea-specific DNA-binding protein
D Pcal_2141 Small nuclear ribonucleoprotein, LSM family K04796 RUXX; small nuclear ribonucleoprotein
D Pcal_2102 Small nuclear ribonucleoprotein, LSM family K04796 RUXX; small nuclear ribonucleoprotein
D Pcal_1848 conserved hypothetical protein K07743 K07743; transcriptional regulator
D Pcal_1742 putative signal transduction protein with CBS domains K07744 K07744; transcriptional regulator
D Pcal_1789 conserved hypothetical protein K07745 K07745; transcriptional regulator
C 99974 Translation
D Pcal_0433 putative nucleotide binding protein K07572 K07572; putative nucleotide binding protein
D Pcal_1043 putative mRNA 3-end processing factor K07577 K07577; putative mRNA 3-end processing factor
D Pcal_1749 beta-lactamase domain protein K07577 K07577; putative mRNA 3-end processing factor
D Pcal_0236 methyltransferase K07579 K07579; putative methylase
D Pcal_2113 Protein of unknown function DUF1610 K07580 K07580; Zn-ribbon RNA-binding protein
D Pcal_0938 Protein of unknown function DUF54 K07581 K07581; RNA-binding protein
D Pcal_0503 Protein of unknown function DUF54 K07581 K07581; RNA-binding protein
C 99975 Protein processing
D Pcal_0393 hypothetical protein K02380 fdhE; FdhE protein
D Pcal_1565 hypothetical protein K04653 hypC; hydrogenase expression/formation protein HypC
D Pcal_1566 hydrogenase formation HypD protein K04654 hypD; hydrogenase expression/formation protein HypD
D Pcal_1568 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D Pcal_0117 AIR synthase related protein domain protein K04655 hypE; hydrogenase expression/formation protein HypE
D Pcal_1564 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D Pcal_2144 PUA domain containing protein K07398 K07398; conserved protein with predicted RNA binding PUA domain
D Pcal_1324 xanthine dehydrogenase accessory factor K07402 xdhC; xanthine dehydrogenase accessory factor
D Pcal_1326 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class)
D Pcal_2167 Nodulation efficiency protein NfeD K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D Pcal_0719 protein of unknown function DUF1156 K07445 K07445; putative DNA methylase
D Pcal_0616 TBP-interacting protein TIP49 K07472 TIP49; TBP-interacting protein
D Pcal_0873 Translin K07477 K07477; translin
D Pcal_0427 transposase, IS605 OrfB family K07496 K07496; putative transposase
D Pcal_0682 transposase, IS605 OrfB K07496 K07496; putative transposase
D Pcal_1799 hypothetical protein K07496 K07496; putative transposase
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
D Pcal_0860 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D Pcal_2005 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D Pcal_0598 putative serine/threonine protein kinase K07176 K07176; putative serine/threonine protein kinase
D Pcal_1727 putative circadian clock protein, KaiC K08482 kaiC; circadian clock protein KaiC
D Pcal_0010 putative circadian clock protein, KaiC K08482 kaiC; circadian clock protein KaiC
D Pcal_0987 DNA-binding TFAR19-related protein K06875 PDCD5; programmed cell death protein 5
C 99992 Structural proteins
C 99994 Others
D Pcal_1878 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D Pcal_1667 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D Pcal_1938 Parallel beta-helix repeat containing protein K07218 nosD; nitrous oxidase accessory protein
D Pcal_1931 Nitrous oxidase accessory protein-like protein K07218 nosD; nitrous oxidase accessory protein
D Pcal_1190 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Pcal_1926 putative uncharacterized protein involved in response to NO K07234 K07234; uncharacterized protein involved in response to NO
D Pcal_1929 hypothetical protein K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Pcal_1101 ATPase, PilT family K06865 K06865; ATPase
D Pcal_1650 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D Pcal_1156 methionyl-tRNA synthetase, beta subunit K06878 K06878; tRNA-binding protein
D Pcal_1643 membrane protein, putative K06994 K06994; putative drug exporter of the RND superfamily
D Pcal_1153 HAD-superfamily hydrolase, subfamily IA, variant 1 K07025 K07025; putative hydrolase of the HAD superfamily
D Pcal_0554 Haloacid dehalogenase domain protein hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D Pcal_0613 Iron-regulated ABC transporter membrane component SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Pcal_0405 TatD-related deoxyribonuclease K07049 K07049; TatD-related deoxyribonuclease
D Pcal_0599 Sjogrens syndrome scleroderma autoantigen 1 K07143 K07143; UPF0148 protein
D Pcal_0591 conserved hypothetical protein K08975 K08975; putative membrane protein
D Pcal_2078 conserved hypothetical protein K08979 K08979; putative membrane protein
D Pcal_1414 protein of unknown function DUF981 K08980 K08980; putative membrane protein
C 99997 Function unknown
D Pcal_2148 protein of unknown function DUF75 K06869 K06869; uncharacterized protein
D Pcal_1998 conserved hypothetical protein K06869 K06869; uncharacterized protein
D Pcal_1491 Tetratricopeptide TPR_2 repeat protein K06870 K06870; uncharacterized protein
D Pcal_2064 metal dependent phosphohydrolase K06885 K06885; uncharacterized protein
D Pcal_1319 ATPase K06921 K06921; uncharacterized protein
D Pcal_0718 hypothetical protein K06922 K06922; uncharacterized protein
D Pcal_0725 CoA-binding domain protein K06929 K06929; uncharacterized protein
D Pcal_0458 Radical SAM domain protein K06935 K06935; uncharacterized protein
D Pcal_1120 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Pcal_0052 conserved hypothetical protein K06940 K06940; uncharacterized protein
D Pcal_0956 metallophosphoesterase K06953 K06953; uncharacterized protein
D Pcal_1972 photosystem I assembly BtpA K06971 K06971; uncharacterized protein
D Pcal_2066 conserved hypothetical protein K06983 K06983; uncharacterized protein
D Pcal_1546 Predicted hydrolase of the metallo-beta-lactamase superfamily K07022 K07022; uncharacterized protein
D Pcal_0085 conserved hypothetical protein K07033 K07033; uncharacterized protein
D Pcal_0030 beta-lactamase domain protein K07041 K07041; uncharacterized protein
D Pcal_1366 PilT protein domain protein K07064 K07064; uncharacterized protein
D Pcal_1083 protein of unknown function DUF35 K07068 K07068; uncharacterized protein
D Pcal_1310 protein of unknown function DUF35 K07068 K07068; uncharacterized protein
D Pcal_0836 protein of unknown function DUF35 K07068 K07068; uncharacterized protein
D Pcal_0207 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein
D Pcal_1421 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Pcal_0341 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Pcal_0674 hypothetical protein K07090 K07090; uncharacterized protein
D Pcal_0065 peroxiredoxin-like protein K07092 K07092; uncharacterized protein
D Pcal_1443 DsrE family protein K07092 K07092; uncharacterized protein
D Pcal_1432 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Pcal_1512 metallophosphoesterase K07096 K07096; uncharacterized protein
D Pcal_0239 metallophosphoesterase K07098 K07098; uncharacterized protein
D Pcal_0982 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D Pcal_1986 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D Pcal_1478 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein
D Pcal_0964 Radical SAM domain protein K07129 K07129; uncharacterized protein
D Pcal_1877 ATPase, AAA superfamily K07133 K07133; uncharacterized protein
D Pcal_1240 conserved hypothetical protein K07133 K07133; uncharacterized protein
D Pcal_0493 conserved hypothetical protein K07133 K07133; uncharacterized protein
D Pcal_0233 conserved hypothetical protein K07133 K07133; uncharacterized protein
D Pcal_0127 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein
D Pcal_1989 PilT protein domain protein K07158 K07158; uncharacterized protein
D Pcal_1176 protein of unknown function DUF151 K08999 K08999; uncharacterized protein
D Pcal_2156 protein of unknown function DUF763 K09003 K09003; uncharacterized protein
D Pcal_1147 protein of unknown function DUF192 K09005 K09005; uncharacterized protein
D Pcal_0119 protein of unknown function DUF99 K09120 K09120; uncharacterized protein
D Pcal_1779 conserved hypothetical protein K09122 K09122; uncharacterized protein
D Pcal_1652 protein of unknown function DUF355 K09129 K09129; uncharacterized protein
D Pcal_0707 protein of unknown function DUF401 K09133 K09133; uncharacterized protein
D Pcal_2169 AMMECR1 domain protein K09141 K09141; uncharacterized protein
D Pcal_0185 Protein of unknown function DUF429 K09147 K09147; uncharacterized protein
D Pcal_2104 Protein of unknown function DUF460 K09150 K09150; uncharacterized protein
D Pcal_1065 protein of unknown function DUF711 K09157 K09157; uncharacterized protein
D Pcal_2004 protein of unknown function DUF711 K09157 K09157; uncharacterized protein
D Pcal_1665 metal dependent phosphohydrolase K09163 K09163; uncharacterized protein
D Pcal_1232 carbon monoxide dehydrogenase subunit G K09386 K09386; uncharacterized protein
D Pcal_0252 Protein of unknown function DUF504 K09715 K09715; uncharacterized protein
D Pcal_1136 protein of unknown function DUF354 K09726 K09726; uncharacterized protein
D Pcal_2106 conserved hypothetical protein K09730 K09730; uncharacterized protein
D Pcal_0055 conserved hypothetical protein K09732 K09732; uncharacterized protein
D Pcal_0593 Protein of unknown function DUF54 K09736 K09736; uncharacterized protein
D Pcal_2061 Protein of unknown function DUF371 K09738 K09738; uncharacterized protein
D Pcal_1588 conserved hypothetical protein K09742 K09742; uncharacterized protein
D Pcal_0298 protein of unknown function DUF790 K09744 K09744; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 11, 2024