+D GENES KO #

  KEGG Orthology (KO) - Paraburkholderia dioscoreae

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:pdio00010] D PDMSB3_0923 glk; putative Glucokinase / HTH-type transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2] D PDMSB3_2038 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PDMSB3_2457 pfkB; putative ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D PDMSB3_3373 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PDMSB3_0616.1 fbp; Fructose-1,6-bisphosphatase class 1 2 K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D PDMSB3_1775.1 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PDMSB3_0619.1 cbbAP; Fructose-bisphosphate aldolase, plasmid K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_3680 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_1316 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PDMSB3_3809 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PDMSB3_3682 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PDMSB3_0361 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_2173.1 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (modular protein) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_3757 Fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_2845 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PDMSB3_3681 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40] D PDMSB3_0402.1 putative Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D PDMSB3_2573 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PDMSB3_2878 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PDMSB3_4374 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PDMSB3_2877 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PDMSB3_3136.1 acoC; Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_3655 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PDMSB3_2490 adhA; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_2518 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_1324.1 yahK; putative oxidoreductase, Zn-dependent and NAD(P)-binding K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D PDMSB3_3147.1 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D PDMSB3_1400.1 Gluconate 2-dehydrogenase cytochrome c subunit K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0051 acoD; Acetaldehyde dehydrogenase 2 (Acetaldehyde dehydrogenase II) (ACDH-II) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D PDMSB3_3149.1 aldB; aldehyde dehydrogenase B K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D PDMSB3_1434 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_1745 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2024.1 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2503 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3039 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_0185 Galactose mutarotase-like enzyme K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D PDMSB3_0430.1 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D PDMSB3_3823 Galactose mutarotase-like enzyme K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D PDMSB3_1840.1 Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D PDMSB3_1590.1 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D PDMSB3_0811 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PDMSB3_3244.1 Polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D PDMSB3_0101 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D PDMSB3_0570.1 protein of unknown function C 00020 Citrate cycle (TCA cycle) [PATH:pdio00020] D PDMSB3_0161.1 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D PDMSB3_1968.1 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D PDMSB3_3581 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D PDMSB3_0149.1 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PDMSB3_0792.1 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PDMSB3_0146.1 acnA; aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PDMSB3_1574.1 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PDMSB3_2875.1 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PDMSB3_3566 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PDMSB3_1703 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D PDMSB3_1704 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_3697 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PDMSB3_3698 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PDMSB3_1195.1 cat; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_3046.1 Succinyl-CoA:acetate CoA-transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_3171.1 cat; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_0158.1 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PDMSB3_0159.1 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PDMSB3_0156.1 Succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PDMSB3_0157.1 Succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D PDMSB3_1405 fumA; fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D PDMSB3_3254 fumC; fumarate hydratase (fumarase C),aerobic Class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PDMSB3_0152.1 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PDMSB3_0101 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D PDMSB3_2878 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PDMSB3_4374 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PDMSB3_2877 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PDMSB3_3136.1 acoC; Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:pdio00030] D PDMSB3_2038 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PDMSB3_0925 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_1301.1 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_3245.1 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_0924 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D PDMSB3_1220 3-carboxymuconate cyclase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D PDMSB3_0892.1 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D PDMSB3_1769.1 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D PDMSB3_0620.1 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D PDMSB3_3920 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D PDMSB3_0618.1 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PDMSB3_1802.1 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PDMSB3_3810 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PDMSB3_1203 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2] D PDMSB3_1793 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D PDMSB3_1765.1 putative phosphoketolase 1 K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D PDMSB3_1705.1 Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D PDMSB3_1703.1 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D PDMSB3_2825.1 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D PDMSB3_1590.1 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D PDMSB3_0811 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PDMSB3_0933.1 phnN; ribose 1,5-bisphosphokinase K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D PDMSB3_0411 prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D PDMSB3_3782 edd; phosphogluconate dehydratase (6-phosphogluconate dehydratase) K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D PDMSB3_3781 eda; 4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D PDMSB3_2980.1 3-beta-hydroxycholanate 3-dehydrogenase (NAD(+)) 1 K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D PDMSB3_2920 gcd; glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2] D PDMSB3_0958.1 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D PDMSB3_2766.1 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D PDMSB3_2361 tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PDMSB3_3235 gyaR; Glyoxylate reductase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PDMSB3_3779 gntK; thermoresistant gluconokinase (Gluconate kinase) K00851 idnK; gluconokinase [EC:2.7.1.12] D PDMSB3_1959 Sugar kinase, ribokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D PDMSB3_2363 kdgK; 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D PDMSB3_1775.1 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PDMSB3_0619.1 cbbAP; Fructose-bisphosphate aldolase, plasmid K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_3680 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_3373 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PDMSB3_0616.1 fbp; Fructose-1,6-bisphosphatase class 1 2 K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D PDMSB3_2457 pfkB; putative ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:pdio00040] D PDMSB3_2283 kduI; 5-keto 4-deoxyuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D PDMSB3_2284 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D PDMSB3_0089.1 Altronate hydrolase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D PDMSB3_1371.1 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_2084 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_3302 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_1343.1 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_2101 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_3097 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_0620.1 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D PDMSB3_3920 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D PDMSB3_3639 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D PDMSB3_3656 Pentulose/hexulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D PDMSB3_0432.1 xylA; D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D PDMSB3_3638 dalD; D-arabinitol 4-dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D PDMSB3_3825 Sulfoquinovose 1-dehydrogenase K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175] D PDMSB3_1255.1 Alpha-ketoglutaric semialdehyde dehydrogenase 2 K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D PDMSB3_1133.1 aldHT; Aldehyde dehydrogenase, thermostable K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D PDMSB3_1684.1 gucD; Alpha-ketoglutaric semialdehyde dehydrogenase K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D PDMSB3_2376.1 gucD; Alpha-ketoglutaric semialdehyde dehydrogenase K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D PDMSB3_2696.1 D-ribulokinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47] D PDMSB3_2695.1 rbtD; Ribitol 2-dehydrogenase K00039 rbtD; ribitol 2-dehydrogenase [EC:1.1.1.56] C 00051 Fructose and mannose metabolism [PATH:pdio00051] D PDMSB3_0250 Sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D PDMSB3_0014.3 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_0691 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_1353.1 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_1820 xanB; Mannose-6-phosphate isomerase / Mannose-1-phosphate guanylyl transferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_2080 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_2912.1 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_0811 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PDMSB3_0695 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PDMSB3_1358.1 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PDMSB3_2093 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PDMSB3_0696 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D PDMSB3_1359.1 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D PDMSB3_0090.1 pld; Pyridoxal 4-dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D PDMSB3_2141 pld; Pyridoxal 4-dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D PDMSB3_0091.1 L-fuconolactone hydrolase K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120] D PDMSB3_0092.1 2-keto-3-deoxy-L-fuconate dehydrogenase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D PDMSB3_2081.1 rhaD; L-rhamnose 1-dehydrogenase (NADP(+)) K18337 LRA1; L-rhamnose 1-dehydrogenase [EC:1.1.1.378 1.1.1.377 1.1.1.173] D PDMSB3_2082.1 yfaW; putative epimerase/enolase/dehydratase K12661 LRA3; L-rhamnonate dehydratase [EC:4.2.1.90] D PDMSB3_2084.1 LRA; 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)) K21883 lra5; 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) [EC:1.1.1.401] D PDMSB3_2457 pfkB; putative ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D PDMSB3_3373 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PDMSB3_0616.1 fbp; Fructose-1,6-bisphosphatase class 1 2 K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D PDMSB3_0432.1 xylA; D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D PDMSB3_3649 polS; Sorbitol dehydrogenase K08261 E1.1.99.21; D-sorbitol dehydrogenase (acceptor) [EC:1.1.99.21] D PDMSB3_3638 dalD; D-arabinitol 4-dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D PDMSB3_1775.1 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PDMSB3_0619.1 cbbAP; Fructose-bisphosphate aldolase, plasmid K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_3680 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_1316 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PDMSB3_0752 Nucleoside-diphosphate-sugar epimerase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D PDMSB3_0356 Phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] C 00052 Galactose metabolism [PATH:pdio00052] D PDMSB3_0185 Galactose mutarotase-like enzyme K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D PDMSB3_0430.1 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D PDMSB3_3823 Galactose mutarotase-like enzyme K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D PDMSB3_0807 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PDMSB3_1518 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PDMSB3_1343.1 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_2101 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_3097 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_1590.1 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D PDMSB3_0811 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PDMSB3_0923 glk; putative Glucokinase / HTH-type transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2] D PDMSB3_2457 pfkB; putative ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D PDMSB3_2159.1 Mandelate racemase/muconate lactonizing enzyme-like protein K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D PDMSB3_3712 dgoD; galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D PDMSB3_3831 2-keto-3-deoxy-galactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D PDMSB3_3830 dgoA; 2-oxo-3-deoxygalactonate 6-phosphate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] C 00053 Ascorbate and aldarate metabolism [PATH:pdio00053] D PDMSB3_1371.1 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_2084 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_3302 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_0958.1 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D PDMSB3_2766.1 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D PDMSB3_0090.1 pld; Pyridoxal 4-dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D PDMSB3_2141 pld; Pyridoxal 4-dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0062.1 gudD; putative glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D PDMSB3_2869.1 gudD; (D)-glucarate dehydratase 1 K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D PDMSB3_0117 hpcH; 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20] D PDMSB3_3824 araB; L-arabinolactonase K13874 araB; L-arabinonolactonase [EC:3.1.1.15] D PDMSB3_4365 araC; L-arabonate dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25] D PDMSB3_1255.1 Alpha-ketoglutaric semialdehyde dehydrogenase 2 K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D PDMSB3_1259.1 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41] D PDMSB3_1260.1 garD; (D)-galactarate dehydrogenase K01708 garD; galactarate dehydratase [EC:4.2.1.42] D PDMSB3_1253.1 udh; Uronate dehydrogenase K18981 udh; uronate dehydrogenase [EC:1.1.1.203] D PDMSB3_1261.1 udh; Uronate dehydrogenase K18981 udh; uronate dehydrogenase [EC:1.1.1.203] C 00500 Starch and sucrose metabolism [PATH:pdio00500] D PDMSB3_1343.1 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_2101 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_3097 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_1046.1 bglB; Beta-glucosidase B K05350 bglB; beta-glucosidase [EC:3.2.1.21] D PDMSB3_1087.1 bcsA; Cellulose synthase catalytic subunit [UDP-forming] K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D PDMSB3_1553 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D PDMSB3_1552 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D PDMSB3_1818.1 glgA; Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D PDMSB3_0190.1 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D PDMSB3_0905.1 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D PDMSB3_0191.1 Trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D PDMSB3_0187.1 4-alpha-glucanotransferase (amylomaltase) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D PDMSB3_0192.1 glgE; Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D PDMSB3_0189.1 glgX; glycogen debranching enzyme K01214 ISA; isoamylase [EC:3.2.1.68] D PDMSB3_1789.1 glgX; Glycogen operon protein GlgX homolog K01214 ISA; isoamylase [EC:3.2.1.68] D PDMSB3_0186.1 Malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D PDMSB3_0188.1 Malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D PDMSB3_1159 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D PDMSB3_2072 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D PDMSB3_3183 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D PDMSB3_3184 otsB; trehalose-6-phosphate phosphatase, biosynthetic K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D PDMSB3_1890.1 treA; periplasmic trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D PDMSB3_1590.1 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D PDMSB3_0811 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PDMSB3_0923 glk; putative Glucokinase / HTH-type transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2] D PDMSB3_2038 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PDMSB3_0250 Sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00620 Pyruvate metabolism [PATH:pdio00620] D PDMSB3_1434 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_1745 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2024.1 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2503 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3039 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2878 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PDMSB3_4374 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PDMSB3_2877 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PDMSB3_3136.1 acoC; Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_0766.1 mhpF; acetaldehyde-CoA dehydrogenase II, NAD-binding K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D PDMSB3_2490 adhA; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_2518 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_3655 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PDMSB3_1324.1 yahK; putative oxidoreductase, Zn-dependent and NAD(P)-binding K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D PDMSB3_3147.1 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D PDMSB3_1400.1 Gluconate 2-dehydrogenase cytochrome c subunit K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5] D PDMSB3_1764.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_3092.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_3091.1 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D PDMSB3_3681 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40] D PDMSB3_2656 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D PDMSB3_3844 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PDMSB3_3845 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PDMSB3_0174.1 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D PDMSB3_0034.2 acyP; Acylphosphatase 1 K01512 acyP; acylphosphatase [EC:3.6.1.7] D PDMSB3_3353.1 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0051 acoD; Acetaldehyde dehydrogenase 2 (Acetaldehyde dehydrogenase II) (ACDH-II) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D PDMSB3_3149.1 aldB; aldehyde dehydrogenase B K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D PDMSB3_1195.1 cat; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_3046.1 Succinyl-CoA:acetate CoA-transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_3171.1 cat; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_0239.1 lldD; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D PDMSB3_0696.1 poxB; pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D PDMSB3_2563 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D PDMSB3_0647 ldhA; fermentative D-lactate dehydrogenase, NAD-dependent K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D PDMSB3_0949.1 dld; D-lactate dehydrogenase, FAD-binding, NADH independent K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D PDMSB3_0565 FAD/FMN-dependent dehydrogenase K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D PDMSB3_0520 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D PDMSB3_2404.1 gloA; Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D PDMSB3_3036 Lactoylglutathione lyase-like lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D PDMSB3_0206 ycbL; putative metal-binding hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D PDMSB3_2402.1 gloB; Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D PDMSB3_3172 gloB; putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D PDMSB3_0269 ghrA; Glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_1611.1 D-3-phosphoglycerate dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_2785.1 D-3-phosphoglycerate dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_2361 tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PDMSB3_3235 gyaR; Glyoxylate reductase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PDMSB3_3817 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D PDMSB3_4121 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D PDMSB3_0965.1 Oxaloacetate decarboxylase K01003 bcpA; oxaloacetate decarboxylase [EC:4.1.1.112] D PDMSB3_0152.1 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PDMSB3_1405 fumA; fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D PDMSB3_3254 fumC; fumarate hydratase (fumarase C),aerobic Class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PDMSB3_0971 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PDMSB3_0101 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D PDMSB3_0402.1 putative Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D PDMSB3_2573 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PDMSB3_2102 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D PDMSB3_2632 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1307 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PDMSB3_2998 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PDMSB3_1662.1 nifV; Homocitrate synthase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pdio00630] D PDMSB3_2628 aceA; isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30] D PDMSB3_2102 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D PDMSB3_2632 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D PDMSB3_0152.1 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PDMSB3_0161.1 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D PDMSB3_1968.1 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D PDMSB3_3581 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D PDMSB3_0149.1 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PDMSB3_0792.1 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PDMSB3_0146.1 acnA; aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PDMSB3_1574.1 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PDMSB3_1434 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_1745 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2024.1 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2503 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3039 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1955 phaB; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D PDMSB3_3094.1 phaB; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D PDMSB3_0564 glcD; glycolate oxidase subunit, FAD-linked K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D PDMSB3_1056 glcD; glycolate oxidase subunit, FAD-linked K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D PDMSB3_2106 glcD; glycolate oxidase subunit, FAD-linked K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D PDMSB3_0563 glcE; glycolate oxidase FAD binding subunit K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D PDMSB3_1055 glcE; glycolate oxidase FAD binding subunit K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D PDMSB3_2105 glcE; glycolate oxidase FAD binding subunit K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D PDMSB3_0562 glcF; glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D PDMSB3_1054 glcF; glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D PDMSB3_2104 glcF; glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D PDMSB3_0556 katA; Catalase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_0922 Catalase-related peroxidase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_1421.1 srpA; Catalase-related peroxidase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_1891.1 katE; hydroperoxidase HPII(III) (catalase) K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_0269 ghrA; Glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_1611.1 D-3-phosphoglycerate dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_2785.1 D-3-phosphoglycerate dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_2361 tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PDMSB3_3235 gyaR; Glyoxylate reductase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PDMSB3_2171.1 hprA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D PDMSB3_0586.1 cbbZC; Phosphoglycolate phosphatase, chromosomal K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D PDMSB3_3226 Haloacid dehalogenase superfamily enzyme, subfamily IA K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D PDMSB3_3921 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D PDMSB3_0613.1 cbbL; Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D PDMSB3_0614.1 cbbS; Ribulose bisphosphate carboxylase small chain K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D PDMSB3_0039.1 sgaA; Serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D PDMSB3_0496.1 Transcriptional regulator, GntR family / Aspartate aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D PDMSB3_1188 Aromatic-amino-acid aminotransferase 1 K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D PDMSB3_2213.1 Gamma-glutamyl-putrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_2901 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_0625 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_1495.1 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_4281 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PDMSB3_3317.1 Glycine dehydrogenase (decarboxylating) (glycine cleavage system P1 protein) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D PDMSB3_3318.1 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D PDMSB3_4279 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_4280 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein D PDMSB3_1885 gcl; glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47] D PDMSB3_1884 hyi; hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D PDMSB3_1883 glxR; tartronate semialdehyde reductase, NADH-dependent K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D PDMSB3_2026 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D PDMSB3_1468.1 ttuC; putative tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D PDMSB3_1615.1 yeaU; putative tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D PDMSB3_3781 eda; 4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D PDMSB3_3324 NADH-dependent formate dehydrogenase delta subunit FdsD K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D PDMSB3_0534.1 Formate dehydrogenase O alpha subunit / selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PDMSB3_3323 Formate dehydrogenase, alpha subunit, archaeal-type K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PDMSB3_0535.1 fdoH; formate dehydrogenase-O, Fe-S subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PDMSB3_3322 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PDMSB3_0536.1 fdoI; formate dehydrogenase-O, cytochrome b556 subunit K00127 fdoI; formate dehydrogenase subunit gamma D PDMSB3_3321 NADH:ubiquinone oxidoreductase 24 kD subunit K00127 fdoI; formate dehydrogenase subunit gamma D PDMSB3_3632 kynB; Kynurenine formamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D PDMSB3_0431 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D PDMSB3_1506.1 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D PDMSB3_1382.1 fmdA; Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D PDMSB3_1546 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D PDMSB3_0294.1 oxc; putative oxalyl-CoA decarboxylase K01577 oxc; oxalyl-CoA decarboxylase [EC:4.1.1.8] D PDMSB3_0293.1 frc; formyl-CoA transferase, NAD(P)-binding K07749 frc; formyl-CoA transferase [EC:2.8.3.16] D PDMSB3_0832.1 frc; formyl-CoA transferase, NAD(P)-binding K07749 frc; formyl-CoA transferase [EC:2.8.3.16] D PDMSB3_2687.1 Uncharacterized oxidoreductase Sfri_1503 C 00640 Propanoate metabolism [PATH:pdio00640] D PDMSB3_1434 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_1745 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2024.1 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2503 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3039 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3092 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D PDMSB3_1764.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_3092.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_3091.1 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_0281 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_2656 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D PDMSB3_3844 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PDMSB3_3845 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PDMSB3_0174.1 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D PDMSB3_2136.1 gabT; 4-aminobutyrate aminotransferase GabT K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2556.1 puuE; GABA aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2707.1 bauA; Beta-alanine--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PDMSB3_0045.1 Enoyl-CoA hydratase/carnithine racemase K11264 scpB; methylmalonyl-CoA decarboxylase [EC:4.1.1.-] D PDMSB3_3698 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PDMSB3_3697 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PDMSB3_1105.1 bauC; Putative 3-oxopropanoate dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_2023.1 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_4319 bauC; putative 3-oxopropanoate dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_0149.1 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PDMSB3_0792.1 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D PDMSB3_0147.1 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D PDMSB3_0793.1 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D PDMSB3_0794.1 2-methyl-aconitate isomerase K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D PDMSB3_0146.1 acnA; aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PDMSB3_1574.1 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PDMSB3_2628 aceA; isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30] D PDMSB3_1274 mgsA; Methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:pdio00650] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_0107.1 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_1067 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_1352 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_2365.1 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_3068.1 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_0500 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_2052 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_3043 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_0281 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PDMSB3_2132 fabV; Enoyl-[acyl-carrier-protein] reductase [NADH] K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D PDMSB3_0766.1 mhpF; acetaldehyde-CoA dehydrogenase II, NAD-binding K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D PDMSB3_1953 phaC; Poly(3-hydroxyalkanoate) polymerase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D PDMSB3_3090.1 phaC; Poly(3-hydroxyalkanoate) polymerase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D PDMSB3_0110.1 Polyhydroxyalkanoate depolymerase, intracellular K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D PDMSB3_1215 Polyhydroxyalkanoate depolymerase, intracellular K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D PDMSB3_1955 phaB; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D PDMSB3_3094.1 phaB; Acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D PDMSB3_1763 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D PDMSB3_1762 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D PDMSB3_1468.1 ttuC; putative tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D PDMSB3_1615.1 yeaU; putative tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D PDMSB3_0606 maiA; Maleate isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1] D PDMSB3_0158.1 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PDMSB3_0159.1 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PDMSB3_0156.1 Succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PDMSB3_0157.1 Succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D PDMSB3_0729 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D PDMSB3_2136.1 gabT; 4-aminobutyrate aminotransferase GabT K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2556.1 puuE; GABA aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2401.1 spuC; Putrescine--pyruvate aminotransferase K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D PDMSB3_0720.1 ssdA; Succinate-semialdehyde dehydrogenase [NADP(+)] K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_1616.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2281 araE; Alpha-ketoglutaric semialdehyde dehydrogenase 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2406.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2557.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_3320.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_1195.1 cat; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_3046.1 Succinyl-CoA:acetate CoA-transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_3171.1 cat; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D PDMSB3_3115 Alcohol dehydrogenase, class IV K00043 gbd; 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61] D PDMSB3_2375.1 yihU; 3-sulfolactaldehyde reductase K08318 yihU; 4-hydroxybutyrate dehydrogenase / sulfolactaldehyde 3-reductase [EC:1.1.1.61 1.1.1.373] D PDMSB3_0268 liuE; 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D PDMSB3_3060 atoD; acetoacetyl-CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D PDMSB3_3059 atoA; acetoacetyl-CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D PDMSB3_1386 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D PDMSB3_2185.1 D-beta-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D PDMSB3_0875.1 D-(-)-3-hydroxybutyrate oligomer hydrolase K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22] D PDMSB3_0240.1 Acetoacetate decarboxylase K01574 adc; acetoacetate decarboxylase [EC:4.1.1.4] D PDMSB3_1576 putative Acetoacetate decarboxylase K01574 adc; acetoacetate decarboxylase [EC:4.1.1.4] D PDMSB3_2505 Theronine dehydrogenase-like Zn-dependent dehydrogenase K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-] D PDMSB3_1695.1 Penicillin-binding protein, beta-lactamase class C K18372 acmB; methyl acetate hydrolase [EC:3.1.1.114] D PDMSB3_1227 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_1301 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_3299.1 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_4284 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_1302 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00660 C5-Branched dibasic acid metabolism [PATH:pdio00660] D PDMSB3_1227 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_1301 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_3299.1 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_4284 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_1302 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D PDMSB3_0489.1 CAIB/BAIF family protein K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22] D PDMSB3_3698 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PDMSB3_3697 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PDMSB3_0446 conserved protein of unknown function K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56] D PDMSB3_0163.1 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D PDMSB3_2962.1 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D PDMSB3_0165.1 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D PDMSB3_2961.1 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D PDMSB3_0166.1 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D PDMSB3_2378.1 Regulator of RNase E activity RraA C 00562 Inositol phosphate metabolism [PATH:pdio00562] D PDMSB3_2668 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D PDMSB3_1629 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3020 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3249.1 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3706 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3099 putative dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D PDMSB3_3100 idhA; Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D PDMSB3_3107 mocC; Rhizopine catabolism protein MocC K03335 iolE; inosose dehydratase [EC:4.2.1.44] D PDMSB3_3106 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D PDMSB3_3108 iolB; 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D PDMSB3_3105 conserved protein of unknown function K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D PDMSB3_1105.1 bauC; Putative 3-oxopropanoate dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_2023.1 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_4319 bauC; putative 3-oxopropanoate dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_1316 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:pdio00190] D PDMSB3_1319 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D PDMSB3_1320 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D PDMSB3_1321 nuoC; NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D PDMSB3_1322 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D PDMSB3_1323 nuoE; NADH-quinone oxidoreductase subunit E 2 K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D PDMSB3_1324 nuoF; NADH:ubiquinone oxidoreductase, chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D PDMSB3_1325 NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D PDMSB3_1326 nuoH; NADH:ubiquinone oxidoreductase, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D PDMSB3_1327 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D PDMSB3_1328 nqo; NADH-quinone oxidoreductase chain 10 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D PDMSB3_1329 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D PDMSB3_1330 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D PDMSB3_1331 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D PDMSB3_1454.1 nqo; NADH-quinone oxidoreductase chain 13 K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D PDMSB3_1332 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D PDMSB3_0222.1 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D PDMSB3_1528 NADH dehydrogenase, FAD-containing subunit K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D PDMSB3_0158.1 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PDMSB3_0159.1 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PDMSB3_0156.1 Succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PDMSB3_0157.1 Succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D PDMSB3_3977 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D PDMSB3_3976 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D PDMSB3_3975 petC; CYTOCHROME bC1 complex (ubiquinol:ferricytochrome c oxidoreductase), transmembrane subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D PDMSB3_0381 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PDMSB3_1458.1 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D PDMSB3_0376 Cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D PDMSB3_0373 ctaD; Cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D PDMSB3_0456 Heme/copper-type cytochrome/quinol oxidase, subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D PDMSB3_2531 Cytochrome c oxidase, subunit I K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9] D PDMSB3_0372 Cytochrome c oxidase subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D PDMSB3_0457 Heme/copper-type cytochrome/quinol oxidase, subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D PDMSB3_2532 Cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D PDMSB3_0374 ctaG; Cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D PDMSB3_0380 conserved membrane protein of unknown function K02259 COX15; heme a synthase [EC:1.17.99.9] D PDMSB3_1457.1 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D PDMSB3_1456.1 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D PDMSB3_1455.1 cyoA; cytochrome o ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D PDMSB3_0395 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_0704.1 Cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_0715 cioA; ubiquinol oxidase subunit I, cyanide insensitive K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_1248.1 putative Cytochrome bd2, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_2444 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_0394 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_0703.1 Cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_0716 Cytochrome d oxidase cyd, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_1247.1 putative Cytochrome bd2, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_2445 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_0393 ybgT; conserved hypothetical protein K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D PDMSB3_2349 cydX; Cytochrome bd ubiquinol oxidase subunit X K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D PDMSB3_0212 Cytochrome c551/c552 K08738 CYC; cytochrome c D PDMSB3_0865 cyt; Cytochrome c-552 K08738 CYC; cytochrome c D PDMSB3_2520 Cytochrome c551/c552 K08738 CYC; cytochrome c D PDMSB3_2474 atpA; ATP synthase subunit alpha 1 K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D PDMSB3_4297 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D PDMSB3_2481 atpD; F1 sector of membrane-bound ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D PDMSB3_4295 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D PDMSB3_2473 F0F1-type ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D PDMSB3_4296 atpG; F1 sector of membrane-bound ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D PDMSB3_4298 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D PDMSB3_2480 atpC; ATP synthase epsilon chain 2 K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D PDMSB3_4294 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D PDMSB3_2477 atpB; ATP synthase subunit a 2 K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PDMSB3_4301 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PDMSB3_2475 atpF; ATP synthase subunit b 3 K02109 ATPF0B; F-type H+-transporting ATPase subunit b D PDMSB3_4299 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D PDMSB3_2476 atpE; ATP synthase subunit c 2 K02110 ATPF0C; F-type H+-transporting ATPase subunit c D PDMSB3_4300 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D PDMSB3_0726 P-type ATPase, translocating K01535 PMA1; H+-transporting ATPase [EC:7.1.2.1] D PDMSB3_1594.1 P-type ATPase, translocating K01535 PMA1; H+-transporting ATPase [EC:7.1.2.1] D PDMSB3_0993 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D PDMSB3_3152 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D PDMSB3_2741.1 Polyphosphate:ADP phosphotransferase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:pdio00710] D PDMSB3_0613.1 cbbL; Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D PDMSB3_0614.1 cbbS; Ribulose bisphosphate carboxylase small chain K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D PDMSB3_3682 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PDMSB3_3809 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PDMSB3_1775.1 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PDMSB3_0619.1 cbbAP; Fructose-bisphosphate aldolase, plasmid K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_3680 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_3373 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PDMSB3_0616.1 fbp; Fructose-1,6-bisphosphatase class 1 2 K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D PDMSB3_0618.1 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PDMSB3_1802.1 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PDMSB3_3810 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PDMSB3_1793 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D PDMSB3_0617.1 prkB; phosphoribulokinase K28462 prkA_B; phosphoribulokinase [EC:2.7.1.19] D PDMSB3_1316 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PDMSB3_0620.1 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D PDMSB3_3920 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D PDMSB3_1203 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2] D PDMSB3_0971 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PDMSB3_0402.1 putative Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D PDMSB3_3817 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D PDMSB3_4121 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D PDMSB3_0152.1 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:pdio00720] D PDMSB3_2573 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PDMSB3_0402.1 putative Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D PDMSB3_0971 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PDMSB3_0152.1 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PDMSB3_1405 fumA; fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D PDMSB3_3254 fumC; fumarate hydratase (fumarase C),aerobic Class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D PDMSB3_0158.1 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D PDMSB3_0159.1 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D PDMSB3_0156.1 Succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D PDMSB3_0157.1 Succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D PDMSB3_3697 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D PDMSB3_3698 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2875.1 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PDMSB3_3566 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PDMSB3_0146.1 acnA; aconitate hydratase 1 K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PDMSB3_1574.1 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D PDMSB3_2656 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D PDMSB3_3844 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PDMSB3_3845 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PDMSB3_0174.1 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D PDMSB3_0487.1 meh; Mesaconyl-C(4)-CoA hydratase K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153] D PDMSB3_2884 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D PDMSB3_4171 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D PDMSB3_3091.1 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D PDMSB3_1764.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_3092.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_1434 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_1745 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2024.1 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2503 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3039 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:pdio00680] D PDMSB3_0642.1 conserved exported protein of unknown function K16256 mxaA; mxaA protein D PDMSB3_0643.1 conserved membrane protein of unknown function K16257 mxaC; mxaC protein D PDMSB3_0644.1 conserved exported protein of unknown function K16258 mxaK; mxaK protein D PDMSB3_0645.1 conserved protein of unknown function K16259 mxaL; mxaL protein D PDMSB3_0634.1 xoxF; Putative dehydrogenase XoxF K23995 xoxF; lanthanide-dependent methanol dehydrogenase [EC:1.1.2.10] D PDMSB3_1493.1 fdhA; Glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D PDMSB3_3655 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PDMSB3_3654 frmC; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D PDMSB3_0534.1 Formate dehydrogenase O alpha subunit / selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PDMSB3_3323 Formate dehydrogenase, alpha subunit, archaeal-type K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D PDMSB3_0535.1 fdoH; formate dehydrogenase-O, Fe-S subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PDMSB3_3322 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PDMSB3_0536.1 fdoI; formate dehydrogenase-O, cytochrome b556 subunit K00127 fdoI; formate dehydrogenase subunit gamma D PDMSB3_3321 NADH:ubiquinone oxidoreductase 24 kD subunit K00127 fdoI; formate dehydrogenase subunit gamma D PDMSB3_3324 NADH-dependent formate dehydrogenase delta subunit FdsD K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D PDMSB3_0625 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_1495.1 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_0039.1 sgaA; Serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D PDMSB3_2171.1 hprA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D PDMSB3_2845 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PDMSB3_0971 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PDMSB3_0152.1 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PDMSB3_1775.1 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PDMSB3_0619.1 cbbAP; Fructose-bisphosphate aldolase, plasmid K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_3680 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D PDMSB3_3373 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PDMSB3_0616.1 fbp; Fructose-1,6-bisphosphatase class 1 2 K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D PDMSB3_2457 pfkB; putative ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D PDMSB3_0603.1 fhcA; Formyltransferase/hydrolase complex Fhc subunit A K00200 fwdA; formylmethanofuran dehydrogenase subunit A [EC:1.2.7.12] D PDMSB3_0604.1 Formylmethanofuran dehydrogenase subunit B K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12] D PDMSB3_0601.1 Formylmethanofuran dehydrogenase subunit C K00202 fwdC; formylmethanofuran dehydrogenase subunit C [EC:1.2.7.12] D PDMSB3_0602.1 ffsA; Formylmethanofuran--tetrahydromethanopterin formyltransferase K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101] D PDMSB3_0629.1 mch; Methenyltetrahydromethanopterin cyclohydrolase K01499 mch; methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] D PDMSB3_0631.1 mtdB; NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase K10714 mtdB; methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-] D PDMSB3_0626.1 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147] D PDMSB3_1764.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_3092.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_3091.1 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D PDMSB3_1434 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_1745 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2024.1 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2503 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3039 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2573 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PDMSB3_0361 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_2173.1 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (modular protein) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_3757 Fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_0100 Phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PDMSB3_3312 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PDMSB3_1963 Phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:pdio00910] D PDMSB3_1382.1 fmdA; Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D PDMSB3_2115 Nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D PDMSB3_2111 nasD; nitrite reductase, large subunit, nucleotide-and Fe/S-cluster binding K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D PDMSB3_2112 nirD; nitrite reductase, NAD(P)H-binding, small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D PDMSB3_1633.1 nifD; Nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D PDMSB3_1632.1 nifK; Nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D PDMSB3_1634.1 nifH; Nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH D PDMSB3_0194 2-nitropropane dioxygenase-like enzyme K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D PDMSB3_0260 2-nitropropane dioxygenase-like enzyme K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D PDMSB3_2410 2-nitropropane dioxygenase-like enzyme K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D PDMSB3_0609 nitA; Aliphatic nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_3027 Nitrilase 3 K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_2548.1 gdh; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D PDMSB3_3774 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PDMSB3_2213.1 Gamma-glutamyl-putrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_2901 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_4028 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D PDMSB3_4027 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PDMSB3_2860.1 cynS; Cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104] D PDMSB3_2485 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D PDMSB3_0284 Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D PDMSB3_1309 can; Carbonic anhydrase 2 K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D PDMSB3_1848.1 cynT; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:pdio00920] D PDMSB3_0271 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D PDMSB3_1873 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D PDMSB3_1874 cysT; sulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein D PDMSB3_1875 Sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D PDMSB3_1876 cysA; sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D PDMSB3_0331 tauA; taurine transporter subunit; periplasmic-binding component of ABC superfamily K15551 tauA; taurine transport system substrate-binding protein D PDMSB3_0333 tauC; taurine transporter subunit; membrane component of ABC superfamily K15552 tauC; taurine transport system permease protein D PDMSB3_0332 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D PDMSB3_0003.1 ssuA; Putative aliphatic sulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0413.1 Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0661.1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0771.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1382 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1445 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1504 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1940 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2161 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2166 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2171 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2923.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0411.1 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein D PDMSB3_0659.1 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1503 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1845 ssuC; alkanesulfonate transport protein (ABC superfamily, membrane) K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1942 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2159 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2168 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2925.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_0412.1 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_0660.1 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1502 ssuB; Aliphatic sulfonates import ATP-binding protein SsuB 2 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1846 ssuB; Aliphatic sulfonates import ATP-binding protein SsuB 1 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1941 conserved protein of unknown function K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2160 tauB; Taurine import ATP-binding protein TauB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2167 nrtD; Nitrate transport ATP-binding protein NrtD K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2175 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2924.1 Putative ATP-binding protein BruAb2_1123 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_0415.1 Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D PDMSB3_1542.1 ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D PDMSB3_1844 ssuD; FMNH(2)-dependent alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D PDMSB3_2100.1 putative NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D PDMSB3_3037.1 sfnF; NADH-dependent FMN reductase SfnF K00299 ssuE; FMN reductase [EC:1.5.1.38] D PDMSB3_0853 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D PDMSB3_0852 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D PDMSB3_1863 cysC; Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D PDMSB3_0851 cysH; Thioredoxin-dependent 5'-adenylylsulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D PDMSB3_1335.1 soeA; Sulfite dehydrogenase subunit A K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6] D PDMSB3_1336.1 soeB; Sulfite dehydrogenase subunit B K21308 soeB; sulfite dehydrogenase (quinone) subunit SoeB D PDMSB3_1337.1 soeC; Sulfite dehydrogenase subunit C K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC D PDMSB3_2165 Sulfite oxidase-like oxidoreductase K17225 soxC; sulfane dehydrogenase subunit SoxC D PDMSB3_2164 Cytochrome c K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6] D PDMSB3_2113 Sulfite reductase, alpha subunit (Flavoprotein) K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D PDMSB3_0849 Sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D PDMSB3_2234.1 Sulfite reductase (NADPH) hemoprotein beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D PDMSB3_2703.1 Oxidoreductase (flavoprotein) K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D PDMSB3_0224.1 sseA; putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PDMSB3_0852.1 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_1528.1 srpH; Serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_1585 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_2665 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_2757.1 srpH; Serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_1441 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D PDMSB3_1587 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D PDMSB3_0133 metXS; Homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D PDMSB3_2794.1 Homoserine acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D PDMSB3_0179.1 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D PDMSB3_2158 56kDa selenium binding protein (SBP56) K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] D PDMSB3_3036.1 sfnG; FMNH(2)-dependent dimethylsulfone monooxygenase K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35] D PDMSB3_0270.1 4-hydroxybutyrate--CoA ligase 2 K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D PDMSB3_2051 dmdB; 3-methylmercaptopropionyl-CoA ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D PDMSB3_3064.1 alkK; Medium-chain-fatty-acid--CoA ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D PDMSB3_0499 dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D PDMSB3_1044 dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D PDMSB3_3065.1 dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D PDMSB3_3286 dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:pdio00061] D PDMSB3_2656 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D PDMSB3_3844 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D PDMSB3_3845 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D PDMSB3_0174.1 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D PDMSB3_3215 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein D PDMSB3_3363 acpP; Acyl carrier protein 2 K02078 acpP; acyl carrier protein D PDMSB3_3364 Phosphopantetheine-containing protein K02078 acpP; acyl carrier protein D PDMSB3_3217 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D PDMSB3_3218 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D PDMSB3_3351 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PDMSB3_3355 3-oxoacyl-(Acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PDMSB3_3213 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PDMSB3_3352 3-oxoacyl-(Acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PDMSB3_0328.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_0952.1 Putative short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_0991 tsaC; 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1273 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1468 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1612 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1613 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1739 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2226 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2242 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2371.1 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2391.1 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2479.1 Acetoacetyl-CoA reductase/3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3216 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3323.1 putative 3-beta-hydroxycholanate 3-dehydrogenase (NAD(+)) 1 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3335.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3353 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2581 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PDMSB3_3112.1 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PDMSB3_2648 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PDMSB3_3093.1 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PDMSB3_2132 fabV; Enoyl-[acyl-carrier-protein] reductase [NADH] K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D PDMSB3_1736 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_3902 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:pdio00071] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_0501 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2364.1 atoB; Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_0500 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_2052 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_3043 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_0281 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PDMSB3_0321.1 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_0332.1 mmgC; Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_0488.1 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1028 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1069 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1070 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1348 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1746 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1807 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_2349.1 Acyl-CoA dehydrogenase, N-terminal domain K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_2390.1 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_3186.1 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_0316.1 Acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D PDMSB3_2351.1 Acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D PDMSB3_1740 fadE; acyl coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D PDMSB3_0637 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D PDMSB3_1736 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_3902 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_1898.1 alkB; Alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D PDMSB3_0222 NAD(FAD)-dependent dehydrogenase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2399.1 thcD; Rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2476.1 thcD; Rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2483.1 camA; Putidaredoxin reductase CamA K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_3295.1 hcaD; 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_3655 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PDMSB3_2490 adhA; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_2518 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis [PATH:pdio00074] D PDMSB3_3200 acpS; Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D PDMSB3_3215 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein D PDMSB3_3363 acpP; Acyl carrier protein 2 K02078 acpP; acyl carrier protein D PDMSB3_3364 Phosphopantetheine-containing protein K02078 acpP; acyl carrier protein D PDMSB3_3217 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] C 00100 Steroid biosynthesis [PATH:pdio00100] D PDMSB3_2935.1 Phytoene/squalene synthetase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:pdio00561] D PDMSB3_2026 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1324.1 yahK; putative oxidoreductase, Zn-dependent and NAD(P)-binding K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D PDMSB3_3732 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PDMSB3_3219 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D PDMSB3_3614 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PDMSB3_0523 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PDMSB3_0750 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PDMSB3_2091.1 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PDMSB3_1293 Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D PDMSB3_3292 Lysophospholipase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23] D PDMSB3_1294 Glycosyltransferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] C 00564 Glycerophospholipid metabolism [PATH:pdio00564] D PDMSB3_0365 gpsA; glycerol-3-phosphate dehydrogenase (NAD+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D PDMSB3_3730 glpD; sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D PDMSB3_3614 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PDMSB3_0523 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PDMSB3_0750 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PDMSB3_2091.1 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PDMSB3_1293 Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D PDMSB3_1629 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3020 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3249.1 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3706 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_0337 ugpQ; glycerophosphodiester phosphodiesterase, cytosolic K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D PDMSB3_0048 eutB; ethanolamine ammonia-lyase, large subunit, heavy chain K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D PDMSB3_0049 eutC; Ethanolamine ammonia-lyase light chain K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D PDMSB3_2104.1 CDP-diacylglycerol pyrophosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26] D PDMSB3_2588 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D PDMSB3_1305 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D PDMSB3_1304 psd; Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D PDMSB3_3192 pgsA; phosphatidylglycerophosphate synthetase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D PDMSB3_3819 Phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D PDMSB3_0496 clsB; Cardiolipin synthase B K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D PDMSB3_2600.1 Phosphatidylserine/phosphatidylglycerophosphate / cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D PDMSB3_2611 clsA; Cardiolipin synthase A K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D PDMSB3_2178 clsC; Cardiolipin synthase C K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D PDMSB3_3253 clsC; Cardiolipin synthase C K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] C 00565 Ether lipid metabolism D PDMSB3_1629 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3020 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3249.1 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3706 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism [PATH:pdio00600] D PDMSB3_2273 Hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_2278 Hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_3061.1 Ceramide glucosyltransferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_2199 Arylsulfatase A family protein K01130 atsA; arylsulfatase [EC:3.1.6.1] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:pdio00592] D PDMSB3_0501 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2364.1 atoB; Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:pdio01040] D PDMSB3_0408.1 Fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D PDMSB3_3551 Fatty-acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D PDMSB3_2036 tesA; Esterase TesA K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D PDMSB3_2481.1 Acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D PDMSB3_0509 yciA; Acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D PDMSB3_3088.1 Acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:pdio00230] D PDMSB3_1334 NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D PDMSB3_1590.1 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D PDMSB3_0811 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PDMSB3_0411 prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D PDMSB3_0178.1 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PDMSB3_1270 purD; phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D PDMSB3_3554 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D PDMSB3_1223 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D PDMSB3_2042 purL; phosphoribosylformyl-glycineamide synthetase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D PDMSB3_0592 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D PDMSB3_3677 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D PDMSB3_3678 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D PDMSB3_3679 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D PDMSB3_3778 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PDMSB3_3751 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D PDMSB3_0429 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D PDMSB3_0480 5''-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D PDMSB3_1944 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PDMSB3_1952 yfiH; conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D PDMSB3_2824.1 Inosine-uridine preferring nucleoside hydrolase K01239 E3.2.2.1; purine nucleosidase [EC:3.2.2.1] D PDMSB3_3859 putative hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D PDMSB3_2566 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D PDMSB3_2828 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PDMSB3_3391 yggV; dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D PDMSB3_0667 Xanthine dehydrogenase, small subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D PDMSB3_3341 Xanthine dehydrogenase, small subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D PDMSB3_0668 Xanthine dehydrogenase, molybdopterin binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D PDMSB3_3342 Xanthine dehydrogenase, molybdopterin binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D PDMSB3_0872.1 Xanthine dehydrogenase, molybdenum binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D PDMSB3_1791.1 Xanthine dehydrogenase, molybdenum binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D PDMSB3_0873.1 yagS; putative oxidoreductase with FAD-binding domain K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D PDMSB3_1792.1 yagS; putative oxidoreductase with FAD-binding domain K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D PDMSB3_0874.1 yagT; putative oxidoreductase, 2Fe-2S subunit K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D PDMSB3_1793.1 Xanthine dehydrogenase iron-sulfur subunit K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D PDMSB3_2564 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PDMSB3_4330 GMP synthase family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PDMSB3_3345 guaD; Guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D PDMSB3_3388 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D PDMSB3_1384.1 Ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PDMSB3_3854 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PDMSB3_3853 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PDMSB3_4032 Deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1] D PDMSB3_3385 bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (fragment) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D PDMSB3_3386 protein of unknown function K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D PDMSB3_3151 ppx; Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D PDMSB3_3056 (P)ppGpp synthetase, RelA/SpoT family K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D PDMSB3_2577.1 conserved membrane protein of unknown function K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D PDMSB3_2814 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D PDMSB3_3849 Sugar kinase, ribokinase K00856 ADK; adenosine kinase [EC:2.7.1.20] D PDMSB3_0216.1 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D PDMSB3_3344 Adenine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D PDMSB3_3603 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PDMSB3_2966 cpdA; 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D PDMSB3_0751 apaH; Bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D PDMSB3_1863 cysC; Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D PDMSB3_0853 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D PDMSB3_0852 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D PDMSB3_2169 putative flavoprotein involved in K+ transport K22879 hpyO; FAD-dependent urate hydroxylase [EC:1.14.13.113] D PDMSB3_2421 5-hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D PDMSB3_2426 OHCU decarboxylase K13485 PRHOXNB; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D PDMSB3_2429 hyuE; Hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3] D PDMSB3_2427 puuE; allantoinase K16842 hpxB; allantoinase [EC:3.5.2.5] D PDMSB3_2425 alc; putative allantoicase 1 K01477 alc; allantoicase [EC:3.5.3.4] D PDMSB3_3806 alc; putative allantoicase 2 K01477 alc; allantoicase [EC:3.5.3.4] D PDMSB3_2424 allA; Ureidoglycolate lyase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D PDMSB3_3805 allA; Ureidoglycolate lyase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D PDMSB3_0093.1 Ureidoglycolate lyase K16856 ugl; ureidoglycolate lyase [EC:4.3.2.3] D PDMSB3_0238.1 Ureidoglycolate lyase K16856 ugl; ureidoglycolate lyase [EC:4.3.2.3] D PDMSB3_0818 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D PDMSB3_0819 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D PDMSB3_0820 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D PDMSB3_1746.1 hpxW; Oxamate amidohydrolase proenzyme K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] D PDMSB3_2060.1 hpxW; Oxamate amidohydrolase proenzyme K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] D PDMSB3_2485 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:pdio00240] D PDMSB3_3168 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PDMSB3_3169 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PDMSB3_0748 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PDMSB3_1005.1 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PDMSB3_0749 pyrC; Dihydroorotase-like protein K01465 URA4; dihydroorotase [EC:3.5.2.3] D PDMSB3_2058.1 Putative amidohydrolase K01465 URA4; dihydroorotase [EC:3.5.2.3] D PDMSB3_3768 pyrC; dihydro-orotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D PDMSB3_0225 pyrD; Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D PDMSB3_0224 2-polyprenylphenol hydroxylase-like oxidoreductase K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D PDMSB3_1827 pyrD; dihydro-orotate oxidase, FMN-linked K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D PDMSB3_4123 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D PDMSB3_3822 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D PDMSB3_2591 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D PDMSB3_2828 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PDMSB3_1265 yhdE; putative septum formation protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D PDMSB3_2941 ygjP; putative metal dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D PDMSB3_2847 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D PDMSB3_3307 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D PDMSB3_0480 5''-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D PDMSB3_1944 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PDMSB3_1272 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D PDMSB3_0747 pyrR; Pyrimidine operon regulatory protein / Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D PDMSB3_2648.1 cdd; Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D PDMSB3_2887 codA; Cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D PDMSB3_0899 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D PDMSB3_1384.1 Ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PDMSB3_3854 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PDMSB3_3853 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PDMSB3_2064 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PDMSB3_3560 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PDMSB3_3262 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D PDMSB3_3006 NADPH-dependent glutamate synthase beta chain-like oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D PDMSB3_3005 yeiA; putative oxidoreductase subunit K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D PDMSB3_3003 dht; D-hydantoinase/dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D PDMSB3_0524.1 hyuC; N-carbamoyl-L-amino-acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_2854.1 Amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_3007 hyuC; N-carbamoyl-L-amino-acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_0624 ydfG; L-allo-threonine dehydrogenase, NAD(P)-binding K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D PDMSB3_1203.1 rutE; oxidoreductase subunit of the alternative pyrimidine degradation pathway K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:pdio00250] D PDMSB3_3548 nadB; quinolinate synthase, L-aspartate oxidase (B protein) subunit K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D PDMSB3_1477 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D PDMSB3_0227 L-asparaginase/GlutRNAGln amidotransferase subunit D K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D PDMSB3_1881 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D PDMSB3_3529 iaaA; isoaspartyl dipeptidase with L-asparaginase activity K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PDMSB3_0651 asD; Bifunctional aspartate aminotransferase and L-aspartate beta-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12] D PDMSB3_1910 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PDMSB3_0039.1 sgaA; Serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D PDMSB3_3611 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PDMSB3_0966 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PDMSB3_2814 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D PDMSB3_3778 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PDMSB3_0748 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PDMSB3_1005.1 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PDMSB3_0729 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D PDMSB3_2136.1 gabT; 4-aminobutyrate aminotransferase GabT K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2556.1 puuE; GABA aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2401.1 spuC; Putrescine--pyruvate aminotransferase K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D PDMSB3_0720.1 ssdA; Succinate-semialdehyde dehydrogenase [NADP(+)] K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_1616.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2281 araE; Alpha-ketoglutaric semialdehyde dehydrogenase 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2406.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2557.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_3320.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_4028 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D PDMSB3_4027 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PDMSB3_2548.1 gdh; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D PDMSB3_3774 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PDMSB3_4286 putA; fused DNA-binding transcriptional regulator; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D PDMSB3_2213.1 Gamma-glutamyl-putrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_2901 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_3168 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PDMSB3_3169 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PDMSB3_1975.1 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D PDMSB3_0389 putative phosphosugar isomerase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_1519 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_4145 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_0178.1 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:pdio00260] D PDMSB3_2654 lysC; Aspartate kinase Ask_LysC K00928 lysC; aspartate kinase [EC:2.7.2.4] D PDMSB3_0167.1 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PDMSB3_1911 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PDMSB3_0213.1 thrB; Homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D PDMSB3_1912 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PDMSB3_0899.1 ltaE; L-allo-threonine aldolase, PLP-dependent K01620 ltaE; threonine aldolase [EC:4.1.2.48] D PDMSB3_3117 ltaE; Low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D PDMSB3_0625 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_1495.1 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_0039.1 sgaA; Serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D PDMSB3_2171.1 hprA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D PDMSB3_0269 ghrA; Glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_1611.1 D-3-phosphoglycerate dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_2785.1 D-3-phosphoglycerate dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D PDMSB3_2361 tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PDMSB3_3235 gyaR; Glyoxylate reductase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D PDMSB3_2026 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D PDMSB3_0361 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_2173.1 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (modular protein) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_3757 Fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_0100 Phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PDMSB3_3312 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PDMSB3_1963 Phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D PDMSB3_0624 ydfG; L-allo-threonine dehydrogenase, NAD(P)-binding K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D PDMSB3_0014.1 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D PDMSB3_0015.1 tdh; threonine 3-dehydrogenase, NAD(P)-binding K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D PDMSB3_4281 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PDMSB3_3317.1 Glycine dehydrogenase (decarboxylating) (glycine cleavage system P1 protein) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D PDMSB3_3318.1 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D PDMSB3_4279 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_4280 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein D PDMSB3_1305 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D PDMSB3_1490.1 betA; choline dehydrogenase, a flavoprotein K00108 betA; choline dehydrogenase [EC:1.1.99.1] D PDMSB3_1491.1 betB; betaine aldehyde dehydrogenase, NAD-dependent K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D PDMSB3_1502.1 Ring-hydroxylating dioxygenase, large terminal subunit K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251] D PDMSB3_1503.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251] D PDMSB3_1498.1 stcD; putative N-methylproline demethylase K21833 dgcA; N,N-dimethylglycine/sarcosine dehydrogenase [EC:1.5.7.3] D PDMSB3_1499.1 Iron-sulfur cluster-binding protein K21834 dgcB; N,N-dimethylglycine/sarcosine dehydrogenase ferredoxin subunit D PDMSB3_1500.1 Electron transfer flavoprotein, alpha subunit K25960 etfA; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit alpha D PDMSB3_1501.1 Electron transfer flavoprotein, beta subunit K25961 etfB; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit beta D PDMSB3_1484 soxA; Sarcosine oxidase subunit alpha K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D PDMSB3_1482.1 soxB; Sarcosine oxidase subunit beta K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D PDMSB3_1485.1 Sarcosine oxidase gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D PDMSB3_1483.1 Sarcosine oxidase delta subunit K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1] D PDMSB3_1481.1 sdaB; L-serine deaminase II K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D PDMSB3_4283 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D PDMSB3_0481 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PDMSB3_1980 psdht; Phenylserine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PDMSB3_2297 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PDMSB3_2888 ygeA; putative racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D PDMSB3_0173.1 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D PDMSB3_0171.1 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D PDMSB3_2116.1 doeD; Diaminobutyrate--2-oxoglutarate transaminase K15785 doeD; L-2,4-diaminobutyrate transaminase [EC:2.6.1.76] D PDMSB3_3319.1 Uncharacterized aminotransferase y4uB K15785 doeD; L-2,4-diaminobutyrate transaminase [EC:2.6.1.76] C 00270 Cysteine and methionine metabolism [PATH:pdio00270] D PDMSB3_0852.1 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_1528.1 srpH; Serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_1585 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_2665 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_2757.1 srpH; Serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_1441 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D PDMSB3_1587 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D PDMSB3_1962 metC; putative cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D PDMSB3_1856.1 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D PDMSB3_0149 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PDMSB3_3114.1 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_3116.1 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_3811 speE; Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_2770.1 lasI; Acyl-homoserine-lactone synthase K13060 lasI; acyl homoserine lactone synthase [EC:2.3.1.184] D PDMSB3_3093 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D PDMSB3_1952 yfiH; conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D PDMSB3_1388 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_1883.1 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_1253 ytsP; Protein YtsP K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D PDMSB3_1163 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_2678 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_4173 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PDMSB3_1894.1 acdS; 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D PDMSB3_2654 lysC; Aspartate kinase Ask_LysC K00928 lysC; aspartate kinase [EC:2.7.2.4] D PDMSB3_0167.1 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PDMSB3_1911 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PDMSB3_0133 metXS; Homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D PDMSB3_2794.1 Homoserine acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D PDMSB3_3071 mdeA; L-methionine gamma-lyase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D PDMSB3_0179.1 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D PDMSB3_3087.1 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_3685 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_0353 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D PDMSB3_4357 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D PDMSB3_0354 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D PDMSB3_0224.1 sseA; putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PDMSB3_0651 asD; Bifunctional aspartate aminotransferase and L-aspartate beta-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12] D PDMSB3_2888 ygeA; putative racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D PDMSB3_0152.1 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D PDMSB3_1481.1 sdaB; L-serine deaminase II K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D PDMSB3_4283 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D PDMSB3_3297 cysM; cysteine synthase B (O-acetylserine sulfhydrolase B) K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D PDMSB3_0100 Phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PDMSB3_3312 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PDMSB3_2201 putative spermidine synthase with an N-terminal membrane domain C 00280 Valine, leucine and isoleucine degradation [PATH:pdio00280] D PDMSB3_3087.1 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_3685 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_0281 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PDMSB3_0321.1 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_0332.1 mmgC; Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_0488.1 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1028 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1069 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1070 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1348 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1746 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_1807 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_2349.1 Acyl-CoA dehydrogenase, N-terminal domain K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_2390.1 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_3186.1 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D PDMSB3_2194.1 bcd; Acyl-CoA dehydrogenase, short-chain specific K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_0501 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2364.1 atoB; Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_0984.1 Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D PDMSB3_2022.1 NAD-dependent L-serine dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D PDMSB3_2176.1 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D PDMSB3_1105.1 bauC; Putative 3-oxopropanoate dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_2023.1 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_4319 bauC; putative 3-oxopropanoate dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2707.1 bauA; Beta-alanine--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PDMSB3_1754 accA; Biotin carboxylase / Biotin carboxyl carrier protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D PDMSB3_2191.1 accA; Biotin carboxylase / Biotin carboxyl carrier protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D PDMSB3_1753 Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D PDMSB3_2193.1 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D PDMSB3_2192.1 Methylglutaconyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D PDMSB3_0268 liuE; 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D PDMSB3_3060 atoD; acetoacetyl-CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D PDMSB3_3059 atoA; acetoacetyl-CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_0316.1 Acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D PDMSB3_2180.1 Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pdio00290] D PDMSB3_0481 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PDMSB3_1980 psdht; Phenylserine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PDMSB3_2297 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D PDMSB3_0163.1 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D PDMSB3_2962.1 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D PDMSB3_0165.1 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D PDMSB3_2961.1 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D PDMSB3_0166.1 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D PDMSB3_1227 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_1301 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_3299.1 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_4284 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_1302 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D PDMSB3_0997 ilvC; Ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D PDMSB3_1303 ilvC; acetohydroxy acid isomeroreductase and 2-dehydropantoate 2-reductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D PDMSB3_0391.1 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PDMSB3_0866 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PDMSB3_1584.1 ilvD; Dihydroxy-acid dehydratase 2 K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PDMSB3_3087.1 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_3685 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_1910 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PDMSB3_1307 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D PDMSB3_2998 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:pdio00300] D PDMSB3_1911 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PDMSB3_2654 lysC; Aspartate kinase Ask_LysC K00928 lysC; aspartate kinase [EC:2.7.2.4] D PDMSB3_0167.1 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PDMSB3_1007.1 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_2833 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3330.1 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3337.1 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3347.1 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3438 Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3802 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D PDMSB3_2607 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D PDMSB3_3536 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D PDMSB3_2606 Succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D PDMSB3_2609 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PDMSB3_0147 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D PDMSB3_3336.1 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D PDMSB3_4042 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D PDMSB3_0496.1 Transcriptional regulator, GntR family / Aspartate aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D PDMSB3_1188 Aromatic-amino-acid aminotransferase 1 K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D PDMSB3_3895 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D PDMSB3_3894 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D PDMSB3_1685.1 1-pyrroline-4-hydroxy-2-carboxylate deaminase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] C 00310 Lysine degradation [PATH:pdio00310] D PDMSB3_0494.1 NAD-dependent aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D PDMSB3_1704 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_0637 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2888 ygeA; putative racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D PDMSB3_0720.1 ssdA; Succinate-semialdehyde dehydrogenase [NADP(+)] K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_1616.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2281 araE; Alpha-ketoglutaric semialdehyde dehydrogenase 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2406.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2557.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_3320.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_3121 putative acyl-CoA transferase/carnitine dehydratase K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D PDMSB3_0323 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D PDMSB3_2590.1 Glycine/D-amino acid oxidase, deaminating K26064 amaD; D-lysine oxidase D PDMSB3_1300.1 lhpI; Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00220 Arginine biosynthesis [PATH:pdio00220] D PDMSB3_2484 argI; ornithine carbamoyltransferase 1 K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D PDMSB3_3610 argF; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D PDMSB3_3611 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PDMSB3_0966 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PDMSB3_1721.1 Urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6] D PDMSB3_1720.1 Urea carboxylase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D PDMSB3_1738.1 atzF; Allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D PDMSB3_0818 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D PDMSB3_0819 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D PDMSB3_0820 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D PDMSB3_2483 arcA; Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D PDMSB3_1975.1 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D PDMSB3_2213.1 Gamma-glutamyl-putrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_2901 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_3168 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D PDMSB3_3169 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D PDMSB3_2485 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D PDMSB3_2548.1 gdh; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D PDMSB3_3774 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PDMSB3_1910 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PDMSB3_2912 argA; Amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D PDMSB3_3879 argJ; Glutamate N-acetyltransferase / Amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D PDMSB3_0136 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D PDMSB3_4127 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D PDMSB3_3536 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D PDMSB3_0915 Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] D PDMSB3_1981 Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] D PDMSB3_2014.1 Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:pdio00330] D PDMSB3_2887 codA; Cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D PDMSB3_2005.1 N-methylhydantoinase A/acetone carboxylase, beta subunit K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D PDMSB3_2130.1 N-methylhydantoinase A K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D PDMSB3_2954 N-methylhydantoinase A/acetone carboxylase, beta subunit K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D PDMSB3_3072.1 N-methylhydantoinase A K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D PDMSB3_2004.1 N-methylhydantoinase B/acetone carboxylase, alpha subunit K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D PDMSB3_2131.1 N-methylhydantoinase B K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D PDMSB3_2953 N-methylhydantoinase B/acetone carboxylase, alpha subunit K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D PDMSB3_3071.1 N-methylhydantoinase B K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D PDMSB3_0900 Ornithine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D PDMSB3_2011.1 Arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase K01480 speB; agmatinase [EC:3.5.3.11] D PDMSB3_2208.1 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D PDMSB3_3114.1 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_3116.1 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_3811 speE; Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_2214.1 spuC; Putrescine--pyruvate aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_4368 speG; spermidine N1-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D PDMSB3_1932.1 aruH; Arginine--pyruvate transaminase AruH K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84] D PDMSB3_0938 gbuA; guanidinobutyrase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7] D PDMSB3_0192 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_0550.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_1745.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2051.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2241 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_1569 astA; Arginine N-succinyltransferase subunit alpha K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D PDMSB3_1570 astA; arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D PDMSB3_1572 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D PDMSB3_1568 astC; succinylornithine transaminase, PLP-dependent K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D PDMSB3_1571 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D PDMSB3_1573 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D PDMSB3_1601.1 Glycine/D-amino acid oxidase, deaminating K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D PDMSB3_2220.1 puuB; gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D PDMSB3_2297.1 Glycine/D-amino acid oxidases (deaminating) K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D PDMSB3_2209.1 puuC; gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D PDMSB3_0351.1 ooxA; Opine oxidase subunit A K24954 ooxA; octopine oxidase subunit A D PDMSB3_2001.1 ooxA; Opine oxidase subunit A K24954 ooxA; octopine oxidase subunit A D PDMSB3_0353.1 ooxB; Opine oxidase subunit B K24955 ooxB; octopine oxidase subunit B D PDMSB3_2003.1 ooxB; Opine oxidase subunit B K24955 ooxB; octopine oxidase subunit B D PDMSB3_0560 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D PDMSB3_1680.1 Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D PDMSB3_4286 putA; fused DNA-binding transcriptional regulator; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D PDMSB3_3864 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D PDMSB3_3796 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D PDMSB3_0599.1 Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D PDMSB3_1906.1 putative eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] D PDMSB3_3101.1 putative eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] D PDMSB3_0323 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D PDMSB3_2089.1 lhpH; Trans-3-hydroxy-L-proline dehydratase K01777 prdF; proline racemase [EC:5.1.1.4] D PDMSB3_1300.1 lhpI; Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1] D PDMSB3_0546.1 Putative acetamidase/formamidase D PDMSB3_2201 putative spermidine synthase with an N-terminal membrane domain C 00340 Histidine metabolism [PATH:pdio00340] D PDMSB3_3997 hisG; ATP-phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D PDMSB3_2815 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D PDMSB3_0605.1 HisA/hisF family protein K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D PDMSB3_3991 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D PDMSB3_3992 hisH; Imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D PDMSB3_3989 hisF; imidazole glycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D PDMSB3_3994 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D PDMSB3_0408 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3310 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3995 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3996 hisD; bifunctional histidinal dehydrogenase and histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D PDMSB3_1232.1 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PDMSB3_1540 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PDMSB3_2944 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PDMSB3_3359 Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PDMSB3_1542 hutU; Urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D PDMSB3_1544 hutI; Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D PDMSB3_1081.1 hutG; Formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D PDMSB3_1545 Formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D PDMSB3_1546 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1096 egtD; Histidine N-alpha-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] D PDMSB3_3352.1 egtD; Histidine N-alpha-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] C 00350 Tyrosine metabolism [PATH:pdio00350] D PDMSB3_0408 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3310 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3995 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_1388 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_1883.1 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_0279.1 vllY; Hemolysin VllY K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PDMSB3_4118 vllY; Hemolysin VllY K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PDMSB3_0641 hmgA; Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D PDMSB3_0403 maiA; putative maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D PDMSB3_0642 Fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D PDMSB3_0302 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D PDMSB3_2486.1 dhaS; Putative aldehyde dehydrogenase DhaS K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D PDMSB3_3655 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PDMSB3_2490 adhA; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_2518 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_0783.1 hpaC; 4-hydroxyphenylacetate 3-monooxygenase reductase component K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D PDMSB3_1096.1 hpcB; 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] D PDMSB3_1097.1 hpcC; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D PDMSB3_1095.1 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D PDMSB3_1098.1 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D PDMSB3_1099.1 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D PDMSB3_1094.1 hpcG; 2-oxo-hept-4-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D PDMSB3_1093.1 yfaU; putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid-like aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D PDMSB3_0720.1 ssdA; Succinate-semialdehyde dehydrogenase [NADP(+)] K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_1616.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2281 araE; Alpha-ketoglutaric semialdehyde dehydrogenase 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2406.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2557.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_3320.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_0608 Cupin 2 conserved barrel domain protein K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4] D PDMSB3_2488.1 Gentisate 1,2-dioxygenase K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4] D PDMSB3_0402 nagK; Fumarylpyruvate hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:pdio00360] D PDMSB3_4323 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D PDMSB3_2486.1 dhaS; Putative aldehyde dehydrogenase DhaS K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D PDMSB3_3917 paaK; phenylacetyl-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D PDMSB3_3916 paaI; phenylacetate pathway hotdog-fold thioesterase K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D PDMSB3_4107 paaA; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D PDMSB3_4108 paaB; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D PDMSB3_4109 paaC; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D PDMSB3_4110 paaD; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D PDMSB3_4111 paaJ; subunit of the phenylacetly-CoA oxygenase/reductase K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D PDMSB3_3915 paaG; acyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_0107.1 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_1067 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_1352 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_2365.1 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_3068.1 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_0408 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3310 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3995 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_1388 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_1883.1 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_1493 Acetyltransferase, ribosomal protein N-acetylase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D PDMSB3_1494 yhhY; putative acetyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D PDMSB3_0279.1 vllY; Hemolysin VllY K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PDMSB3_4118 vllY; Hemolysin VllY K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PDMSB3_1762.1 dadA; D-amino acid dehydrogenase 3 K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D PDMSB3_3285 dadA; D-amino acid dehydrogenase, small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D PDMSB3_4026 dadA; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D PDMSB3_0323 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D PDMSB3_3594 katG; catalase/hydroperoxidase HPI(I) K03782 katG; catalase-peroxidase [EC:1.11.1.21] D PDMSB3_0192 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_0550.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_1745.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2051.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2241 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_1033.1 Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D PDMSB3_0222 NAD(FAD)-dependent dehydrogenase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2399.1 thcD; Rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2476.1 thcD; Rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2483.1 camA; Putidaredoxin reductase CamA K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_3295.1 hcaD; 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_0763.1 mhpA; 3-(3-hydroxyphenyl)propionate hydroxylase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D PDMSB3_1879.1 2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D PDMSB3_2268.1 3-(3-hydroxy-phenyl)propionate hydroxylase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D PDMSB3_2997.1 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D PDMSB3_0764.1 mhpB; 2,3-dihydroxyphenylpropionate 1,2-dioxygenase K05713 mhpB; 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16] D PDMSB3_0769.1 mhpC; 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase K05714 mhpC; 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase [EC:3.7.1.14] D PDMSB3_0765.1 mhpD; 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D PDMSB3_0767.1 mhpE; 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D PDMSB3_0766.1 mhpF; acetaldehyde-CoA dehydrogenase II, NAD-binding K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00380 Tryptophan metabolism [PATH:pdio00380] D PDMSB3_0612 kynA; Tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D PDMSB3_3634 kynA; Tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D PDMSB3_3632 kynB; Kynurenine formamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D PDMSB3_0611 kynU; Kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D PDMSB3_3633 kynU; Kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D PDMSB3_2386.1 Aminocarboxymuconate-semialdehyde decarboxylase K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] D PDMSB3_1704 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_0637 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1977.1 Pyruvate decarboxylase K04103 ipdC; indolepyruvate decarboxylase [EC:4.1.1.74] D PDMSB3_0609 nitA; Aliphatic nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_3027 Nitrilase 3 K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_0192 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_0550.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_1745.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2051.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2241 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2103.1 mdlY; Mandelamide hydrolase K21801 iaaH; indoleacetamide hydrolase [EC:3.5.1.-] D PDMSB3_0556 katA; Catalase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_0922 Catalase-related peroxidase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_1421.1 srpA; Catalase-related peroxidase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_1891.1 katE; hydroperoxidase HPII(III) (catalase) K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_3594 katG; catalase/hydroperoxidase HPI(I) K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pdio00400] D PDMSB3_0568 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PDMSB3_2197.1 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PDMSB3_4033 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D PDMSB3_2301.1 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D PDMSB3_3843 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D PDMSB3_2303.1 4-hydroxyphenylpyruvate dioxygenase K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118] D PDMSB3_2300.1 aroE; Shikimate dehydrogenase (NADP(+)) K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24] D PDMSB3_3837 aroE; Shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D PDMSB3_4034 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71] D PDMSB3_3308 aroA; 5-enolpyruvylshikimate-3-phosphate synthetase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D PDMSB3_3066 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D PDMSB3_3922 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PDMSB3_3923 trpG; bifunctional protein:[Includes: para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase); anthranilate synthase component II] K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PDMSB3_3924 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D PDMSB3_0170.1 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D PDMSB3_3925 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D PDMSB3_0173.1 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D PDMSB3_0171.1 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D PDMSB3_3377 Chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D PDMSB3_3311 pheA; Chorismate mutase / Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D PDMSB3_3309 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D PDMSB3_4292 pheC; Prephenate dehydratase / Arogenate dehydratase K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91] D PDMSB3_0408 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3310 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3995 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_1388 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_1883.1 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_4323 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:pdio00410] D PDMSB3_0889 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D PDMSB3_0729 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D PDMSB3_2136.1 gabT; 4-aminobutyrate aminotransferase GabT K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2556.1 puuE; GABA aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0890 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D PDMSB3_3006 NADPH-dependent glutamate synthase beta chain-like oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D PDMSB3_3005 yeiA; putative oxidoreductase subunit K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D PDMSB3_3003 dht; D-hydantoinase/dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D PDMSB3_0524.1 hyuC; N-carbamoyl-L-amino-acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_2854.1 Amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_3007 hyuC; N-carbamoyl-L-amino-acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_2707.1 bauA; Beta-alanine--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_0281 mmgC; Acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D PDMSB3_1105.1 bauC; Putative 3-oxopropanoate dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_2023.1 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D PDMSB3_4319 bauC; putative 3-oxopropanoate dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:pdio00430] D PDMSB3_0729 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D PDMSB3_2744.1 ggt; Glutathione hydrolase proenzyme K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_3123 ggt; Glutathione hydrolase proenzyme K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_3725 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_2548.1 gdh; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D PDMSB3_3091.1 Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D PDMSB3_1764.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D PDMSB3_3092.1 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:pdio00440] D PDMSB3_0865.1 Phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D PDMSB3_0866.1 ppd; Phosphonopyruvate decarboxylase K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] D PDMSB3_2222 phnX; Phosphonoacetaldehyde hydrolase K05306 phnX; phosphonoacetaldehyde hydrolase [EC:3.11.1.1] D PDMSB3_1181.1 putative NADP dependent glyceraldehyde-3-phosphat dehydrogenase K00206 phnY; phosphonoacetaldehyde dehydrogenase [EC:1.2.1.-] D PDMSB3_1180.1 phnA; Phosphonoacetate hydrolase K19670 phnA; phosphonoacetate hydrolase [EC:3.11.1.2] D PDMSB3_3466 phnA; Phosphonoacetate hydrolase K19670 phnA; phosphonoacetate hydrolase [EC:3.11.1.2] D PDMSB3_0867.1 phnW; 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D PDMSB3_1174.1 phnW; 2-aminoethylphosphonate--pyruvate transaminase 2 K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D PDMSB3_2223 phnW; 2-aminoethylphosphonate--pyruvate transaminase 1 K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D PDMSB3_0928.1 phnI; carbon-phosphorus lyase complex subunit K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D PDMSB3_0930.1 phnG; carbon-phosphorus lyase complex subunit K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D PDMSB3_0929.1 phnH; Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D PDMSB3_0925.1 phnL; carbon-phosphorus lyase complex subunit K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D PDMSB3_0924.1 phnM; carbon-phosphorus lyase complex subunit K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D PDMSB3_0927.1 phnJ; carbon-phosphorus lyase complex subunit K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] C 00450 Selenocompound metabolism [PATH:pdio00450] D PDMSB3_1962 metC; putative cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D PDMSB3_1856.1 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D PDMSB3_1531.1 putative cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D PDMSB3_0054.1 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PDMSB3_0263.2 Pyridine nucleotide-disulfide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PDMSB3_0688.1 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PDMSB3_0934 trxB; thioredoxin reductase 1 K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PDMSB3_2274.1 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PDMSB3_2313 Ferredoxin--NADP reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PDMSB3_0853 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D PDMSB3_0852 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D PDMSB3_0531.1 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D PDMSB3_0538.1 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D PDMSB3_0895 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:pdio00460] D PDMSB3_1046.1 bglB; Beta-glucosidase B K05350 bglB; beta-glucosidase [EC:3.2.1.21] D PDMSB3_0609 nitA; Aliphatic nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_3027 Nitrilase 3 K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_2744.1 ggt; Glutathione hydrolase proenzyme K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_3123 ggt; Glutathione hydrolase proenzyme K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_3725 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_0227 L-asparaginase/GlutRNAGln amidotransferase subunit D K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D PDMSB3_1881 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D PDMSB3_3529 iaaA; isoaspartyl dipeptidase with L-asparaginase activity K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PDMSB3_0625 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_1495.1 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_1382.1 fmdA; Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00470 D-Amino acid metabolism [PATH:pdio00470] D PDMSB3_2617 dadX; alanine racemase 2, PLP-binding K01775 alr; alanine racemase [EC:5.1.1.1] D PDMSB3_3070.1 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PDMSB3_0323 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D PDMSB3_3887 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PDMSB3_2888 ygeA; putative racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D PDMSB3_1975.1 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D PDMSB3_1403 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D PDMSB3_3892 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D PDMSB3_1477 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D PDMSB3_0147 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D PDMSB3_3336.1 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D PDMSB3_4042 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D PDMSB3_2089.1 lhpH; Trans-3-hydroxy-L-proline dehydratase K01777 prdF; proline racemase [EC:5.1.1.4] D PDMSB3_1683.1 putative 4-hydroxyproline 2-epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D PDMSB3_2311.1 4-hydroxyproline 2-epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D PDMSB3_2308.1 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster K22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-] D PDMSB3_2310.1 D-amino-acid oxidase K21061 lhpB; D-hydroxyproline dehydrogenase subunit beta [EC:1.5.99.-] D PDMSB3_2309.1 conserved protein of unknown function K22550 lhpD; D-hydroxyproline dehydrogenase subunit gamma D PDMSB3_1685.1 1-pyrroline-4-hydroxy-2-carboxylate deaminase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D PDMSB3_2312.1 1-pyrroline-4-hydroxy-2-carboxylate deaminase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D PDMSB3_1255.1 Alpha-ketoglutaric semialdehyde dehydrogenase 2 K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D PDMSB3_1762.1 dadA; D-amino acid dehydrogenase 3 K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D PDMSB3_3285 dadA; D-amino acid dehydrogenase, small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D PDMSB3_4026 dadA; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:pdio00480] D PDMSB3_2744.1 ggt; Glutathione hydrolase proenzyme K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_3123 ggt; Glutathione hydrolase proenzyme K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_3725 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_1087 chaC; Glutathione-specific gamma-glutamylcyclotransferase K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D PDMSB3_1112 chaC; Glutathione-specific gamma-glutamylcyclotransferase K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D PDMSB3_3743 Gamma-glutamylcyclotransferase K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D PDMSB3_4160 ybgL; putative lactam utilization protein, UPF0271 family K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D PDMSB3_4158 ybgJ; putative hydrolase subunit K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D PDMSB3_4159 ybgK; putative hydrolase subunit K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D PDMSB3_4332 putative glutamate--cysteine ligase 2 K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D PDMSB3_0353 Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D PDMSB3_4357 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D PDMSB3_0354 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D PDMSB3_0862 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D PDMSB3_1835.1 Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D PDMSB3_3369 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D PDMSB3_0111.1 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_0931 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_1051 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_1084 Glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_1289.1 gstB; Glutathione S-transferase GstB K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_1353 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2130 gstB; Glutathione S-transferase GstB K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2231.1 gstA; Protein GstA K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2294 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2367 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_3191.1 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_4153 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2875.1 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PDMSB3_3566 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PDMSB3_0892.1 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D PDMSB3_1769.1 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D PDMSB3_0925 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_1301.1 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_3245.1 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_2363.1 btuE; Thioredoxin/glutathione peroxidase BtuE K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D PDMSB3_2612 gpx; Hydroperoxy fatty acid reductase gpx1 K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D PDMSB3_3883 putative Peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D PDMSB3_3114.1 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_3116.1 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_3811 speE; Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D PDMSB3_2201 putative spermidine synthase with an N-terminal membrane domain D PDMSB3_3746 Glutathione S-transferase B B 09107 Glycan biosynthesis and metabolism C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pdio00520] D PDMSB3_3760 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D PDMSB3_3317 mupP; N-acetylmuramic acid 6-phosphate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D PDMSB3_0512 amgK; N-acetylmuramate/N-acetylglucosamine kinase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D PDMSB3_0511 murU; N-acetylmuramate alpha-1-phosphate uridylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D PDMSB3_0391 nagE; N-acetylglucosamine permease IIC component / N-acetylglucosamine-specific phosphotransferase enzyme IIB component / N-acetylglucosamine-specific phosphotransferase enzyme IIA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D PDMSB3_4146 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D PDMSB3_0053.3 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_0764 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_2723.1 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_3998 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D PDMSB3_3612 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D PDMSB3_1339 Chitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D PDMSB3_3199 nagZ; Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D PDMSB3_0388 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D PDMSB3_4251 putative N-acetylglucosamine kinase K18676 gspK; glucosamine kinase [EC:2.7.1.8] D PDMSB3_3160 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D PDMSB3_0389 putative phosphosugar isomerase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_1519 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_4145 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_0250 Sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D PDMSB3_2038 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PDMSB3_0014.3 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_0691 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_1353.1 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_1820 xanB; Mannose-6-phosphate isomerase / Mannose-1-phosphate guanylyl transferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_2080 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_2912.1 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_0923 glk; putative Glucokinase / HTH-type transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2] D PDMSB3_3244.1 Polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D PDMSB3_1590.1 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D PDMSB3_0811 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PDMSB3_1343.1 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_2101 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_3097 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_1371.1 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_2084 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_3302 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_0807 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PDMSB3_1518 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PDMSB3_0356 Phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D PDMSB3_1553 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D PDMSB3_0754 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0786 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] C 00541 Biosynthesis of various nucleotide sugars [PATH:pdio00541] D PDMSB3_4146 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D PDMSB3_0427 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D PDMSB3_2846 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D PDMSB3_0426 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D PDMSB3_3602 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D PDMSB3_0053.3 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_0764 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_2723.1 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_0845.1 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D PDMSB3_0210 yraO; DnaA initiator-associating factor for replication initiation K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D PDMSB3_0524 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D PDMSB3_3301 rfaE; D-beta-D-heptose 7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D PDMSB3_0309 D-beta-D-heptose 1-phosphate adenylyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D PDMSB3_3300 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D PDMSB3_1343.1 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_2101 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_3097 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D PDMSB3_1371.1 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_2084 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_3302 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D PDMSB3_1904 yfbF; undecaprenyl phosphate-L-Ara4FN transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D PDMSB3_1901 putative xylanase/chitin deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D PDMSB3_0308.1 tphA1I; Terephthalate 1,2-dioxygenase, reductase component 1 K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D PDMSB3_1131.1 2-polyprenylphenol hydroxylase-like oxidoreductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D PDMSB3_3535 ascD; CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D PDMSB3_0754 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0786 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0753 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PDMSB3_0785 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PDMSB3_0755 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_1345.1 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_1498 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_0756 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PDMSB3_1378 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PDMSB3_0794 rffA; TDP-4-oxo-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D PDMSB3_4262 vioA; dTDP-4-amino-4,6-dideoxy-D-glucose transaminase K20429 vioA; dTDP-4-amino-4,6-dideoxy-D-glucose transaminase [EC:2.6.1.33] D PDMSB3_0014.3 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_0691 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_1353.1 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_1820 xanB; Mannose-6-phosphate isomerase / Mannose-1-phosphate guanylyl transferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_2080 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_2912.1 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PDMSB3_0695 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PDMSB3_1358.1 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PDMSB3_2093 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D PDMSB3_0696 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D PDMSB3_1359.1 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D PDMSB3_0752 Nucleoside-diphosphate-sugar epimerase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation D PDMSB3_1804 Beta-galactosidase/beta-glucuronidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis [PATH:pdio00540] D PDMSB3_2580 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D PDMSB3_0017.3 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D PDMSB3_3882 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D PDMSB3_2583 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D PDMSB3_2663 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D PDMSB3_2579 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D PDMSB3_3600 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D PDMSB3_0814 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D PDMSB3_0148 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D PDMSB3_2389 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D PDMSB3_2293 Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D PDMSB3_0399 Lipid A deacylase K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D PDMSB3_0812 rfaC; Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D PDMSB3_0960 Lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D PDMSB3_3688 rfaF; ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] C 00542 O-Antigen repeat unit biosynthesis C 00550 Peptidoglycan biosynthesis [PATH:pdio00550] D PDMSB3_3998 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D PDMSB3_3612 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D PDMSB3_3888 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D PDMSB3_3892 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D PDMSB3_3895 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D PDMSB3_3887 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PDMSB3_3894 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D PDMSB3_2589 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D PDMSB3_3133 uppP; Undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PDMSB3_3485 uppP; Undecaprenyl-diphosphatase 1 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PDMSB3_3893 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D PDMSB3_3889 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D PDMSB3_3836 mtgA; Biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_2133 Membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_2390 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_4039 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_3891 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_0119 mrdB; cell wall shape-determining protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_0120 mrdA; Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D PDMSB3_0862.1 penA; putative peptidoglycan D,D-transpeptidase PenA K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PDMSB3_3896 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PDMSB3_0322 dacA; D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D PDMSB3_3673 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:pdio00552] D PDMSB3_3133 uppP; Undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PDMSB3_3485 uppP; Undecaprenyl-diphosphatase 1 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PDMSB3_0851.1 Exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:pdio00543] D PDMSB3_0698 wcaI; putative glycosyl transferase K03208 wcaI; putative colanic acid biosynthesis glycosyltransferase WcaI D PDMSB3_1367 wcaI; putative glycosyl transferase K03208 wcaI; putative colanic acid biosynthesis glycosyltransferase WcaI D PDMSB3_0700 Acetyltransferase (Isoleucine patch superfamily) K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-] D PDMSB3_1365 wcaF; putative glycose-acyl transferase K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-] D PDMSB3_0059.3 algI; putative alginate O-acetylase AlgI K19294 algI; alginate O-acetyltransferase complex protein AlgI D PDMSB3_0060.3 Alginate O-acetyltransferase complex protein AlgJ K19295 algJ; alginate O-acetyltransferase complex protein AlgJ D PDMSB3_0061.3 Alginate O-acetyltransferase complex protein AlgJ K19295 algJ; alginate O-acetyltransferase complex protein AlgJ D PDMSB3_0852.1 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_1528.1 srpH; Serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_1585 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_2665 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D PDMSB3_2757.1 srpH; Serine acetyltransferase, plasmid K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:pdio00730] D PDMSB3_2980 thiC; hydroxymethylpyrimidine moiety synthesis in thiamin biosynthesis K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D PDMSB3_0742 putative hydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D PDMSB3_2620 thiD; bifunctional hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D PDMSB3_1646.1 nifS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_1656.1 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_2865 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_4011 thiO; putative thiamine biosynthesis oxidoreductase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D PDMSB3_0228.1 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D PDMSB3_4009 thiG; thiamin biosynthesis ThiGH complex subunit K03149 thiG; thiazole synthase [EC:2.8.1.10] D PDMSB3_4008 thiE; Thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D PDMSB3_3818 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D PDMSB3_3272 rsgA; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D PDMSB3_3603 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:pdio00740] D PDMSB3_1414.1 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D PDMSB3_3468 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D PDMSB3_3416 ribD; Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D PDMSB3_3735 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D PDMSB3_1068 ribH; 6,7-dimethyl-8-ribityllumazine synthase 2 K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D PDMSB3_3469 ribE; riboflavin synthase beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D PDMSB3_3417 ribE; Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D PDMSB3_3555 ribF; bifunctional riboflavin kinase and FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D PDMSB3_0783.1 hpaC; 4-hydroxyphenylacetate 3-monooxygenase reductase component K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D PDMSB3_2781.1 putative flavin reductase K23462 tgnA; flavin-dependent trigonelline monooxygenase, reductase component [EC:1.5.1.36] D PDMSB3_2100.1 putative NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D PDMSB3_3037.1 sfnF; NADH-dependent FMN reductase SfnF K00299 ssuE; FMN reductase [EC:1.5.1.38] D PDMSB3_1431.1 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D PDMSB3_1334 NTP pyrophosphohydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D PDMSB3_0740.1 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PDMSB3_3952 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:pdio00750] D PDMSB3_3626 pdxH; Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D PDMSB3_1551 pdxY; pyridoxal kinase 2/pyridoxine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D PDMSB3_0399.1 ydbC; putative aldo/keto reductase, NAD(P)-binding K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D PDMSB3_1001.1 ydbC; putative aldo/keto reductase, NAD(P)-binding K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D PDMSB3_3312 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PDMSB3_0516 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D PDMSB3_3201 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D PDMSB3_1912 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:pdio00760] D PDMSB3_3548 nadB; quinolinate synthase, L-aspartate oxidase (B protein) subunit K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D PDMSB3_3298.1 nadX; putative L-aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D PDMSB3_3550 nadA; quinolinate synthase, subunit A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D PDMSB3_3549 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D PDMSB3_3238 pncB; Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D PDMSB3_0480 5''-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D PDMSB3_1944 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PDMSB3_1268 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D PDMSB3_2149 Zn-finger containing NTP pyrophosphohydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D PDMSB3_1169.1 nadE; NAD synthetase, NH3/glutamine-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5] D PDMSB3_1136 nadE; Glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D PDMSB3_3820 ygaD; conserved hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D PDMSB3_1918.1 Nicotinamide phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12] D PDMSB3_0574 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D PDMSB3_0532 pntAA; NAD(P) transhydrogenase subunit alpha part 1 K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D PDMSB3_0533 conserved membrane protein of unknown function K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D PDMSB3_0534 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D PDMSB3_0834.1 NAD/NADP transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D PDMSB3_0674.1 nicA; Nicotinate dehydrogenase subunit A K18029 nicA; nicotinate dehydrogenase subunit A [EC:1.17.2.1] D PDMSB3_2712.1 nicA; Nicotinate dehydrogenase subunit A K18029 nicA; nicotinate dehydrogenase subunit A [EC:1.17.2.1] D PDMSB3_0673.1 Isoquinoline 1-oxidoreductase beta subunit K18030 nicB; nicotinate dehydrogenase subunit B [EC:1.17.2.1] D PDMSB3_2711.1 nicB; Nicotinate dehydrogenase subunit B K18030 nicB; nicotinate dehydrogenase subunit B [EC:1.17.2.1] D PDMSB3_0606 maiA; Maleate isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1] D PDMSB3_2720.1 putative 6-hydroxynicotinate reductase K20449 hnr; 6-hydroxynicotinate reductase [EC:1.3.7.1] D PDMSB3_2713.1 Ena; Enamidase K15358 ena; enamidase [EC:3.5.2.18] D PDMSB3_0720.1 ssdA; Succinate-semialdehyde dehydrogenase [NADP(+)] K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_1616.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2281 araE; Alpha-ketoglutaric semialdehyde dehydrogenase 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2406.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_2557.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_3320.1 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D PDMSB3_0230 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein K19186 kdhB; 6-hydroxypseudooxynicotine dehydrogenase subunit beta [EC:1.5.99.14] C 00770 Pantothenate and CoA biosynthesis [PATH:pdio00770] D PDMSB3_1227 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_1301 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_3299.1 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_4284 putative Thiamine pyrophosphate-dependent enzyme, carboligase or decarboxylase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D PDMSB3_1302 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D PDMSB3_0997 ilvC; Ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D PDMSB3_1303 ilvC; acetohydroxy acid isomeroreductase and 2-dehydropantoate 2-reductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D PDMSB3_0391.1 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PDMSB3_0866 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PDMSB3_1584.1 ilvD; Dihydroxy-acid dehydratase 2 K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D PDMSB3_0585 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D PDMSB3_0840.1 Putative 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D PDMSB3_1881.1 Putative 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D PDMSB3_2471.1 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D PDMSB3_2646.1 ykpB; Uncharacterized oxidoreductase YkpB K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D PDMSB3_0890 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D PDMSB3_0312 coaX; Type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D PDMSB3_3558 dfp; fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D PDMSB3_0406 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D PDMSB3_3874 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D PDMSB3_3200 acpS; Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D PDMSB3_2994.1 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D PDMSB3_3087.1 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_3685 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_3006 NADPH-dependent glutamate synthase beta chain-like oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D PDMSB3_3005 yeiA; putative oxidoreductase subunit K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D PDMSB3_3003 dht; D-hydantoinase/dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D PDMSB3_0524.1 hyuC; N-carbamoyl-L-amino-acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_2854.1 Amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_3007 hyuC; N-carbamoyl-L-amino-acid hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D PDMSB3_0889 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:pdio00780] D PDMSB3_0369 bioC; Malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D PDMSB3_3351 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PDMSB3_3355 3-oxoacyl-(Acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PDMSB3_3213 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PDMSB3_3352 3-oxoacyl-(Acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PDMSB3_0328.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_0952.1 Putative short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_0991 tsaC; 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1273 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1468 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1612 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1613 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1739 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2226 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2242 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2371.1 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2391.1 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2479.1 Acetoacetyl-CoA reductase/3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3216 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3323.1 putative 3-beta-hydroxycholanate 3-dehydrogenase (NAD(+)) 1 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3335.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3353 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2581 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PDMSB3_3112.1 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PDMSB3_2648 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PDMSB3_3093.1 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PDMSB3_0274 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D PDMSB3_0275 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D PDMSB3_0273 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D PDMSB3_0272 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D PDMSB3_0313 BirA, biotin-(Acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:pdio00785] D PDMSB3_0327 lipB; lipoyl-protein ligase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D PDMSB3_0328 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D PDMSB3_3135.1 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2878 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PDMSB3_4374 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D PDMSB3_2877 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PDMSB3_3136.1 acoC; Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D PDMSB3_1703 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D PDMSB3_1704 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D PDMSB3_4281 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PDMSB3_3317.1 Glycine dehydrogenase (decarboxylating) (glycine cleavage system P1 protein) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D PDMSB3_3318.1 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D PDMSB3_4279 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PDMSB3_4280 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:pdio00790] D PDMSB3_2735.1 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D PDMSB3_0229.1 folE; GTP cyclohydrolase FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D PDMSB3_0495 nudB; dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D PDMSB3_0624.1 FolB domain protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D PDMSB3_4148 FolB domain protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D PDMSB3_0587 2-amino-4-hydroxy-6-hydroxymethyldihydropteridinepyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D PDMSB3_3161 folP; 7,8-dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D PDMSB3_3266 dfrA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D PDMSB3_0175.1 folC; bifunctional folylpolyglutamate synthase and dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D PDMSB3_1414.1 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D PDMSB3_3468 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D PDMSB3_0584 Aminodeoxychorismate synthase, component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D PDMSB3_0116 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D PDMSB3_0633.1 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D PDMSB3_4324 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D PDMSB3_4323 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D PDMSB3_0115 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PDMSB3_0114 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PDMSB3_0479 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D PDMSB3_0041.2 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PDMSB3_3229 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PDMSB3_3693 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D PDMSB3_1915 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D PDMSB3_3269 mogA; molybdochelatase MogA, involved in Moco biosynthesis K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D PDMSB3_1913 Molybdopterin biosynthesis enzyme K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PDMSB3_3231 moeA; Molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PDMSB3_0871.1 Putative MobA-like protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D PDMSB3_3230 mobA; Molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] D PDMSB3_2179 putative MobA-like protein C 00670 One carbon pool by folate [PATH:pdio00670] D PDMSB3_3266 dfrA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D PDMSB3_2884 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D PDMSB3_0625 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_1495.1 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_3554 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D PDMSB3_3751 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D PDMSB3_4279 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PDMSB3_3262 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D PDMSB3_0431 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D PDMSB3_1506.1 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D PDMSB3_4171 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D PDMSB3_4156 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] D PDMSB3_0149 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PDMSB3_4173 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PDMSB3_4281 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D PDMSB3_3317.1 Glycine dehydrogenase (decarboxylating) (glycine cleavage system P1 protein) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D PDMSB3_3318.1 gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_4280 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein D PDMSB3_1490.1 betA; choline dehydrogenase, a flavoprotein K00108 betA; choline dehydrogenase [EC:1.1.99.1] D PDMSB3_1491.1 betB; betaine aldehyde dehydrogenase, NAD-dependent K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:pdio00860] D PDMSB3_2639 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PDMSB3_3948 hemA; glutamyl tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D PDMSB3_2405.1 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PDMSB3_3415 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PDMSB3_4050 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D PDMSB3_0973 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D PDMSB3_4291 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D PDMSB3_1269 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D PDMSB3_3488 hemN; Oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D PDMSB3_3795 conserved membrane protein of unknown function K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D PDMSB3_0576 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D PDMSB3_0974 putative enzyme of heme biosynthesis K13543 hemDX; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D PDMSB3_0854 Uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PDMSB3_1435.1 cobA; Uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PDMSB3_2110 cobA; Uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D PDMSB3_0381 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PDMSB3_0380 conserved membrane protein of unknown function K02259 COX15; heme a synthase [EC:1.17.99.9] D PDMSB3_0859 conserved protein of unknown function K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D PDMSB3_1863.1 cobI; Precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D PDMSB3_1861.1 Cobalamin biosynthesis protein CobG K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D PDMSB3_1864.1 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D PDMSB3_1857.1 cobM; Precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D PDMSB3_1434.1 Cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D PDMSB3_1858.1 cobK; Precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D PDMSB3_1859.1 cbiD; Cobalt-precorrin-5B C(1)-methyltransferase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D PDMSB3_1860.1 cobL; Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D PDMSB3_1862.1 cobH; Precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D PDMSB3_1432.1 cobB; Hydrogenobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D PDMSB3_1438.1 cobN; Aerobic cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D PDMSB3_1811.1 ATPase family protein associated with various cellular activities (AAA) K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D PDMSB3_1036 conserved protein of unknown function K13786 cobR; cob(II)yrinic acid a,c-diamide reductase [EC:1.16.8.-] D PDMSB3_0566 cobO; Cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PDMSB3_1433.1 cobO; Corrinoid adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PDMSB3_0885 cobQ; Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D PDMSB3_0883 cobD; Cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D PDMSB3_3274 cobD; Cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D PDMSB3_0882 cobC; Threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC D PDMSB3_0884 cobP; Bifunctional adenosylcobalamin biosynthesis protein CobP K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D PDMSB3_0879 cobS; Adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D PDMSB3_0878 cobT; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D PDMSB3_0880 putative phosphoglycerate/bisphosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D PDMSB3_1439.1 ChlI component of cobalt chelatase involved in B12 biosynthesis K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D PDMSB3_0200 putative heme iron utilization protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D PDMSB3_1404 bfr; bacterioferritin, iron storage and detoxification protein K03594 bfr; bacterioferritin [EC:1.16.3.1] D PDMSB3_2971 Bacterioferritin (Cytochrome b1) K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pdio00130] D PDMSB3_3187.1 Putative thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D PDMSB3_1196 ubiC; putative chorismate pyruvate-lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D PDMSB3_0559 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D PDMSB3_3473 ubiD; 3-octaprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D PDMSB3_0740.1 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PDMSB3_3952 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PDMSB3_3931 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D PDMSB3_3316 ubiG; bifunctional 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D PDMSB3_3748 2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D PDMSB3_0487 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D PDMSB3_3900 coq; 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 coq7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D PDMSB3_1003.1 NAD(P)H oxidoreductase YRKL / Flavodoxin 2 K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PDMSB3_2436 putative NADPH-quinone reductase (Modulator of drug activity B) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PDMSB3_3075 NAD(P)H dehydrogenase (quinone) K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PDMSB3_4126 fldP; Flavodoxin FldP K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D PDMSB3_0279.1 vllY; Hemolysin VllY K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PDMSB3_4118 vllY; Hemolysin VllY K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:pdio00900] D PDMSB3_0228.1 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D PDMSB3_2587 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D PDMSB3_1983 ispD; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D PDMSB3_0412 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D PDMSB3_1984 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D PDMSB3_2825 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D PDMSB3_3359.1 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D PDMSB3_3543 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_0740.1 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PDMSB3_3952 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PDMSB3_0227.1 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D PDMSB3_3868 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D PDMSB3_2589 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D PDMSB3_3271 Zn-dependent protease with chaperone function K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:pdio00909] D PDMSB3_2935.1 Phytoene/squalene synthetase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] D PDMSB3_3365.1 shc; Squalene--hopene cyclase K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129] C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:pdio00906] D PDMSB3_1994 Phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:pdio00907] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3040 conserved protein of unknown function K13774 atuB; citronellol/citronellal dehydrogenase D PDMSB3_0268 liuE; 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D PDMSB3_0501 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2364.1 atoB; Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D PDMSB3_0618.1 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PDMSB3_1802.1 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D PDMSB3_3810 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:pdio00523] D PDMSB3_0754 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0786 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0753 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PDMSB3_0785 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PDMSB3_0755 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_1345.1 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_1498 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_0756 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PDMSB3_1378 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PDMSB3_0791 dTDP-L-rhamnose 4-epimerase K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25] C 01054 Nonribosomal peptide structures [PATH:pdio01054] D PDMSB3_1477 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D PDMSB3_0753 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PDMSB3_0785 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:pdio00946] D PDMSB3_1046.1 bglB; Beta-glucosidase B K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism D PDMSB3_2216 putative methylxanthine N7-demethylase NdmC K21724 ndmC; 7-methylxanthine demethylase [EC:1.14.13.128] C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:pdio00332] D PDMSB3_3864 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D PDMSB3_3796 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:pdio00261] D PDMSB3_2889.1 mbtH; Protein MbtH K05375 mbtH; MbtH protein D PDMSB3_0853 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D PDMSB3_0852 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D PDMSB3_2654 lysC; Aspartate kinase Ask_LysC K00928 lysC; aspartate kinase [EC:2.7.2.4] D PDMSB3_0167.1 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D PDMSB3_1007.1 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_2833 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3330.1 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3337.1 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3347.1 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3438 Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PDMSB3_3802 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D PDMSB3_1685.1 1-pyrroline-4-hydroxy-2-carboxylate deaminase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:pdio00521] D PDMSB3_0923 glk; putative Glucokinase / HTH-type transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2] D PDMSB3_1590.1 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D PDMSB3_0811 pgm; Phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PDMSB3_2668 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D PDMSB3_3099 putative dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D PDMSB3_3100 idhA; Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D PDMSB3_0754 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0786 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0753 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PDMSB3_0785 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PDMSB3_0755 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_1345.1 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_1498 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D PDMSB3_0756 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D PDMSB3_1378 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D PDMSB3_0923 glk; putative Glucokinase / HTH-type transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:pdio00525] D PDMSB3_0754 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0786 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PDMSB3_0753 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D PDMSB3_0785 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:pdio00401] D PDMSB3_3309 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D PDMSB3_0408 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3310 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3995 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_1388 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_1883.1 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D PDMSB3_3922 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PDMSB3_3923 trpG; bifunctional protein:[Includes: para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase); anthranilate synthase component II] K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D PDMSB3_3217 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D PDMSB3_0328.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_0952.1 Putative short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_0991 tsaC; 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1273 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1468 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1612 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1613 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1739 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2226 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2242 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2371.1 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2391.1 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2479.1 Acetoacetyl-CoA reductase/3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3216 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3323.1 putative 3-beta-hydroxycholanate 3-dehydrogenase (NAD(+)) 1 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3335.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3353 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2648 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PDMSB3_3093.1 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:pdio00998] D PDMSB3_3215 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein D PDMSB3_3363 acpP; Acyl carrier protein 2 K02078 acpP; acyl carrier protein D PDMSB3_3364 Phosphopantetheine-containing protein K02078 acpP; acyl carrier protein D PDMSB3_0865.1 Phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D PDMSB3_0866.1 ppd; Phosphonopyruvate decarboxylase K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82] C 00999 Biosynthesis of various plant secondary metabolites [PATH:pdio00999] D PDMSB3_0149 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PDMSB3_3837 aroE; Shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D PDMSB3_1046.1 bglB; Beta-glucosidase B K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:pdio00362] D PDMSB3_2243.1 benA; Benzoate 1,2-dioxygenase subunit alpha K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D PDMSB3_2244.1 benB; Benzoate 1,2-dioxygenase subunit beta K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D PDMSB3_2245.1 benC; Ferredoxin / Ferredoxin--NAD(+) reductase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D PDMSB3_2246.1 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D PDMSB3_2232 catA; Catechol 1,2-dioxygenase 2 K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D PDMSB3_2233 catB; muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D PDMSB3_2231 catC; Muconolactone Delta-isomerase 2 K03464 catC; muconolactone D-isomerase [EC:5.3.3.4] D PDMSB3_0299 putative hydrolase or acyltransferase of alpha/beta superfamily K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D PDMSB3_2730.1 catD; 3-oxoadipate enol-lactonase 2 K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D PDMSB3_2797.1 Beta-ketoadipate enol-lactone hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D PDMSB3_2733.1 atoD; acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] D PDMSB3_2732.1 atoA; acetyl-CoA:acetoacetyl-CoA transferase, beta subunit K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] D PDMSB3_0501 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2364.1 atoB; Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_0943.1 paaE; beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D PDMSB3_3914 paaE; beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D PDMSB3_1995.1 Putative hydrolase or acyltransferase of alpha/beta superfamily K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] D PDMSB3_0765.1 mhpD; 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D PDMSB3_0767.1 mhpE; 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D PDMSB3_0766.1 mhpF; acetaldehyde-CoA dehydrogenase II, NAD-binding K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D PDMSB3_0276.1 pcaG; Protocatechuate 3,4-dioxygenase alpha chain K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D PDMSB3_0277.1 pcaH; Protocatechuate 3,4-dioxygenase beta chain K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D PDMSB3_2731.1 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D PDMSB3_1924 conserved protein of unknown function K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D PDMSB3_1964.1 Cation/multidrug efflux pump K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D PDMSB3_2178.1 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D PDMSB3_2729.1 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D PDMSB3_0778.1 ligJ; 2-keto-4-carboxy-3-hexenedioate hydratase K10220 ligJ; 4-oxalmesaconate hydratase [EC:4.2.1.83] D PDMSB3_0222 NAD(FAD)-dependent dehydrogenase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2399.1 thcD; Rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2476.1 thcD; Rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_2483.1 camA; Putidaredoxin reductase CamA K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_3295.1 hcaD; 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D PDMSB3_1641.1 Ferredoxin, 2Fe-2S K04755 fdx; ferredoxin, 2Fe-2S D PDMSB3_1661.1 fdx; [2Fe-2S] ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D PDMSB3_2352.1 thcC; Rhodocoxin K04755 fdx; ferredoxin, 2Fe-2S D PDMSB3_2482.1 fdxB; 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D PDMSB3_2860 fdx; [2FE-2S] ferredoxin, electron carrer protein, believed to be involved in assembly of Fe-S clusters K04755 fdx; ferredoxin, 2Fe-2S D PDMSB3_2296 praI; 4-hydroxybenzoate 3-monooxygenase (NAD(P)H) K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D PDMSB3_3187.1 Putative thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D PDMSB3_3016 bclA; Benzoate--CoA ligase K04110 badA; benzoate-CoA ligase [EC:6.2.1.25] D PDMSB3_0500 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_2052 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_3043 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D PDMSB3_0637 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_0107.1 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_1067 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_1352 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_2365.1 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_3068.1 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3010 boxA; Benzoyl-CoA oxygenase component A K15511 boxA; benzoyl-CoA 2,3-epoxidase subunit A [EC:1.14.13.208] D PDMSB3_3011 boxB; Benzoyl-CoA oxygenase component B K15512 boxB; benzoyl-CoA 2,3-epoxidase subunit B [EC:1.14.13.208] D PDMSB3_3015 boxD; 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase K15514 boxD; 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase [EC:1.2.1.77] D PDMSB3_3012 boxC; Benzoyl-CoA-dihydrodiol lyase K15513 boxC; benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44] D PDMSB3_2337 2-keto-4-pentenoate hydratase C 00627 Aminobenzoate degradation [PATH:pdio00627] D PDMSB3_0192 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_0550.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_1745.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2051.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2241 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_0609 nitA; Aliphatic nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_3027 Nitrilase 3 K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_0034.2 acyP; Acylphosphatase 1 K01512 acyP; acylphosphatase [EC:3.6.1.7] D PDMSB3_3353.1 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D PDMSB3_3016 bclA; Benzoate--CoA ligase K04110 badA; benzoate-CoA ligase [EC:6.2.1.25] D PDMSB3_3409 mdlC; Benzoylformate decarboxylase K01576 mdlC; benzoylformate decarboxylase [EC:4.1.1.7] D PDMSB3_0740.1 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PDMSB3_3952 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PDMSB3_3189.1 Putative acid-coenzyme A ligase K08295 abmG; 2-aminobenzoate-CoA ligase [EC:6.2.1.32] D PDMSB3_3182.1 NADH:flavin oxidoreductase K09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40] D PDMSB3_0305.1 tphA2I; Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit alpha 1 K16319 andAc; anthranilate 1,2-dioxygenase large subunit [EC:1.14.12.1] D PDMSB3_0743.1 tphA2I; Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit alpha 1 K16319 andAc; anthranilate 1,2-dioxygenase large subunit [EC:1.14.12.1] D PDMSB3_0306.1 tphA3I; Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit beta 1 K16320 andAd; anthranilate 1,2-dioxygenase small subunit [EC:1.14.12.1] D PDMSB3_0744.1 Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA K16320 andAd; anthranilate 1,2-dioxygenase small subunit [EC:1.14.12.1] D PDMSB3_0226 doxA; Naphthalene 1,2-dioxygenase system, ferredoxin component K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D PDMSB3_3238.1 cnbA; Chloronitrobenzene nitroreductase K28519 phnA; 4-nitrobenzoate reductase [EC:1.7.1.-] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:pdio00364] D PDMSB3_2243.1 benA; Benzoate 1,2-dioxygenase subunit alpha K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D PDMSB3_2244.1 benB; Benzoate 1,2-dioxygenase subunit beta K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D PDMSB3_2245.1 benC; Ferredoxin / Ferredoxin--NAD(+) reductase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D PDMSB3_2246.1 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D PDMSB3_2232 catA; Catechol 1,2-dioxygenase 2 K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D PDMSB3_0193 Dienelactone hydrolase-like enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_0223.1 ysgA; putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_2859.1 Dienelactone hydrolase family K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_3190.1 Dienelactone hydrolase-like enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_2233 catB; muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) K01856 catB; muconate cycloisomerase [EC:5.5.1.1] C 00625 Chloroalkane and chloroalkene degradation [PATH:pdio00625] D PDMSB3_2490 adhA; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_2518 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_3655 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PDMSB3_0340.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0839.1 dhaS; Putative aldehyde dehydrogenase DhaS K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0963.1 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_0992 puuC; NADP/NAD-dependent aldehyde dehydrogenase PuuC K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1704.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2125.1 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2179.1 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_2411 ald; 3-succinoylsemialdehyde-pyridine dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_3018.1 NAD-dependent aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D PDMSB3_1632.1 nifK; Nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D PDMSB3_1634.1 nifH; Nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH D PDMSB3_1633.1 nifD; Nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D PDMSB3_1493.1 fdhA; Glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D PDMSB3_3147.1 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] D PDMSB3_0261 Fluoroacetate dehalogenase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D PDMSB3_2124.1 2-haloalkanoic acid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D PDMSB3_2631 2-haloalkanoic acid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D PDMSB3_3129.1 2-haloalkanoic acid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D PDMSB3_0570.1 protein of unknown function D PDMSB3_0787.1 2-haloalkanoic acid dehalogenase, type II D PDMSB3_3942 Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:pdio00361] D PDMSB3_2232 catA; Catechol 1,2-dioxygenase 2 K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D PDMSB3_0193 Dienelactone hydrolase-like enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_0223.1 ysgA; putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_2859.1 Dienelactone hydrolase family K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_3190.1 Dienelactone hydrolase-like enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_0712.1 pobB; Phenoxybenzoate dioxygenase subunit beta K21607 pcpD; tetrachlorobenzoquinone reductase [EC:1.1.1.404] D PDMSB3_0951.1 putative taurine catabolism dioxygenase K06912 tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase [EC:1.14.11.-] D PDMSB3_0955.1 tfdA; Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase K06912 tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase [EC:1.14.11.-] D PDMSB3_0959.1 tfdA; Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase K06912 tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase [EC:1.14.11.-] D PDMSB3_0971.1 tfdA; Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase K06912 tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase [EC:1.14.11.-] D PDMSB3_2233 catB; muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D PDMSB3_2124.1 2-haloalkanoic acid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D PDMSB3_2631 2-haloalkanoic acid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D PDMSB3_3129.1 2-haloalkanoic acid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D PDMSB3_0261 Fluoroacetate dehalogenase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D PDMSB3_0787.1 2-haloalkanoic acid dehalogenase, type II D PDMSB3_3942 Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED C 00623 Toluene degradation [PATH:pdio00623] D PDMSB3_1733 pchF; 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit K05797 pchF; 4-cresol dehydrogenase (hydroxylating) flavoprotein subunit [EC:1.17.9.1] D PDMSB3_2232 catA; Catechol 1,2-dioxygenase 2 K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D PDMSB3_2233 catB; muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D PDMSB3_0193 Dienelactone hydrolase-like enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_0223.1 ysgA; putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_2859.1 Dienelactone hydrolase family K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D PDMSB3_3190.1 Dienelactone hydrolase-like enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:pdio00622] D PDMSB3_2243.1 benA; Benzoate 1,2-dioxygenase subunit alpha K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D PDMSB3_2244.1 benB; Benzoate 1,2-dioxygenase subunit beta K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D PDMSB3_2245.1 benC; Ferredoxin / Ferredoxin--NAD(+) reductase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D PDMSB3_2246.1 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D PDMSB3_1995.1 Putative hydrolase or acyltransferase of alpha/beta superfamily K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] D PDMSB3_0765.1 mhpD; 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D PDMSB3_0767.1 mhpE; 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D PDMSB3_0766.1 mhpF; acetaldehyde-CoA dehydrogenase II, NAD-binding K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D PDMSB3_2337 2-keto-4-pentenoate hydratase C 00633 Nitrotoluene degradation [PATH:pdio00633] D PDMSB3_0247.2 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D PDMSB3_1089 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D PDMSB3_1781 N-ethylmaleimide reductase (fragment) K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D PDMSB3_1826.1 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D PDMSB3_1847.1 nemA; N-ethylmaleimide reductase, FMN-linked K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D PDMSB3_2557 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D PDMSB3_0226 doxA; Naphthalene 1,2-dioxygenase system, ferredoxin component K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component C 00642 Ethylbenzene degradation [PATH:pdio00642] D PDMSB3_0226 doxA; Naphthalene 1,2-dioxygenase system, ferredoxin component K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D PDMSB3_0501 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2364.1 atoB; Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:pdio00643] D PDMSB3_2486.1 dhaS; Putative aldehyde dehydrogenase DhaS K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D PDMSB3_0641 hmgA; Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D PDMSB3_0403 maiA; putative maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D PDMSB3_0642 Fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D PDMSB3_0302 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D PDMSB3_0192 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_0550.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_1745.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2051.1 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_2241 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K01426 E3.5.1.4; amidase [EC:3.5.1.4] D PDMSB3_0609 nitA; Aliphatic nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_3027 Nitrilase 3 K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D PDMSB3_1995.1 Putative hydrolase or acyltransferase of alpha/beta superfamily K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] D PDMSB3_1763 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D PDMSB3_1762 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D PDMSB3_0546.1 Putative acetamidase/formamidase C 00791 Atrazine degradation [PATH:pdio00791] D PDMSB3_1720.1 Urea carboxylase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D PDMSB3_1738.1 atzF; Allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D PDMSB3_1732.1 Isochorismatase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] D PDMSB3_1734.1 Isochorismatase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] D PDMSB3_1721.1 Urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6] D PDMSB3_0818 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D PDMSB3_0819 ureB; urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D PDMSB3_0820 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:pdio00930] D PDMSB3_1898.1 alkB; Alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D PDMSB3_0958.1 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D PDMSB3_2766.1 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D PDMSB3_2550 fadB; putative enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D PDMSB3_3912 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00363 Bisphenol degradation C 00621 Dioxin degradation [PATH:pdio00621] D PDMSB3_0765.1 mhpD; 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D PDMSB3_0767.1 mhpE; 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D PDMSB3_0766.1 mhpF; acetaldehyde-CoA dehydrogenase II, NAD-binding K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D PDMSB3_2337 2-keto-4-pentenoate hydratase C 00626 Naphthalene degradation [PATH:pdio00626] D PDMSB3_0226 doxA; Naphthalene 1,2-dioxygenase system, ferredoxin component K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D PDMSB3_2490 adhA; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_2518 adhA; putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D PDMSB3_3655 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D PDMSB3_0570.1 protein of unknown function C 00624 Polycyclic aromatic hydrocarbon degradation [PATH:pdio00624] D PDMSB3_0226 doxA; Naphthalene 1,2-dioxygenase system, ferredoxin component K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D PDMSB3_0711.1 Putative phthalate 4,5-dioxygenase oxygenase subunit (OhpA2) K18068 pht3; phthalate 4,5-dioxygenase [EC:1.14.12.7] D PDMSB3_0276.1 pcaG; Protocatechuate 3,4-dioxygenase alpha chain K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D PDMSB3_0277.1 pcaH; Protocatechuate 3,4-dioxygenase beta chain K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation [PATH:pdio00365] D PDMSB3_1602 Choline dehydrogenase-like flavoprotein K16873 hmfH; 5-(hydroxymethyl)furfural/furfural oxidase [EC:1.1.3.47 1.1.3.-] D PDMSB3_1606.1 5-(hydroxymethyl)furfural oxidase K16873 hmfH; 5-(hydroxymethyl)furfural/furfural oxidase [EC:1.1.3.47 1.1.3.-] D PDMSB3_1611 Choline dehydrogenase-like flavoprotein K16873 hmfH; 5-(hydroxymethyl)furfural/furfural oxidase [EC:1.1.3.47 1.1.3.-] D PDMSB3_2270 UbiD family decarboxylase K16874 hmfF; 2,5-furandicarboxylate decarboxylase 1 D PDMSB3_2269 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K16875 hmfG; 2,5-furandicarboxylate decarboxylase 2 D PDMSB3_2265 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K16876 hmfD; 2-furoate---CoA ligase [EC:6.2.1.31] D PDMSB3_2268 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein K16877 hmfA; 2-furoyl-CoA dehydrogenase large subunit [EC:1.3.99.8] D PDMSB3_2267 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein K16878 hmfB; 2-furoyl-CoA dehydrogenase FAD binding subunit [EC:1.3.99.8] D PDMSB3_2266 cutC; Glyceraldehyde dehydrogenase small chain K16879 hmfC; 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit [EC:1.3.99.8] D PDMSB3_2264 Enoyl-CoA hydratase/carnithine racemase K16880 hmfE; 2-oxoglutaroyl-CoA hydrolase C 00984 Steroid degradation [PATH:pdio00984] D PDMSB3_1241.1 Choline dehydrogenase-like flavoprotein K03333 choD; cholesterol oxidase [EC:1.1.3.6] D PDMSB3_0324.1 Putative acyl-CoA transferase/carnitine dehydratase K01796 AMACR; alpha-methylacyl-CoA racemase [EC:5.1.99.4] D PDMSB3_0709.1 Putative acyl-CoA transferase/carnitine dehydratase K01796 AMACR; alpha-methylacyl-CoA racemase [EC:5.1.99.4] D PDMSB3_0501 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2364.1 atoB; Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_0318.1 putative 3-hydroxyacyl-CoA dehydrogenase K28225 scdE; 3-hydroxyl acyl-CoA dehydrogenase [EC:1.1.-.-] C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:pdio03020] D PDMSB3_4088 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PDMSB3_4087 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PDMSB3_4054 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PDMSB3_3387 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D PDMSB3_1925.1 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:pdio03010] D PDMSB3_RRNA1-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA1-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA4-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA6-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA7-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA9-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA2-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA2-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA5-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA5-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA8-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA8-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA3-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA3-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA4-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA6-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA7-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA9-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_3306 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D PDMSB3_2593 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PDMSB3_4074 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PDMSB3_4055 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D PDMSB3_4062 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PDMSB3_1889 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D PDMSB3_4084 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PDMSB3_4065 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PDMSB3_3762 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PDMSB3_4081 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PDMSB3_4056 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PDMSB3_4085 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PDMSB3_4057 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PDMSB3_4066 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PDMSB3_1313 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D PDMSB3_3280 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D PDMSB3_4070 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PDMSB3_1891 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D PDMSB3_4076 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PDMSB3_3608 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D PDMSB3_0232.1 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D PDMSB3_4254 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D PDMSB3_4092 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PDMSB3_4077 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D PDMSB3_4080 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PDMSB3_4079 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D PDMSB3_4067 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PDMSB3_4064 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PDMSB3_1892 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D PDMSB3_4090 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D PDMSB3_4093 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PDMSB3_4089 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D PDMSB3_3763 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PDMSB3_4069 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PDMSB3_4060 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D PDMSB3_4072 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D PDMSB3_4053 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D PDMSB3_4063 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D PDMSB3_3277 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D PDMSB3_3052 rplT; 50S ribosomal protein L20, also posttranslational autoregulator K02887 RP-L20; large subunit ribosomal protein L20 D PDMSB3_3867 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D PDMSB3_4075 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PDMSB3_4078 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PDMSB3_4068 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PDMSB3_0410 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D PDMSB3_3866 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D PDMSB3_3546 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D PDMSB3_4071 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PDMSB3_4061 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D PDMSB3_1927 rpmE; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D PDMSB3_3220 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D PDMSB3_3547 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D PDMSB3_3053 rpmI; 50S ribosomal subunit protein L35 K02916 RP-L35; large subunit ribosomal protein L35 C 00970 Aminoacyl-tRNA biosynthesis [PATH:pdio00970] D PDMSB3_TRNA10 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA2-2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA24 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA3-1 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA46 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA5-2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA53 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA7-2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA30 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA39 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA40 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA55 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA7-1 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA36 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PDMSB3_TRNA37 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PDMSB3_TRNA19 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PDMSB3_TRNA20 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PDMSB3_TRNA22 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PDMSB3_TRNA33 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D PDMSB3_TRNA4-1 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PDMSB3_TRNA21 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PDMSB3_TRNA23 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PDMSB3_TRNA34 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PDMSB3_TRNA35 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PDMSB3_TRNA42 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PDMSB3_TRNA51 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PDMSB3_TRNA15 tRNA-Ser K14226 tRNA-His; tRNA His D PDMSB3_TRNA16 tRNA-His K14226 tRNA-His; tRNA His D PDMSB3_TRNA1-2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA4-2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA47 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA54 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA6-2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA9 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA13 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA17 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA27 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA43 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA8 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA1-1 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PDMSB3_TRNA1-3 Pseudo tRNA K14229 tRNA-Lys; tRNA Lys D PDMSB3_TRNA5-1 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PDMSB3_TRNA14 tRNA-Met K14230 tRNA-Met; tRNA Met D PDMSB3_TRNA26 tRNA-Met K14230 tRNA-Met; tRNA Met D PDMSB3_TRNA44 tRNA-Met K14230 tRNA-Met; tRNA Met D PDMSB3_TRNA2-1 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D PDMSB3_TRNA28 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PDMSB3_TRNA31 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PDMSB3_TRNA45 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PDMSB3_TRNA11 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PDMSB3_TRNA25 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PDMSB3_TRNA41 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PDMSB3_TRNA6-1 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PDMSB3_TRNA38 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PDMSB3_TRNA48 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PDMSB3_TRNA50 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PDMSB3_TRNA49 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D PDMSB3_TRNA52 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D PDMSB3_TRNA18 tRNA-Val K14237 tRNA-Val; tRNA Val D PDMSB3_TRNA29 tRNA-Val K14237 tRNA-Val; tRNA Val D PDMSB3_TRNA3-2 tRNA-Val K14237 tRNA-Val; tRNA Val D PDMSB3_TRNA32 tRNA-Val K14237 tRNA-Val; tRNA Val D PDMSB3_2639 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PDMSB3_0126 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D PDMSB3_3339 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D PDMSB3_0127 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D PDMSB3_0125 gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D PDMSB3_3125 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PDMSB3_3120 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PDMSB3_0494 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PDMSB3_0526 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D PDMSB3_0525 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D PDMSB3_3055 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PDMSB3_0941 serS; seryl-tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PDMSB3_0538.1 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D PDMSB3_2658 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PDMSB3_1515 Glycoside hydrolase, end-alpha-1,4-polygalactosaminidase K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D PDMSB3_0895 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PDMSB3_0107 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D PDMSB3_3096 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PDMSB3_3799 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PDMSB3_3556 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PDMSB3_2857 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PDMSB3_0293 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PDMSB3_3861 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PDMSB3_2824 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PDMSB3_3051 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PDMSB3_3050 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PDMSB3_3759 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PDMSB3_2835 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PDMSB3_3020.1 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes [PATH:pdio03008] D PDMSB3_3204 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D PDMSB3_3270 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D PDMSB3_1052.1 Serine/threonine protein kinase involved in cell cycle control K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:pdio03060] D PDMSB3_4059 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY D PDMSB3_4095 secE; Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D PDMSB3_1317 Protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D PDMSB3_0549 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD D PDMSB3_0548 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF D PDMSB3_0550 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC D PDMSB3_4389 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PDMSB3_3880 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PDMSB3_0364 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB D PDMSB3_3858 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PDMSB3_MISCRN11-1 Bacteria_small_SRP K01983 ffs; signal recognition particle 4.5S RNA D PDMSB3_0404 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein K03110 ftsY; fused signal recognition particle receptor D PDMSB3_3984 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D PDMSB3_3983 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D PDMSB3_3982 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC D PDMSB3_1824 Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D PDMSB3_3205 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89] D PDMSB3_3557 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum [PATH:pdio04141] D PDMSB3_1192 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG D PDMSB3_0258.2 HSP20 family protein K13993 HSP20; HSP20 family protein D PDMSB3_0281.2 conserved protein of unknown function K13993 HSP20; HSP20 family protein D PDMSB3_0670.1 Molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein D PDMSB3_2493 Heat shock protein Hsp20 K13993 HSP20; HSP20 family protein C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:pdio04122] D PDMSB3_1646.1 nifS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_1656.1 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_2865 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_0224.1 sseA; putative 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D PDMSB3_3098 tusA; Sulfur carrier protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PDMSB3_0530 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D PDMSB3_1915 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D PDMSB3_0041.2 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PDMSB3_3229 moaA; GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PDMSB3_1914 moaD; Molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein D PDMSB3_0359 moeB; Molybdopterin-synthase adenylyltransferase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D PDMSB3_1588 moeZ; Sulfur carrier protein CysO adenylyltransferase / Sulfur carrier protein CysO sulfurtransferase K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D PDMSB3_3693 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D PDMSB3_3269 mogA; molybdochelatase MogA, involved in Moco biosynthesis K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D PDMSB3_4010 Thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:pdio03018] D PDMSB3_3862 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D PDMSB3_3228 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12] D PDMSB3_2845 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PDMSB3_1314 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D PDMSB3_1230 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PDMSB3_2148 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PDMSB3_3720 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PDMSB3_1791 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] D PDMSB3_4086 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D PDMSB3_1932 rho; transcription termination factor K03628 rho; transcription termination factor Rho D PDMSB3_0582 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK D PDMSB3_2761 Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PDMSB3_0741 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_1514.1 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_1729 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PDMSB3_2820 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PDMSB3_3152 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D PDMSB3_2741.1 Polyphosphate:ADP phosphotransferase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D PDMSB3_0588 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:pdio03030] D PDMSB3_3378 Exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PDMSB3_1233 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PDMSB3_1936 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PDMSB3_2066 DNA polymerase III, delta'' subunit (fragment) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PDMSB3_3797 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PDMSB3_0863 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PDMSB3_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PDMSB3_1893 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PDMSB3_0234.1 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D PDMSB3_0437 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PDMSB3_2578 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D PDMSB3_0221.1 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] D PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:pdio03410] D PDMSB3_1212 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D PDMSB3_3927 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D PDMSB3_0416 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D PDMSB3_1411.1 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D PDMSB3_0415 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D PDMSB3_2657 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D PDMSB3_4358 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D PDMSB3_4252 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D PDMSB3_0870.1 Uracil-DNA glycosylase family domain protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PDMSB3_2622 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PDMSB3_3022.1 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PDMSB3_0129 Exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] D PDMSB3_0878.1 Exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] D PDMSB3_2897 Exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] D PDMSB3_0221.1 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] D PDMSB3_2855 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:pdio03420] D PDMSB3_1982 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D PDMSB3_0435 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D PDMSB3_1478 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D PDMSB3_3375 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A D PDMSB3_1389 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B D PDMSB3_3193 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D PDMSB3_3094 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PDMSB3_3246 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PDMSB3_0221.1 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] D PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PDMSB3_1925.1 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:pdio03430] D PDMSB3_2800 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D PDMSB3_0594 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D PDMSB3_3094 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PDMSB3_3246 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PDMSB3_3599 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D PDMSB3_0226.1 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D PDMSB3_2855 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PDMSB3_0437 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PDMSB3_1233 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PDMSB3_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PDMSB3_1936 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PDMSB3_3797 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PDMSB3_2066 DNA polymerase III, delta'' subunit (fragment) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PDMSB3_3378 Exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PDMSB3_0863 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:pdio03440] D PDMSB3_2855 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PDMSB3_0437 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PDMSB3_3202 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D PDMSB3_1938 recR; gap repair protein K06187 recR; recombination protein RecR D PDMSB3_3701 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D PDMSB3_0221.1 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] D PDMSB3_3754 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA D PDMSB3_3755 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D PDMSB3_3753 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D PDMSB3_0553 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D PDMSB3_1669 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D PDMSB3_1668 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D PDMSB3_1130 protein of unknown function K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D PDMSB3_1670 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D PDMSB3_1233 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PDMSB3_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PDMSB3_1936 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PDMSB3_3797 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PDMSB3_2066 DNA polymerase III, delta'' subunit (fragment) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PDMSB3_3378 Exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PDMSB3_0863 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PDMSB3_4290 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D PDMSB3_1890 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N C 03450 Non-homologous end-joining [PATH:pdio03450] D PDMSB3_1965 ku; Non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D PDMSB3_1966 ligD; 3'-phosphoesterase / DNA ligase D / DNA repair polymerase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:pdio03250] D PDMSB3_2661 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus and Alphavirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03273 Virion - Lassa virus and SFTS virus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:pdio02010] D PDMSB3_0271 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D PDMSB3_1873 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D PDMSB3_1874 cysT; sulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein D PDMSB3_1875 Sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D PDMSB3_1876 cysA; sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D PDMSB3_0331 tauA; taurine transporter subunit; periplasmic-binding component of ABC superfamily K15551 tauA; taurine transport system substrate-binding protein D PDMSB3_0333 tauC; taurine transporter subunit; membrane component of ABC superfamily K15552 tauC; taurine transport system permease protein D PDMSB3_0332 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D PDMSB3_0003.1 ssuA; Putative aliphatic sulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0413.1 Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0661.1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0771.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1382 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1445 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1504 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1940 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2161 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2166 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2171 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2923.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0411.1 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein D PDMSB3_0659.1 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1503 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1845 ssuC; alkanesulfonate transport protein (ABC superfamily, membrane) K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1942 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2159 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2168 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2925.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_0412.1 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_0660.1 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1502 ssuB; Aliphatic sulfonates import ATP-binding protein SsuB 2 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1846 ssuB; Aliphatic sulfonates import ATP-binding protein SsuB 1 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1941 conserved protein of unknown function K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2160 tauB; Taurine import ATP-binding protein TauB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2167 nrtD; Nitrate transport ATP-binding protein NrtD K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2175 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2924.1 Putative ATP-binding protein BruAb2_1123 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_0205.1 modA; molybdate transporter subunit; periplasmic-binding component of ABC superfamily K02020 modA; molybdate transport system substrate-binding protein D PDMSB3_1619.1 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) K02020 modA; molybdate transport system substrate-binding protein D PDMSB3_1916.1 ABC-type molybdate transport system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein D PDMSB3_0204.1 modB; molybdate transporter subunit; membrane component of ABC superfamily K02018 modB; molybdate transport system permease protein D PDMSB3_1620.1 modB; molybdate transporter subunit; membrane component of ABC superfamily K02018 modB; molybdate transport system permease protein D PDMSB3_1917.1 ABC-type spermidine/putrescine transport system, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D PDMSB3_0203.1 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D PDMSB3_1618.1 ABC-type sulfate/molybdate transport system, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D PDMSB3_1220.1 Ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D PDMSB3_2069.1 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein D PDMSB3_1219.1 fbpB; Fe(3+)-transport system permease protein SfuB K02011 afuB; iron(III) transport system permease protein D PDMSB3_2070.1 ABC Fe3+ siderophore transporter, inner membrane subunit K02011 afuB; iron(III) transport system permease protein D PDMSB3_1218.1 fbpC; Fe(3+) ions import ATP-binding protein FbpC 1 K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PDMSB3_2071.1 fbpC; Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PDMSB3_2215.1 potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily K11073 potF; putrescine transport system substrate-binding protein D PDMSB3_2404 potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily K11073 potF; putrescine transport system substrate-binding protein D PDMSB3_2218.1 potI; putrescine transporter subunit: membrane component of ABC superfamily K11074 potI; putrescine transport system permease protein D PDMSB3_2401 potI; putrescine transporter subunit: membrane component of ABC superfamily K11074 potI; putrescine transport system permease protein D PDMSB3_2217.1 potH; putrescine transporter subunit: membrane component of ABC superfamily K11075 potH; putrescine transport system permease protein D PDMSB3_2402 potH; putrescine transporter subunit: membrane component of ABC superfamily K11075 potH; putrescine transport system permease protein D PDMSB3_2216.1 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D PDMSB3_2403 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D PDMSB3_1175.1 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein K11081 phnS; 2-aminoethylphosphonate transport system substrate-binding protein D PDMSB3_1178.1 2-aminoethylphosphonate ABC transporter permease protein II (TC 3.A.1.9.1) K11082 phnV; 2-aminoethylphosphonate transport system permease protein D PDMSB3_1177.1 2-aminoethylphosphonate ABC transporter permease protein I (TC 3.A.1.9.1) K11083 phnU; 2-aminoethylphosphonate transport system permease protein D PDMSB3_1176.1 potA; Spermidine/putrescine import ATP-binding protein PotA K11084 phnT; 2-aminoethylphosphonate transport system ATP-binding protein D PDMSB3_1479.1 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_1505.1 ABC-type proline/glycine betaine transport system, periplasmic component K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_1509.1 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_2562.1 Choline ABC transporter, periplasmic binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_2774.1 ABC-type proline/glycine betaine transport system, periplasmic component K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_1477.1 gbuB; Glycine betaine/carnitine transport permease protein GbuB K02001 proW; glycine betaine/proline transport system permease protein D PDMSB3_2775.1 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) K02001 proW; glycine betaine/proline transport system permease protein D PDMSB3_1476.1 proV; glycine betaine transporter subunit; ATP-binding compoent of ABC superfamily K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D PDMSB3_2776.1 proV; glycine betaine transporter subunit; ATP-binding compoent of ABC superfamily K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D PDMSB3_0047.1 yehW; putative transporter subunit: permease component of ABC superfamily transporter K05846 opuBD; osmoprotectant transport system permease protein D PDMSB3_0048.1 osmV; Osmoprotectant import ATP-binding protein OsmV K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D PDMSB3_3644 malK; fused maltose transport subunit, ATP-binding component of ABC superfamily; regulatory protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_0929 msmX; Maltodextrin import ATP-binding protein MsmX K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_1050.1 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_3002.1 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_3338.1 malK; Trehalose/maltose import ATP-binding protein MalK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_3648 ABC-type sugar transport system, periplasmic component K10227 smoE; polyol transport system substrate-binding protein D PDMSB3_3647 Permease component of ABC-type sugar transporter K10228 smoF; polyol transport system permease protein D PDMSB3_3646 ABC-type sugar transport system, permease component K10229 smoG; polyol transport system permease protein D PDMSB3_3361.1 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein D PDMSB3_4003 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein D PDMSB3_0317 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D PDMSB3_4005 yrbD; toluene transporter subunit: membrane component of ABC superfamily K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D PDMSB3_0315 conserved membrane protein of unknown function K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PDMSB3_3445 conserved protein of unknown function K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PDMSB3_4006 yrbE; toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PDMSB3_4002 conserved protein of unknown function K07122 mlaB; phospholipid transport system transporter-binding protein D PDMSB3_0316 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D PDMSB3_4007 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D PDMSB3_1737.1 Putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_1743.1 Putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_2217 Purine-binding protein BAB2_0673 K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_2415 Purine-binding protein BAB2_0673 K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_2936 Purine-binding protein BAB2_0673 K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_1736.1 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein D PDMSB3_1741.1 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein D PDMSB3_2417 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein D PDMSB3_1735.1 Putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein D PDMSB3_1740.1 Putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein D PDMSB3_2416 tsgC; putative glucose ABC transporter permease protein TsgC13 K23536 nupC; general nucleoside transport system permease protein D PDMSB3_1733.1 ATPase component of uncharacterized ABC-type transporter K23537 nupA; general nucleoside transport system ATP-binding protein D PDMSB3_1742.1 yufO; Uncharacterized ABC transporter ATP-binding protein YufO K23537 nupA; general nucleoside transport system ATP-binding protein D PDMSB3_2418 putative sugar transport protein (ABC superfamily atp_bind) K23537 nupA; general nucleoside transport system ATP-binding protein D PDMSB3_0926 putative sugar-binding periplasmic protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D PDMSB3_1047.1 ABC-type sugar transport system, periplasmic component K17315 gtsA; glucose/mannose transport system substrate-binding protein D PDMSB3_2140 putative sugar-binding periplasmic protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D PDMSB3_0927 Permease component of ABC-type sugar transporter K17316 gtsB; glucose/mannose transport system permease protein D PDMSB3_1048.1 Permease of ABC sugar transporter K17316 gtsB; glucose/mannose transport system permease protein D PDMSB3_0928 ABC-type sugar transport system, permease component K17317 gtsC; glucose/mannose transport system permease protein D PDMSB3_1049.1 ABC-type sugar transport system, permease component K17317 gtsC; glucose/mannose transport system permease protein D PDMSB3_0085.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_0842 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1038 Ribose transport system substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1046 Ribose transport system substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1708.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1993.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2345 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2802.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2829.1 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2849.1 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_0841 Monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D PDMSB3_1048 Ribose transport system permease protein K10440 rbsC; ribose transport system permease protein D PDMSB3_1049 Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K10440 rbsC; ribose transport system permease protein D PDMSB3_1707.1 rbsC; D-ribose transporter subunit; membrane component of ABC superfamily K10440 rbsC; ribose transport system permease protein D PDMSB3_1991.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K10440 rbsC; ribose transport system permease protein D PDMSB3_2343 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K10440 rbsC; ribose transport system permease protein D PDMSB3_2800.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K10440 rbsC; ribose transport system permease protein D PDMSB3_2801.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K10440 rbsC; ribose transport system permease protein D PDMSB3_2826.1 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) K10440 rbsC; ribose transport system permease protein D PDMSB3_0840 rbsA; fused D-ribose transporter subunits of ABC superfamily: ATP-binding components K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_1047 rbsA; Ribose import ATP-binding protein RbsA 1 K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_1706.1 rbsA; Ribose import ATP-binding protein RbsA 2 K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_1992.1 ABC-type sugar transport system, ATPase component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_2344 putative ribose/galactose/methyl galactoside import ATP-binding protein 1 K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_2799.1 ABC-type sugar transport system, ATPase component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_2828.1 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_3828 araF; L-arabinose transporter subunit; periplasmic-binding component of ABC superfamily K10537 araF; L-arabinose transport system substrate-binding protein D PDMSB3_3826 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K10538 araH; L-arabinose transport system permease protein D PDMSB3_3827 araG; fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D PDMSB3_0183 ytfQ; putative sugar transporter subunit: periplasmic-binding component of ABC superfamily K23508 ytfQ; galactofuranose transport system substrate-binding protein D PDMSB3_0180 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K23509 ytfT; galactofuranose transport system permease protein D PDMSB3_0181 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K23509 ytfT; galactofuranose transport system permease protein D PDMSB3_0182 ytfR; putative sugar transporter subunit: ATP-binding component of ABC superfamily K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D PDMSB3_0433.1 xylF; D-xylose transporter subunit; periplasmic-binding component of ABC superfamily K10543 xylF; D-xylose transport system substrate-binding protein D PDMSB3_2692.1 ABC-type xylose transport system, periplasmic component K10543 xylF; D-xylose transport system substrate-binding protein D PDMSB3_0435.1 xylH; D-xylose transporter subunit; membrane component of ABC superfamily K10544 xylH; D-xylose transport system permease protein D PDMSB3_2694.1 ABC-type xylose transport system, permease component K10544 xylH; D-xylose transport system permease protein D PDMSB3_0434.1 xylG; fused D-xylose transporter subunits of ABC superfamily: ATP-binding components K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D PDMSB3_2693.1 frcA; Fructose import ATP-binding protein FrcA K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D PDMSB3_2291.1 frcA; Fructose import ATP-binding protein FrcA K10554 frcA; fructose transport system ATP-binding protein D PDMSB3_2074.1 Predicted L-rhamnose ABC transporter, substrate-binding component K10559 rhaS; rhamnose transport system substrate-binding protein D PDMSB3_2076.1 Predicted L-rhamnose ABC transporter, transmembrane component 2 K10560 rhaP; rhamnose transport system permease protein D PDMSB3_2075.1 Predicted L-rhamnose ABC transporter, transmembrane component 1 K10561 rhaQ; rhamnose transport system permease protein D PDMSB3_2077.1 rbsA; Ribose import ATP-binding protein RbsA K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_3935 ugpB; glycerol-3-phosphate transporter subunit; periplasmic-binding component of ABC superfamily K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D PDMSB3_3936 ugpA; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D PDMSB3_3937 ugpE; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D PDMSB3_3938 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D PDMSB3_0030.2 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_0286.1 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_0291.1 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_3159 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_0029.2 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein D PDMSB3_3158 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein D PDMSB3_0028.2 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein D PDMSB3_3157 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein D PDMSB3_0027.2 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D PDMSB3_3156 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D PDMSB3_2552.1 phnD; phosphonate/organophosphate ester transporter subunit; periplasmic binding component of ABC superfamily K02044 phnD; phosphonate transport system substrate-binding protein D PDMSB3_2553.1 phnE; Phosphonate transport system permease protein PhnE K02042 phnE; phosphonate transport system permease protein D PDMSB3_2551.1 phnC; phosphonate/organophosphate ester transporter subunit; ATP-binding component of ABC superfamily K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D PDMSB3_0059 hisJ; histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_0417.1 argT; lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_0918.1 argT; lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_1575 hisJ; histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_3253.1 argT; lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_1140 hisM; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10015 hisM; histidine transport system permease protein D PDMSB3_1565 hisM; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10015 hisM; histidine transport system permease protein D PDMSB3_1141 hisQ; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10016 hisQ; histidine transport system permease protein D PDMSB3_1564 hisQ; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10016 hisQ; histidine transport system permease protein D PDMSB3_1139 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_1566 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_3773 gltI; glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein D PDMSB3_3771 gltK; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein D PDMSB3_3772 gltJ; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein D PDMSB3_3770 gltL; glutamate/aspartate transport protein (ABC superfamily, atp_bind) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_1228.1 nocT; Nopaline-binding periplasmic protein K10018 occT; octopine/nopaline transport system substrate-binding protein D PDMSB3_1230.1 nocM; Nopaline transport system permease protein NocM K10019 occM; octopine/nopaline transport system permease protein D PDMSB3_1229.1 occQ; Octopine transport system permease protein OccQ K10020 occQ; octopine/nopaline transport system permease protein D PDMSB3_1231.1 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10021 occP; octopine/nopaline transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_1826 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein D PDMSB3_3002 tcyA; L-cystine-binding protein TcyA K02424 tcyA; L-cystine transport system substrate-binding protein D PDMSB3_1825 yecS; putative transporter subunit: permease component of ABC superfamily transporter K10009 tcyB; L-cystine transport system permease protein D PDMSB3_3001 yecS; putative transporter subunit: permease component of ABC superfamily transporter K10009 tcyB; L-cystine transport system permease protein D PDMSB3_3000 yecC; putative transporter subunit: ATP-binding component of ABC superfamily transporter K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_3324.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K23061 lhpP; hydroxyproline transporter system substrate-binding protein D PDMSB3_0196 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0304 ABC-type branched-chain amino acid transport system, periplasmic component (fragment) K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0519.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0547.1 amiC; Aliphatic amidase expression-regulating protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0605 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0806 Amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0847 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1312 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1549 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1764 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_2090.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_2710.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3031.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3433 conserved exported protein of unknown function K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3542 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4285 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4311 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4312 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4315 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0520.1 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_0805 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_1761 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_2716.1 putative permease component of branched-chain amino acid transport system K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3033.1 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3113 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3432 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3541 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_4310 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_4314 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_0521.1 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_0804 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1760 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3032.1 branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3112 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3431 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3540 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_4309 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4313 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_0522.1 braF; High-affinity branched-chain amino acid transport ATP-binding protein BraF K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1759 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_2715.1 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3034.1 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3111 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3429 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3539 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4317 braF; High-affinity branched-chain amino acid transport ATP-binding protein BraF K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_0523.1 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_0803 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1758 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_2714.1 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3030.1 braG; High-affinity branched-chain amino acid transport ATP-binding protein BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3110 ABC-type branched-chain amino acid transport system, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3430 ABC-type branched-chain amino acid transport system, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3538 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4308 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4316 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_0385 metQ; DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_0916.1 metQ; DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_1443 metQ; putative D-methionine-binding lipoprotein MetQ K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_1522.1 Methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_1532.1 Lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_2535.1 Lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_3289 metQ; DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_2533.1 metI; DL-methionine transporter subunit; membrane component protein of ABC superfamily K02072 metI; D-methionine transport system permease protein D PDMSB3_3290 metI; DL-methionine transporter subunit; membrane component protein of ABC superfamily K02072 metI; D-methionine transport system permease protein D PDMSB3_2534.1 metN; DL-methionine transporter subunit; ATP-binding component of ABC superfamily K02071 metN; D-methionine transport system ATP-binding protein D PDMSB3_3291 metN; DL-methionine transporter subunit; ATP-binding component of ABC superfamily K02071 metN; D-methionine transport system ATP-binding protein D PDMSB3_0541.1 Urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein D PDMSB3_0831 putative branched-chain amino acid transport protein (ABC superfamily, peri_bind) K11959 urtA; urea transport system substrate-binding protein D PDMSB3_1377.1 Urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein D PDMSB3_0542.1 Urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D PDMSB3_0830 Amino acid/amide ABC transporter membrane protein 1, HAAT family K11960 urtB; urea transport system permease protein D PDMSB3_1378.1 Urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D PDMSB3_0543.1 Urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D PDMSB3_0829 Urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D PDMSB3_1379.1 Urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D PDMSB3_0544.1 Urea ABC transporter, ATPase protein UrtD K11962 urtD; urea transport system ATP-binding protein D PDMSB3_0828 ABC branched chain amino acid family transporter, ATPase subunit K11962 urtD; urea transport system ATP-binding protein D PDMSB3_1380.1 Urea ABC transporter, ATPase protein UrtD K11962 urtD; urea transport system ATP-binding protein D PDMSB3_0545.1 braG; High-affinity branched-chain amino acid transport ATP-binding protein BraG K11963 urtE; urea transport system ATP-binding protein D PDMSB3_0827 putative branched-chain amino acid transport protein (ABC superfamily, ATP_bind) K11963 urtE; urea transport system ATP-binding protein D PDMSB3_1381.1 Urea ABC transporter, ATPase protein UrtE K11963 urtE; urea transport system ATP-binding protein D PDMSB3_2630.1 oppA; oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein D PDMSB3_2631.1 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein D PDMSB3_2632.1 oppC; oligopeptide transporter subunit; membrane component of ABC superfamily K15582 oppC; oligopeptide transport system permease protein D PDMSB3_2633.1 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein D PDMSB3_2634.1 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K10823 oppF; oligopeptide transport system ATP-binding protein D PDMSB3_0288 dppA; Periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_4169 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_4170 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_4168 dppB; dipeptide transporter; membrane component of ABC superfamily K12369 dppB; dipeptide transport system permease protein D PDMSB3_4167 dppC; dipeptide transporter; membrane component of ABC superfamily K12370 dppC; dipeptide transport system permease protein D PDMSB3_4166 dppD; dipeptide transporter; ATP-binding component of ABC superfamily K12371 dppD; dipeptide transport system ATP-binding protein D PDMSB3_4165 dppF; dipeptide transporter; ATP-binding component of ABC superfamily K12372 dppF; dipeptide transport system ATP-binding protein D PDMSB3_3527 yliB; putative peptide transporter subunit: periplasmic-binding component of ABC superfamily K13889 gsiB; glutathione transport system substrate-binding protein D PDMSB3_3526 yliC; putative peptide transporter permease subunit: membrane component of ABC superfamily K13890 gsiC; glutathione transport system permease protein D PDMSB3_3525 yliD; putative peptide transporter permease subunit: membrane component of ABC superfamily K13891 gsiD; glutathione transport system permease protein D PDMSB3_3528 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K13892 gsiA; glutathione transport system ATP-binding protein D PDMSB3_1487 ABC-type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein D PDMSB3_2646 ABC-type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein D PDMSB3_1488 yejB; putative oligopeptide transporter subunit; permease component of ABC superfamily K13894 yejB; microcin C transport system permease protein D PDMSB3_2645 yejB; putative oligopeptide transporter subunit; permease component of ABC superfamily K13894 yejB; microcin C transport system permease protein D PDMSB3_1489 yejE; putative oligopeptide transporter subunit; permease component of ABC superfamily transporter K13895 yejE; microcin C transport system permease protein D PDMSB3_2644 yejE; putative oligopeptide transporter subunit; permease component of ABC superfamily transporter K13895 yejE; microcin C transport system permease protein D PDMSB3_1490 yejF; putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components K13896 yejF; microcin C transport system ATP-binding protein D PDMSB3_2643 yejF; putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components K13896 yejF; microcin C transport system ATP-binding protein D PDMSB3_2540 ABC-type Fe3+-hydroxamate transport system, periplasmic component K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D PDMSB3_2884.1 ABC-type Fe3+-hydroxamate transport system, periplasmic component K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D PDMSB3_2541 fhuB; fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components K23228 fhuB; ferric hydroxamate transport system permease protein D PDMSB3_2886.1 Ferrichrome transport system permease protein fhuB (TC 3.A.1.14.3) K23228 fhuB; ferric hydroxamate transport system permease protein D PDMSB3_2539 fhuC; iron-hydroxamate transporter subunit; ATP-binding component of ABC superfamily K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D PDMSB3_2887.1 fepC; iron-enterobactin transporter subunit; ATP-binding component of ABC superfamily K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D PDMSB3_0026.3 bexC; Capsule polysaccharide export inner-membrane protein BexC K10107 kpsE; capsular polysaccharide transport system permease protein D PDMSB3_0025.3 Sugar ABC transporter permease K09688 kpsM; capsular polysaccharide transport system permease protein D PDMSB3_0024.3 ctrD; Capsule polysaccharide export ATP-binding protein CtrD K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D PDMSB3_0759 Transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein D PDMSB3_2727.1 Transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein D PDMSB3_0762 ABC transporter related K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D PDMSB3_2726.1 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D PDMSB3_1868 nodJ; Nodulation protein J K09694 nodJ; lipooligosaccharide transport system permease protein D PDMSB3_1869 nodI; Nod factor export ATP-binding protein I K09695 nodI; lipooligosaccharide transport system ATP-binding protein D PDMSB3_2852 lolC; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E_F; lipoprotein-releasing system permease protein D PDMSB3_2851 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D PDMSB3_0861 putative permease K07091 lptF; lipopolysaccharide export system permease protein D PDMSB3_0860 Membrane protein, YjgP/YjgQ like protein K11720 lptG; lipopolysaccharide export system permease protein D PDMSB3_0423 lptB; putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D PDMSB3_1235 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D PDMSB3_2120 apxIB; Toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB D PDMSB3_2945.1 ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB D PDMSB3_2657.1 ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D PDMSB3_0510 atm; ATM1-type heavy metal exporter K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D PDMSB3_2542 Cyclic peptide transporter K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D PDMSB3_2883.1 ABC-type siderophore export system, fused ATPase and permease components K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D PDMSB3_4012 ABC-type uncharacterized transport system, permease and ATPase component K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:pdio02060] D PDMSB3_0358 phbI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D PDMSB3_0357 phbH; Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D PDMSB3_3117.1 protein of unknown function K02784 ptsH; phosphocarrier protein HPr D PDMSB3_0391 nagE; N-acetylglucosamine permease IIC component / N-acetylglucosamine-specific phosphotransferase enzyme IIB component / N-acetylglucosamine-specific phosphotransferase enzyme IIA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D PDMSB3_0356 Phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D PDMSB3_0390 fruB; Phosphoenolpyruvate-protein phosphotransferase / Phosphocarrier protein HPr / PTS system fructose-specific EIIA component K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D PDMSB3_0420 ptsN; Phosphotransferase enzyme IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:pdio03070] D PDMSB3_0993.1 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2118 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2656.1 Type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D PDMSB3_2119 Type I secretion membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D D PDMSB3_2948.1 Multidrug resistance efflux pump K11003 hlyD; membrane fusion protein, hemolysin D D PDMSB3_2120 apxIB; Toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB D PDMSB3_2945.1 ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB D PDMSB3_1410 hrpA; Type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C D PDMSB3_1416 hrcJ; type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J D PDMSB3_1420 hrcR; Putative hypersensitivity response secretion protein HrcR, type III secretion system K03226 yscR; type III secretion protein R D PDMSB3_1421 hrcS; Type III secretion protein HrcS K03227 yscS; type III secretion protein S D PDMSB3_1422 hrcT; putative type III secretion system innermembrane protein, HcrT/YscT-like K03228 yscT; type III secretion protein T D PDMSB3_1423 hrcU; Putative type III secretion system protein HrcU K03229 yscU; type III secretion protein U D PDMSB3_1424 hrcV; Hypersensitivity response secretion protein hrcV, Type III secretory pathway component K03230 yscV; type III secretion protein V D PDMSB3_1425 hrcN; Putative type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D PDMSB3_1419 hrcQb; Putative type III secretory pathway protein HrcQb, FliN like K03225 yscQ; type III secretion protein Q D PDMSB3_1418 Flagellar biosynthesis/type III secretory pathway protein K03223 yscL; type III secretion protein L D PDMSB3_4339 General secretion pathway protein D K02453 gspD; general secretion pathway protein D D PDMSB3_4342 putative general secretory pathway protein C K02452 gspC; general secretion pathway protein C D PDMSB3_4341 xcpS; Type II secretion system protein F K02455 gspF; general secretion pathway protein F D PDMSB3_4343 gspG; pseudopilin, cryptic, general secretion pathway K02456 gspG; general secretion pathway protein G D PDMSB3_4344 General secretion pathway protein H K02457 gspH; general secretion pathway protein H D PDMSB3_4345 General secretion pathway protein I K02458 gspI; general secretion pathway protein I D PDMSB3_4346 Prepilin-type N-terminal cleavage/methylation domain-containing protein K02459 gspJ; general secretion pathway protein J D PDMSB3_4347 Type II secretory pathway, component PulK K02460 gspK; general secretion pathway protein K D PDMSB3_4348 General secretion pathway protein L K02461 gspL; general secretion pathway protein L D PDMSB3_4349 Type II secretory pathway, component PulM K02462 gspM; general secretion pathway protein M D PDMSB3_4340 gspE; general secretory pathway component, cryptic K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D PDMSB3_0549 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD D PDMSB3_0548 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF D PDMSB3_4095 secE; Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D PDMSB3_1317 Protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D PDMSB3_4059 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY D PDMSB3_0550 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC D PDMSB3_4389 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PDMSB3_3880 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PDMSB3_0404 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein K03110 ftsY; fused signal recognition particle receptor D PDMSB3_0364 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB D PDMSB3_3858 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PDMSB3_3984 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D PDMSB3_3983 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D PDMSB3_3982 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC D PDMSB3_0013 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D PDMSB3_0479.1 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D PDMSB3_2892 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D PDMSB3_1309.1 Putative cytoplasmic protein USSDB7A K11903 hcp; type VI secretion system secreted protein Hcp D PDMSB3_1868.1 hcp; Protein hcp1 K11903 hcp; type VI secretion system secreted protein Hcp D PDMSB3_2252 hcp; Protein hcp1 K11903 hcp; type VI secretion system secreted protein Hcp D PDMSB3_1304.1 PUTATIVE TRANSMEMBRANE PROTEIN K11906 vasD; type VI secretion system protein VasD D PDMSB3_2253 Type VI secretion lipoprotein, VC_A0113 family K11906 vasD; type VI secretion system protein VasD D PDMSB3_1317.1 Type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL D PDMSB3_2256 Type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL D PDMSB3_1302.1 putative transmembrane protein K11892 impK; type VI secretion system protein ImpK D PDMSB3_2255 Type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK D PDMSB3_1313.1 clpV; Protein ClpV1 K11907 vasG; type VI secretion system protein VasG D PDMSB3_2247 clpB; Chaperone protein ClpB K11907 vasG; type VI secretion system protein VasG B B 09132 Signal transduction C 02020 Two-component system [PATH:pdio02020] D PDMSB3_3153 Phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D PDMSB3_0024.2 phoB; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D PDMSB3_3154 phoB; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D PDMSB3_0030.2 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_0286.1 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_0291.1 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_3159 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_1590 DMT(Drug/metabolite transporter) superfamily permease K07790 pagO; putative membrane protein PagO D PDMSB3_1071.1 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_1145 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_1987 putative oxidative stress resistance periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_4023 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_0032.1 ompR; Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_1070.1 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_1144 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_1988 ompR; two-component response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_4016 ompR; Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_4022 ompR; Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_3208 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107] D PDMSB3_3670 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107] D PDMSB3_1150.1 mdtA; multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system D PDMSB3_1594 mdtA; multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system D PDMSB3_1149.1 mdtB; multidrug efflux system, subunit B K07788 mdtB; multidrug efflux pump D PDMSB3_1593 mdtB; multidrug transport protein (RND family) K07788 mdtB; multidrug efflux pump D PDMSB3_1148.1 mdtC; multidrug efflux system, subunit C K07789 mdtC; multidrug efflux pump D PDMSB3_1592 mdtC; multidrug efflux system, subunit C K07789 mdtC; multidrug efflux pump D PDMSB3_1061.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1330.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1525 irlS; Sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1715.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_2682.1 irlS; Sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1060.1 yedW; DNA-binding response regulator in two-component system with YedV K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1329.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1526 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1716.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_2683.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_2276 Signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PDMSB3_2275 qseB; DNA-binding response regulator in two-component regulatory system with QseC K07666 qseB; two-component system, OmpR family, response regulator QseB D PDMSB3_2529.1 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD D PDMSB3_4240 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD D PDMSB3_2530.1 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC D PDMSB3_4239 protein of unknown function K02402 flhC; flagellar transcriptional activator FlhC D PDMSB3_0069.3 Flagellin K02406 fliC; flagellin D PDMSB3_4258 fliC; A-type flagellin K02406 fliC; flagellin D PDMSB3_4220 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA D PDMSB3_0882.1 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_2279.1 Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA D PDMSB3_4238 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_1282 kdpD; fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein; sensory histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D PDMSB3_1141.1 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PDMSB3_1283 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PDMSB3_1138.1 kdpA; potassium translocating ATPase, subunit A K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D PDMSB3_1279 kdpA; potassium translocating ATPase, subunit A K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D PDMSB3_1139.1 kdpB; potassium translocating ATPase, subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D PDMSB3_1280 kdpB; potassium translocating ATPase, subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D PDMSB3_1140.1 kdpC; potassium translocating ATPase, subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit D PDMSB3_1281 kdpC; potassium translocating ATPase, subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit D PDMSB3_2067.1 Signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PDMSB3_2921.1 Signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PDMSB3_2068.1 qseB; DNA-binding response regulator in two-component regulatory system with QseC K07774 tctD; two-component system, OmpR family, response regulator TctD D PDMSB3_0967.1 Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region K07793 tctA; putative tricarboxylic transport membrane protein D PDMSB3_0966.1 Tripartite tricarboxylate transporter TctB family K07794 tctB; putative tricarboxylic transport membrane protein D PDMSB3_0380 conserved membrane protein of unknown function K02259 COX15; heme a synthase [EC:1.17.99.9] D PDMSB3_0001 chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator (fragment) K02313 dnaA; chromosomal replication initiator protein D PDMSB3_2304 conserved membrane protein of unknown function K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D PDMSB3_1278.1 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PDMSB3_0151.1 Citrate lyase beta chain K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D PDMSB3_0452 Citrate lyase beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D PDMSB3_0491.1 Citrate lyase beta chain K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D PDMSB3_1756 Citrate lyase beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D PDMSB3_2165.1 Citrate lyase beta chain K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D PDMSB3_0627.1 Triphosphoribosyl-dephospho-CoA synthetase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D PDMSB3_0041 Nitrate/nitrite transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D PDMSB3_0295.1 Arabinose efflux permease family protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D PDMSB3_0837.1 Nitrate/nitrite transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D PDMSB3_2061.1 Sugar phosphate permease K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D PDMSB3_0059.1 Signal transduction histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D PDMSB3_3449 Signal transduction histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D PDMSB3_0463 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_0465 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_3451 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_3453 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_4124 rcsB; Transcriptional regulatory protein RcsB K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_0176 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D PDMSB3_0594.1 Methanol utilization control regulatory protein MoxX K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D PDMSB3_0125.1 bvgA; putative Virulence factors positive transcription regulator BvgA K07690 evgA; two-component system, NarL family, response regulator EvgA D PDMSB3_0143.1 Putative transcriptional regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D PDMSB3_1489.1 ampC; Beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D PDMSB3_3106.1 Sigma-fimbriae tip adhesin K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PDMSB3_3109.1 Putative secreted protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PDMSB3_3107.1 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein D PDMSB3_0078.1 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein D PDMSB3_3108.1 Sigma-fimbriae usher protein K07347 fimD; outer membrane usher protein D PDMSB3_3456 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein D PDMSB3_0135.1 conserved protein of unknown function K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_0139.1 conserved protein of unknown function K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_1712 Flp pilus assembly protein, pilin Flp K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_2265.1 Flp pilus assembly protein, pilin Flp K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_0134.1 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_1715 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_2262.1 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_0133.1 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_1716 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_2261.1 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_1718 putative pilus assembly protein, CpaE-like protein K02282 cpaE; pilus assembly protein CpaE D PDMSB3_1919.1 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE D PDMSB3_2259.1 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE D PDMSB3_0132.1 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_1719 putative type II/IV secretion ATPase protein, TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_2258.1 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_0131.1 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B D PDMSB3_1720 putative tight adherence TadB related transmembrane protein K12510 tadB; tight adherence protein B D PDMSB3_2257.1 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B D PDMSB3_0130.1 Type II/IV secretion system protein TadC, associated with Flp pilus assembly K12511 tadC; tight adherence protein C D PDMSB3_1721 putative tight adherence TadC related transmembrane protein K12511 tadC; tight adherence protein C D PDMSB3_2256.1 Type II/IV secretion system protein TadC, associated with Flp pilus assembly K12511 tadC; tight adherence protein C D PDMSB3_1722 putative lipoprotein transmembrane K27079 tadD; tight adherence protein D D PDMSB3_1724 Predicted membrane protein K27080 tadG; tight adherence protein G D PDMSB3_2596 glnD; [Protein-PII] uridylyltransferase / [Protein-PII]-UMP uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D PDMSB3_1137 glnK; regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) K04751 glnB; nitrogen regulatory protein P-II 1 D PDMSB3_2900 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D PDMSB3_2899 glnG; fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D PDMSB3_2213.1 Gamma-glutamyl-putrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_2901 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_0112 ntrY; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation (ntrY/X like system) K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D PDMSB3_0113 ntrX; Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D PDMSB3_1655.1 nifA; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein D PDMSB3_0035.2 C4-dicarboxylate transport transcriptional response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_0343 Signal transduction histidine kinase regulating C4-dicarboxylate transport system K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PDMSB3_0344 dctD; C4-dicarboxylate transport transcriptional regulatory protein DctD K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D PDMSB3_0342 dctA; C4-dicarboxylic acid, orotate and citrate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D PDMSB3_3807 dctA; C4-dicarboxylic acid, orotate and citrate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D PDMSB3_0422 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor D PDMSB3_1933.1 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D PDMSB3_3695 putative type IV fimbrial pilin protein K02650 pilA; type IV pilus assembly protein PilA D PDMSB3_1888.1 cheR; Putative methyltransferase Cher3 K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PDMSB3_4231 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PDMSB3_1588.1 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] D PDMSB3_0112.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0234 tsr; Methyl-accepting chemotaxis protein I K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0268.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0370.1 tar; Methyl-accepting chemotaxis protein II K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0384 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0426.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0863.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2400 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2617.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2811.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2813.1 tse; Methyl-accepting chemotaxis serine transducer K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3030 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3031 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3090 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0097.1 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0454 tar; methyl-accepting chemotaxis protein II K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0780 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_2314 tsr; Methyl-accepting chemotaxis protein I K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_2340 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_4233 tar; methyl-accepting chemotaxis protein II K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0058.1 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor D PDMSB3_4234 cheW; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PDMSB3_0026.1 Chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_4235 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_0030.1 cheY; Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4228 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4236 Response regulator receiver domain protein(CheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_1887.1 cheB; Putative protein-glutamate methylesterase/protein-glutamine glutaminase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PDMSB3_4229 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PDMSB3_1461 Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D PDMSB3_4379 wspC; putative biofilm formation methyltransferase WspC K13486 wspC; chemotaxis protein methyltransferase WspC D PDMSB3_4381 Methyl-accepting chemotaxis protein K13487 wspA; methyl-accepting chemotaxis protein WspA D PDMSB3_4380 Chemotaxis signal transduction protein K13488 wspB; chemotaxis-related protein WspB D PDMSB3_4378 Chemotaxis signal transduction protein K13489 wspD; chemotaxis-related protein WspD D PDMSB3_4377 Chemotaxis protein histidine kinase-like protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D PDMSB3_4376 cheB; Chemotaxis response regulator protein-glutamate methylesterase 4 K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61] D PDMSB3_4375 Diguanylate cyclase (GGDEF) domain-containing protein K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65] D PDMSB3_1263.1 Solute-binding protein Bamb_6123 K11688 dctP; TRAP-type transport system periplasmic protein D PDMSB3_2148.1 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 dctP; TRAP-type transport system periplasmic protein D PDMSB3_2952 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 dctP; TRAP-type transport system periplasmic protein D PDMSB3_2985.1 TRAP dicarboxylate transporter, periplasmic ligand binding subunit DctP K11688 dctP; TRAP-type transport system periplasmic protein D PDMSB3_1264.1 TRAP-type C4-dicarboxylate transport system, small permease component K11689 dctQ; TRAP-type transport system small permease protein D PDMSB3_2147.1 TRAP-type C4-dicarboxylate transport system, small permease component K11689 dctQ; TRAP-type transport system small permease protein D PDMSB3_2951 TRAP-type C4-dicarboxylate transport system, small permease component K11689 dctQ; TRAP-type transport system small permease protein D PDMSB3_1265.1 TRAP C4-dicarboxylate transporter, DctM subunit K11690 dctM; TRAP-type transport system large permease protein D PDMSB3_2146.1 TRAP transporter, DctM subunit K11690 dctM; TRAP-type transport system large permease protein D PDMSB3_2950 TRAP transporter, DctM subunit K11690 dctM; TRAP-type transport system large permease protein D PDMSB3_2984.1 TRAP transporter, DctM subunit K21393 dctQM; TRAP-type transport system permease protein D PDMSB3_3770 gltL; glutamate/aspartate transport protein (ABC superfamily, atp_bind) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_3771 gltK; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein D PDMSB3_3772 gltJ; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein D PDMSB3_3773 gltI; glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein D PDMSB3_3349.1 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PDMSB3_1953.1 Enoyl-CoA hydratase/carnithine racemase K13816 rpfF; DSF synthase D PDMSB3_1975.1 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D PDMSB3_0138 Histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D PDMSB3_0139 actR; Acid tolerance regulatory protein ActR K15012 regA; two-component system, response regulator RegA D PDMSB3_3977 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D PDMSB3_3976 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D PDMSB3_3975 petC; CYTOCHROME bC1 complex (ubiquinol:ferricytochrome c oxidoreductase), transmembrane subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D PDMSB3_0212 Cytochrome c551/c552 K08738 CYC; cytochrome c D PDMSB3_0865 cyt; Cytochrome c-552 K08738 CYC; cytochrome c D PDMSB3_2520 Cytochrome c551/c552 K08738 CYC; cytochrome c D PDMSB3_0395 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_0704.1 Cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_0715 cioA; ubiquinol oxidase subunit I, cyanide insensitive K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_1248.1 putative Cytochrome bd2, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_2444 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D PDMSB3_0394 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_0703.1 Cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_0716 Cytochrome d oxidase cyd, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_1247.1 putative Cytochrome bd2, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_2445 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D PDMSB3_0393 ybgT; conserved hypothetical protein K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D PDMSB3_2349 cydX; Cytochrome bd ubiquinol oxidase subunit X K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D PDMSB3_0993.1 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2118 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2656.1 Type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D PDMSB3_2139.1 conserved protein of unknown function K19620 phcB; extracellular factor (EF) 3-hydroxypalmitic acid methyl ester biosynthesis protein D PDMSB3_2140.1 Histidine kinase K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] D PDMSB3_1151.1 Signal transduction histidine kinase K19622 phcR; two-component system, response regulator PhcR D PDMSB3_0030.3 ctrA; Capsule polysaccharide export outer membrane protein CtrA K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_0693 epsA; EPS I polysaccharide export outer membrane protein EpsA K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_0842.1 Periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_1355.1 epsA; EPS I polysaccharide export outer membrane protein EpsA K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_2086 Periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_2910.1 epsA; EPS I polysaccharide export outer membrane protein EpsA K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_0843.1 epsP; putative low molecular weight protein-tyrosine-phosphatase EpsP K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D PDMSB3_1356.1 wzb; protein-tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D PDMSB3_2085 Protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D PDMSB3_2867 ptpA; Low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D PDMSB3_2911.1 epsP; putative low molecular weight protein-tyrosine-phosphatase EpsP K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D PDMSB3_0694 epsB; putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_0795 Capsular biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_0844.1 epsB; Putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_1357.1 epsB; Putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_1798 Capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_2087 Capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_2909.1 Tyrosine-protein kinase Wzc K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_0053.3 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_0764 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_2723.1 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PDMSB3_0845.1 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D PDMSB3_4217 Flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D PDMSB3_2053 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D PDMSB3_2598.1 mctR; Transcriptional regulatory protein MctR C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04082 Neuroactive ligand signaling C 04081 Hormone signaling C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome [PATH:pdio04142] D PDMSB3_1804 Beta-galactosidase/beta-glucuronidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] D PDMSB3_2197 conserved protein of unknown function K13444 SUMF1; formylglycine-generating enzyme [EC:1.8.3.7] C 04146 Peroxisome [PATH:pdio04146] D PDMSB3_0324.1 Putative acyl-CoA transferase/carnitine dehydratase K01796 AMACR; alpha-methylacyl-CoA racemase [EC:5.1.99.4] D PDMSB3_0709.1 Putative acyl-CoA transferase/carnitine dehydratase K01796 AMACR; alpha-methylacyl-CoA racemase [EC:5.1.99.4] D PDMSB3_0151 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin K00477 PHYH; phytanoyl-CoA hydroxylase [EC:1.14.11.18] D PDMSB3_1736 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_3902 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_2149 Zn-finger containing NTP pyrophosphohydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D PDMSB3_0039.1 sgaA; Serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D PDMSB3_2875.1 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PDMSB3_3566 icd; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D PDMSB3_0268 liuE; 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D PDMSB3_0556 katA; Catalase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_0922 Catalase-related peroxidase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_1421.1 srpA; Catalase-related peroxidase K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_1891.1 katE; hydroperoxidase HPII(III) (catalase) K03781 katE; catalase [EC:1.11.1.6] D PDMSB3_0898 Superoxide dismutase, Cu-Zn family K04565 SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1] D PDMSB3_3598 sodB; superoxide dismutase, Fe K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1] C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D PDMSB3_3977 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:pdio02024] D PDMSB3_1729 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PDMSB3_2820 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PDMSB3_2770.1 lasI; Acyl-homoserine-lactone synthase K13060 lasI; acyl homoserine lactone synthase [EC:2.3.1.184] D PDMSB3_2768.1 lasR; Transcriptional activator protein LasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D PDMSB3_3922 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D PDMSB3_3923 trpG; bifunctional protein:[Includes: para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase); anthranilate synthase component II] K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D PDMSB3_0757 Rhamnosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D PDMSB3_0568 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PDMSB3_2197.1 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D PDMSB3_2276 Signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PDMSB3_2275 qseB; DNA-binding response regulator in two-component regulatory system with QseC K07666 qseB; two-component system, OmpR family, response regulator QseB D PDMSB3_2529.1 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD D PDMSB3_4240 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD D PDMSB3_2530.1 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC D PDMSB3_4239 protein of unknown function K02402 flhC; flagellar transcriptional activator FlhC D PDMSB3_1141.1 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PDMSB3_1283 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PDMSB3_0729 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D PDMSB3_0730 Amino acid transporter K20265 gadC; glutamate:GABA antiporter D PDMSB3_0030.4 Type IV secretion system protein VirB3 K20529 trbD; type IV secretion system protein TrbD D PDMSB3_0029.4 Type IV secretion system protein VirB4 K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D PDMSB3_0028.4 conserved exported protein of unknown function K20266 trbJ; type IV secretion system protein TrbJ D PDMSB3_0120.1 ABC transporter, periplasmic spermidine putrescine-binding protein potD (TC_3.A.1.11.1) K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0338 ABC-type Fe3+ transport system, periplasmic component K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0357.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0907 ABC spermidine/putrescine transporter, periplasmic ligand binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0922.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_1407.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_1607.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_1751.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_2129.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_2644.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_2962 ABC-type Fe3+ transport system, periplasmic component K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0122.1 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_0340 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_0354.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_0905 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_1405.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_1603.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_1753.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_2134.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_2640.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_2963 ABC-type sulfate transport system, permease component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_2964 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_0121.1 Spermidine Putrescine ABC transporter permease component potB (TC_3.A.1.11.1) K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_0339 ABC-type uncharacterized transport system, permease component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_0355.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_0906 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_1406.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_1602.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_1752.1 Putrescine transport system permease protein potH K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_2133.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_2639.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_0119.1 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_0341 cysA; Sulfate/thiosulfate import ATP-binding protein CysA 2 K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_0356.1 fbpC; Fe(3+) ions import ATP-binding protein FbpC K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_0908 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_1404.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_1599.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_1750.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_2132.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_2638.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_2965 cysA; Sulfate/thiosulfate import ATP-binding protein CysA 2 K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_0196 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0304 ABC-type branched-chain amino acid transport system, periplasmic component (fragment) K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0519.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0547.1 amiC; Aliphatic amidase expression-regulating protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0605 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0806 Amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0847 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1312 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1549 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1764 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_2090.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_2710.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3031.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3433 conserved exported protein of unknown function K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3542 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4285 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4311 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4312 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4315 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0520.1 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_0805 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_1761 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_2716.1 putative permease component of branched-chain amino acid transport system K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3033.1 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3113 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3432 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3541 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_4310 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_4314 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_0521.1 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_0804 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1760 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3032.1 branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3112 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3431 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3540 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_4309 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4313 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_0522.1 braF; High-affinity branched-chain amino acid transport ATP-binding protein BraF K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1759 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_2715.1 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3034.1 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3111 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3429 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3539 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4317 braF; High-affinity branched-chain amino acid transport ATP-binding protein BraF K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_0523.1 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_0803 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1758 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_2714.1 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3030.1 braG; High-affinity branched-chain amino acid transport ATP-binding protein BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3110 ABC-type branched-chain amino acid transport system, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3430 ABC-type branched-chain amino acid transport system, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3538 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4308 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4316 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1953.1 Enoyl-CoA hydratase/carnithine racemase K13816 rpfF; DSF synthase D PDMSB3_1952.1 gmr; modulator of Rnase II stability K14051 gmr; c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52] D PDMSB3_1736 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_3902 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_3349.1 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PDMSB3_1288.1 Zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D PDMSB3_3650 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D PDMSB3_1595 Transcriptional regulator K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis D PDMSB3_1414.1 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D PDMSB3_3416 ribD; Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D PDMSB3_0156 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0246.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0698.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0754.1 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1147.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1697 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1714.1 Heavy metal RND efflux outer membrane protein, CzcC family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1874.1 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2839.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2950.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_3084 fusA; Fusaric acid resistance protein FusA K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_3659 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_4351 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2630.1 oppA; oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein D PDMSB3_2631.1 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein D PDMSB3_2632.1 oppC; oligopeptide transporter subunit; membrane component of ABC superfamily K15582 oppC; oligopeptide transport system permease protein D PDMSB3_2633.1 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein D PDMSB3_2634.1 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K10823 oppF; oligopeptide transport system ATP-binding protein D PDMSB3_0650.1 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_1446 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_1518.1 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_2119.1 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_3078.1 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_3573 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_0651.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_1447 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_1519.1 Putative peptide transport system permease protein BAB2_1050 K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_2122.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_3077.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_3574 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_0652.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_1448 yliD; putative peptide transporter permease subunit: membrane component of ABC superfamily K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_1520.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_2121.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_3076.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_3575 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_0653.1 dppD; dipeptide transporter; ATP-binding component of ABC superfamily K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_1449 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_1521.1 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_2120.1 ATPase component of various ABC-type transport systems with duplicated ATPase domain K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_3576 Oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_0654.1 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K02032 ddpF; peptide/nickel transport system ATP-binding protein D PDMSB3_4389 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PDMSB3_0438.1 putative Subtilisin K14645 K14645; serine protease [EC:3.4.21.-] D PDMSB3_4095 secE; Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D PDMSB3_1317 Protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D PDMSB3_4059 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY D PDMSB3_0550 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC D PDMSB3_3880 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PDMSB3_0404 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein K03110 ftsY; fused signal recognition particle receptor D PDMSB3_0364 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB D PDMSB3_3858 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PDMSB3_1629 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3020 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3249.1 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3706 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:pdio02030] D PDMSB3_0112.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0234 tsr; Methyl-accepting chemotaxis protein I K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0268.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0370.1 tar; Methyl-accepting chemotaxis protein II K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0384 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0426.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0863.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2400 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2617.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2811.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2813.1 tse; Methyl-accepting chemotaxis serine transducer K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3030 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3031 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3090 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0097.1 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0454 tar; methyl-accepting chemotaxis protein II K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0780 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_2314 tsr; Methyl-accepting chemotaxis protein I K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_2340 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_4233 tar; methyl-accepting chemotaxis protein II K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0058.1 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor D PDMSB3_0085.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_0842 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1038 Ribose transport system substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1046 Ribose transport system substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1708.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1993.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2345 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2802.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2829.1 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2849.1 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_0288 dppA; Periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_4169 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_4170 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_0026.1 Chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_4235 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_4234 cheW; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PDMSB3_0030.1 cheY; Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4228 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4236 Response regulator receiver domain protein(CheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_3369.1 Chemotaxis protein CheC --inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC D PDMSB3_4227 cheZ; chemotaxis regulator, protein phosphatase for CheY K03414 cheZ; chemotaxis protein CheZ D PDMSB3_1887.1 cheB; Putative protein-glutamate methylesterase/protein-glutamine glutaminase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PDMSB3_4229 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PDMSB3_1588.1 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] D PDMSB3_1461 Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D PDMSB3_4230 cheD; putative chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D PDMSB3_1888.1 cheR; Putative methyltransferase Cher3 K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PDMSB3_4231 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PDMSB3_4187 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG D PDMSB3_4194 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM D PDMSB3_4195 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN D PDMSB3_0882.1 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_2279.1 Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA D PDMSB3_4238 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_0881.1 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB D PDMSB3_2278.1 Flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB D PDMSB3_4237 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:pdio02040] D PDMSB3_4184 fliE; flagellar basal-body component K02408 fliE; flagellar hook-basal body complex protein FliE D PDMSB3_4185 flagellar basal-body MS-ring and collar protein (fragment) K02409 fliF; flagellar M-ring protein FliF D PDMSB3_4187 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG D PDMSB3_4188 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH D PDMSB3_4189 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D PDMSB3_4190 Flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D PDMSB3_4191 Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D PDMSB3_4193 Flagellar protein FliL K02415 fliL; flagellar protein FliL D PDMSB3_4194 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM D PDMSB3_4195 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN D PDMSB3_4196 Flagellar protein K02418 fliO; flagellar protein FliO/FliZ D PDMSB3_4197 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D PDMSB3_4198 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ D PDMSB3_4199 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR D PDMSB3_4223 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA D PDMSB3_4224 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB D PDMSB3_4216 Flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D PDMSB3_4215 flgB; flagellar component of cell-proximal portion of basal-body rod K02387 flgB; flagellar basal-body rod protein FlgB D PDMSB3_4214 flgC; flagellar component of cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC D PDMSB3_4213 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD D PDMSB3_4212 Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D PDMSB3_4211 flgF; flagellar component of cell-proximal portion of basal-body rod K02391 flgF; flagellar basal-body rod protein FlgF D PDMSB3_4210 flgG; flagellar component of cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG D PDMSB3_4017 flgH; Flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D PDMSB3_4209 flgH; flagellar protein of basal-body outer-membrane L ring K02393 flgH; flagellar L-ring protein FlgH D PDMSB3_4208 flgI; flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI D PDMSB3_4207 Flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D PDMSB3_4205 Flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D PDMSB3_4204 Flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D PDMSB3_0069.3 Flagellin K02406 fliC; flagellin D PDMSB3_4258 fliC; A-type flagellin K02406 fliC; flagellin D PDMSB3_4259 Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D PDMSB3_4183 fliS; Flagellar secretion chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D PDMSB3_0071.3 Protein FliT K02423 fliT; flagellar protein FliT D PDMSB3_4182 putative flagellar protein FliT K02423 fliT; flagellar protein FliT D PDMSB3_4260 conserved protein of unknown function K02423 fliT; flagellar protein FliT D PDMSB3_0882.1 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_2279.1 Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA D PDMSB3_4238 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_0881.1 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB D PDMSB3_2278.1 Flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB D PDMSB3_4237 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB D PDMSB3_4217 Flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D PDMSB3_4218 Flagellar biosynthesis/type III secretory pathway chaperone K02399 flgN; flagellar biosynthesis protein FlgN D PDMSB3_1826 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein D PDMSB3_3002 tcyA; L-cystine-binding protein TcyA K02424 tcyA; L-cystine transport system substrate-binding protein D PDMSB3_0236.1 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor D PDMSB3_0504.1 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor D PDMSB3_3049.1 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D PDMSB3_3113.1 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D PDMSB3_2529.1 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD D PDMSB3_4240 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD D PDMSB3_2530.1 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC D PDMSB3_4239 protein of unknown function K02402 flhC; flagellar transcriptional activator FlhC D PDMSB3_0422 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor D PDMSB3_1933.1 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D PDMSB3_4220 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D PDMSB3_2845 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04981 Folate transport and metabolism [PATH:pdio04981] D PDMSB3_4156 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] D PDMSB3_3266 dfrA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D PDMSB3_0625 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_1495.1 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PDMSB3_3262 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] C 04980 Cobalamin transport and metabolism [PATH:pdio04980] D PDMSB3_0566 cobO; Cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PDMSB3_2149.1 Methylmalonyl-CoA mutase auxilliary protein, metallochaperone K07588 MMAA; GTPase [EC:3.6.5.-] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation C 04382 Cornified envelope formation [PATH:pdio04382] D PDMSB3_2273 Hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_2278 Hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_3061.1 Ceramide glucosyltransferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_1232.1 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PDMSB3_1540 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PDMSB3_2944 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D PDMSB3_3359 Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:pdio01501] D PDMSB3_0232 Outer membrane protein (Porin) K08720 ompU; outer membrane protein OmpU D PDMSB3_1510.1 Outer membrane protein (porin) K08720 ompU; outer membrane protein OmpU D PDMSB3_2957 Outer membrane protein (Porin) K08720 ompU; outer membrane protein OmpU D PDMSB3_3331.1 Outer membrane protein (Porin) K08720 ompU; outer membrane protein OmpU D PDMSB3_0131 conserved membrane protein of unknown function K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D PDMSB3_3199 nagZ; Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D PDMSB3_2939.1 ampR; HTH-type transcriptional activator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D PDMSB3_1489.1 ampC; Beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D PDMSB3_2630.1 oppA; oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein D PDMSB3_2631.1 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein D PDMSB3_2632.1 oppC; oligopeptide transporter subunit; membrane component of ABC superfamily K15582 oppC; oligopeptide transport system permease protein D PDMSB3_2633.1 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein D PDMSB3_2634.1 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K10823 oppF; oligopeptide transport system ATP-binding protein D PDMSB3_0157 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0247.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1058.1 putative Co/Zn/Cd efflux system membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1713.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1876.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_2841.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_3661 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0158 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_0248.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1057.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1712.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1875.1 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump D PDMSB3_2840.1 bepE; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump D PDMSB3_3660 acrB; multidrug efflux system protein K18138 acrB; multidrug efflux pump D PDMSB3_0156 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0246.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0698.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0754.1 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1147.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1697 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1714.1 Heavy metal RND efflux outer membrane protein, CzcC family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1874.1 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2839.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2950.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_3084 fusA; Fusaric acid resistance protein FusA K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_3659 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_4351 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0993.1 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2118 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2656.1 Type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D PDMSB3_2133 Membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_2390 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_4039 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_0120 mrdA; Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D PDMSB3_0862.1 penA; putative peptidoglycan D,D-transpeptidase PenA K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PDMSB3_3896 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:pdio01502] D PDMSB3_1278.1 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PDMSB3_3887 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PDMSB3_2617 dadX; alanine racemase 2, PLP-binding K01775 alr; alanine racemase [EC:5.1.1.1] D PDMSB3_3070.1 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PDMSB3_3894 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D PDMSB3_3893 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D PDMSB3_3889 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pdio01503] D PDMSB3_1904 yfbF; undecaprenyl phosphate-L-Ara4FN transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D PDMSB3_1901 putative xylanase/chitin deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D PDMSB3_3621 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PDMSB3_3208 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107] D PDMSB3_3670 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107] D PDMSB3_0117.2 Thiol-disulfide isomerase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D PDMSB3_0291 dsbA; Thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D PDMSB3_2661 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D PDMSB3_0157 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0247.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1058.1 putative Co/Zn/Cd efflux system membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1713.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1876.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_2841.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_3661 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0158 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_0248.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1057.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1712.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1875.1 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump D PDMSB3_2840.1 bepE; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump D PDMSB3_3660 acrB; multidrug efflux system protein K18138 acrB; multidrug efflux pump D PDMSB3_0993.1 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2118 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2656.1 Type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D PDMSB3_2580 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D PDMSB3_2304 conserved membrane protein of unknown function K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:pdio01000] C 01001 Protein kinases [BR:pdio01001] D PDMSB3_1052.1 Serine/threonine protein kinase involved in cell cycle control K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PDMSB3_0085.3 conserved protein of unknown function K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D PDMSB3_1604.1 hipA; regulator with hipB K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D PDMSB3_2045 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D PDMSB3_0694 epsB; putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_0795 Capsular biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_0844.1 epsB; Putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_1357.1 epsB; Putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_1798 Capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_2087 Capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_2909.1 Tyrosine-protein kinase Wzc K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_3153 Phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D PDMSB3_1071.1 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_1145 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_1987 putative oxidative stress resistance periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_4023 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_1061.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1330.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1525 irlS; Sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1715.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_2682.1 irlS; Sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_2276 Signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PDMSB3_1282 kdpD; fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein; sensory histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D PDMSB3_2067.1 Signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PDMSB3_2921.1 Signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PDMSB3_3671 Signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D PDMSB3_0059.1 Signal transduction histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D PDMSB3_3449 Signal transduction histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D PDMSB3_2597.1 Sensor histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D PDMSB3_2900 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D PDMSB3_0112 ntrY; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation (ntrY/X like system) K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D PDMSB3_0343 Signal transduction histidine kinase regulating C4-dicarboxylate transport system K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PDMSB3_0036.2 Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D PDMSB3_0026.1 Chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_4235 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_4377 Chemotaxis protein histidine kinase-like protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D PDMSB3_0138 Histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D PDMSB3_2140.1 Histidine kinase K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:pdio01009] D PDMSB3_4173 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PDMSB3_1192 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG D PDMSB3_1963 Phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:pdio01002] D PDMSB3_3557 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36] D PDMSB3_3873 gspO; Leader peptidase / N-methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D PDMSB3_1713 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PDMSB3_2264.1 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PDMSB3_2564 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PDMSB3_4330 GMP synthase family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PDMSB3_2212.1 puuD; Gamma-glutamyl-gamma-aminobutyrate hydrolase K07010 K07010; putative glutamine amidotransferase D PDMSB3_2657.1 ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D PDMSB3_0178.1 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PDMSB3_4028 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D PDMSB3_0389 putative phosphosugar isomerase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_1519 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_4145 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PDMSB3_1635 Intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D PDMSB3_1940.1 Intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D PDMSB3_1821.1 Phytochelatin synthase K25587 E3.4.17.25; glutathione-S-conjugate glycine hydrolase [EC:3.4.17.25] D PDMSB3_1835.1 Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D PDMSB3_3369 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D PDMSB3_2886 prlC; Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D PDMSB3_1278.1 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PDMSB3_1318.1 putative transmembrane protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D PDMSB3_0862 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D PDMSB3_1496.1 Microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D PDMSB3_2609 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PDMSB3_0934.1 hipO; Hippurate hydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32] D PDMSB3_1531 hipO; Hippurate hydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32] D PDMSB3_2450.1 abgB; p-aminobenzoyl-glutamate hydrolase subunit B K12941 abgB; aminobenzoyl-glutamate utilization protein B D PDMSB3_0951 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D PDMSB3_2595 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D PDMSB3_3747 pepP; proline aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D PDMSB3_3943 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D PDMSB3_0473.1 conserved protein of unknown function K08646 MEP; peptidyl-Lys metalloendopeptidase [EC:3.4.24.20] D PDMSB3_0810.1 ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PDMSB3_2454 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PDMSB3_3163 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PDMSB3_3271 Zn-dependent protease with chaperone function K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D PDMSB3_0109 htpX; Protease HtpX homolog K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D PDMSB3_3692 putative Zn-dependent protease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D PDMSB3_2586 yaeL; zinc metallopeptidase K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D PDMSB3_3523 D-aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D PDMSB3_1928 conserved protein of unknown function K09933 mtfA; MtfA peptidase D PDMSB3_3208 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107] D PDMSB3_3670 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107] D PDMSB3_3979 Periplasmic serine endoprotease DegP-like K04772 degQ; serine protease DegQ [EC:3.4.21.-] D PDMSB3_0438.1 putative Subtilisin K14645 K14645; serine protease [EC:3.4.21.-] D PDMSB3_2898 Serine protease, S9A family peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D PDMSB3_0322 dacA; D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D PDMSB3_2873 D-alanyl-D-alanine carboxypeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D PDMSB3_3673 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D PDMSB3_2029 clpP; ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D PDMSB3_3588 clpP; proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D PDMSB3_2031 lon; DNA-binding ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D PDMSB3_2774 ATP-dependent Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D PDMSB3_1872 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D PDMSB3_1824 Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D PDMSB3_3205 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89] D PDMSB3_0599.1 Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D PDMSB3_3292 Lysophospholipase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23] D PDMSB3_0360 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D PDMSB3_3224 ClpP class periplasmic serine protease K04773 sppA; protease IV [EC:3.4.21.-] D PDMSB3_1164.1 Kumamolysin K08677 kscP; kumamolisin [EC:3.4.21.123] D PDMSB3_2432 ldcA; Murein tetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D PDMSB3_0141 hslV; peptidase component of the HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D PDMSB3_3529 iaaA; isoaspartyl dipeptidase with L-asparaginase activity K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PDMSB3_2744.1 ggt; Glutathione hydrolase proenzyme K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_3123 ggt; Glutathione hydrolase proenzyme K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_3725 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D PDMSB3_1746.1 hpxW; Oxamate amidohydrolase proenzyme K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] D PDMSB3_2060.1 hpxW; Oxamate amidohydrolase proenzyme K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] D PDMSB3_3267 pmbA; peptidase required for the maturation and secretion of the antibiotic peptide MccB17 K03592 pmbA; PmbA protein D PDMSB3_0569 tldD; putative peptidase K03568 tldD; TldD protein D PDMSB3_0499.1 Alpha-2-macroglobulin K06894 yfhM; alpha-2-macroglobulin D PDMSB3_2817 Protein HflC K04087 hflC; modulator of FtsH protease HflC D PDMSB3_2818 Protein HflK K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:pdio01003] D PDMSB3_2273 Hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_2278 Hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_3061.1 Ceramide glucosyltransferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D PDMSB3_1294 Glycosyltransferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] D PDMSB3_1552 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D PDMSB3_1818.1 glgA; Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D PDMSB3_1087.1 bcsA; Cellulose synthase catalytic subunit [UDP-forming] K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D PDMSB3_3836 mtgA; Biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_2133 Membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_2390 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_4039 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_3891 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_0119 mrdB; cell wall shape-determining protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_1513 Glycosyltransferase K21011 pelF; polysaccharide biosynthesis protein PelF D PDMSB3_0851.1 Exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D PDMSB3_1592.1 ndvB; Cyclic beta-(1,2)-glucan synthase NdvB K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] D PDMSB3_1159 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D PDMSB3_2072 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D PDMSB3_3183 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] C 01005 Lipopolysaccharide biosynthesis proteins [BR:pdio01005] D PDMSB3_2580 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D PDMSB3_2579 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D PDMSB3_0017.3 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D PDMSB3_3882 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D PDMSB3_2583 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D PDMSB3_2663 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D PDMSB3_3600 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D PDMSB3_0148 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D PDMSB3_2389 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D PDMSB3_2293 Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D PDMSB3_0814 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D PDMSB3_0399 Lipid A deacylase K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D PDMSB3_2846 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D PDMSB3_3602 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D PDMSB3_0426 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D PDMSB3_0427 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D PDMSB3_3301 rfaE; D-beta-D-heptose 7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D PDMSB3_0309 D-beta-D-heptose 1-phosphate adenylyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D PDMSB3_0812 rfaC; Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D PDMSB3_0960 Lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D PDMSB3_3688 rfaF; ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D PDMSB3_0210 yraO; DnaA initiator-associating factor for replication initiation K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D PDMSB3_0524 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D PDMSB3_3300 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D PDMSB3_0757 Rhamnosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D PDMSB3_0576.1 Glycosyl transferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pdio01011] D PDMSB3_3998 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D PDMSB3_3612 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D PDMSB3_3888 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D PDMSB3_3892 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D PDMSB3_3895 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D PDMSB3_3887 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D PDMSB3_2617 dadX; alanine racemase 2, PLP-binding K01775 alr; alanine racemase [EC:5.1.1.1] D PDMSB3_3070.1 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D PDMSB3_1403 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D PDMSB3_2432 ldcA; Murein tetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D PDMSB3_3893 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D PDMSB3_3889 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D PDMSB3_3133 uppP; Undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PDMSB3_3485 uppP; Undecaprenyl-diphosphatase 1 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D PDMSB3_3606 mviN; conserved hypothetical protein; putative inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase D PDMSB3_2133 Membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_2390 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_4039 mrcA; Penicillin-insensitive transglycosylase / Penicillin-sensitive transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D PDMSB3_0120 mrdA; Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D PDMSB3_0862.1 penA; putative peptidoglycan D,D-transpeptidase PenA K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PDMSB3_3896 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PDMSB3_0322 dacA; D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D PDMSB3_3673 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D PDMSB3_2873 D-alanyl-D-alanine carboxypeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D PDMSB3_3836 mtgA; Biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_3891 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_0119 mrdB; cell wall shape-determining protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_1278.1 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PDMSB3_1318.1 putative transmembrane protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D PDMSB3_4155 Soluble lytic murein transglycosylase-like protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D PDMSB3_3918 Membrane-bound lytic murein transglycosylase K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D PDMSB3_3296 Lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D PDMSB3_3171 Soluble lytic murein transglycosylase-like protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D PDMSB3_2063 yceG; putative conserved membrane associated protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D PDMSB3_0207 rlpA; Endolytic peptidoglycan transglycosylase RlpA K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D PDMSB3_3621 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PDMSB3_3855 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:pdio01004] D PDMSB3_3217 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D PDMSB3_3218 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D PDMSB3_3351 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PDMSB3_3355 3-oxoacyl-(Acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D PDMSB3_3213 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PDMSB3_3352 3-oxoacyl-(Acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D PDMSB3_0328.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_0952.1 Putative short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_0991 tsaC; 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1273 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1468 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1612 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1613 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_1739 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2226 Uncharacterized oxidoreductase MexAM1_META1p0182 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2242 conserved protein of unknown function K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2371.1 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2391.1 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2479.1 Acetoacetyl-CoA reductase/3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3216 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3323.1 putative 3-beta-hydroxycholanate 3-dehydrogenase (NAD(+)) 1 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3335.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_3353 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PDMSB3_2581 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PDMSB3_3112.1 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D PDMSB3_2648 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PDMSB3_3093.1 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D PDMSB3_2132 fabV; Enoyl-[acyl-carrier-protein] reductase [NADH] K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D PDMSB3_1073 putative enzyme K17362 ACOT13; acyl-coenzyme A thioesterase 13 [EC:3.1.2.-] D PDMSB3_2036 tesA; Esterase TesA K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D PDMSB3_2481.1 Acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D PDMSB3_0509 yciA; Acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D PDMSB3_3088.1 Acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D PDMSB3_0408.1 Fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D PDMSB3_3551 Fatty-acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D PDMSB3_1434 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_1745 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2024.1 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_2503 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3039 Acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D PDMSB3_3092 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D PDMSB3_1736 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_3902 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_4293 yngI; putative acyl-CoA synthetase YngI K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D PDMSB3_3219 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D PDMSB3_3614 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D PDMSB3_0523 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PDMSB3_0750 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D PDMSB3_2091.1 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:pdio01008] D PDMSB3_2889.1 mbtH; Protein MbtH K05375 mbtH; MbtH protein D PDMSB3_1477 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:pdio01006] D PDMSB3_0227.1 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D PDMSB3_3868 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D PDMSB3_2589 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D PDMSB3_2935.1 Phytoene/squalene synthetase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] D PDMSB3_1994 Phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D PDMSB3_0593 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PDMSB3_0559 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D PDMSB3_0381 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:pdio01007] D PDMSB3_2639 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PDMSB3_3125 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PDMSB3_1231 gluQ; Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D PDMSB3_3759 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PDMSB3_2835 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PDMSB3_3020.1 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PDMSB3_2658 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PDMSB3_0293 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PDMSB3_0895 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PDMSB3_3556 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PDMSB3_3096 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PDMSB3_3799 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PDMSB3_2857 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PDMSB3_0494 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PDMSB3_2824 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PDMSB3_0526 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D PDMSB3_0525 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D PDMSB3_0941 serS; seryl-tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PDMSB3_3861 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PDMSB3_3055 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PDMSB3_3120 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PDMSB3_3051 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PDMSB3_3050 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PDMSB3_1515 Glycoside hydrolase, end-alpha-1,4-polygalactosaminidase K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D PDMSB3_1910 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PDMSB3_1388 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_1883.1 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D PDMSB3_0058 ybdL; Methionine aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88] D PDMSB3_1354 ybdL; methionine aminotransferase, PLP-dependent K14287 ybdL; methionine transaminase [EC:2.6.1.88] D PDMSB3_1932.1 aruH; Arginine--pyruvate transaminase AruH K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84] D PDMSB3_2606 Succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D PDMSB3_0408 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3310 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_3995 hisC; Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PDMSB3_0014.1 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D PDMSB3_0274 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D PDMSB3_2707.1 bauA; Beta-alanine--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D PDMSB3_3536 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D PDMSB3_1568 astC; succinylornithine transaminase, PLP-dependent K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D PDMSB3_2136.1 gabT; 4-aminobutyrate aminotransferase GabT K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2556.1 puuE; GABA aminotransferase, PLP-dependent K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PDMSB3_2214.1 spuC; Putrescine--pyruvate aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D PDMSB3_0275 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D PDMSB3_0378.1 dgdA; 2,2-dialkylglycine decarboxylase K00596 E4.1.1.64; 2,2-dialkylglycine decarboxylase (pyruvate) [EC:4.1.1.64] D PDMSB3_2405.1 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PDMSB3_3415 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D PDMSB3_0323 dat; D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D PDMSB3_3087.1 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_3685 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D PDMSB3_0584 Aminodeoxychorismate synthase, component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38] D PDMSB3_0867.1 phnW; 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D PDMSB3_1174.1 phnW; 2-aminoethylphosphonate--pyruvate transaminase 2 K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D PDMSB3_2223 phnW; 2-aminoethylphosphonate--pyruvate transaminase 1 K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37] D PDMSB3_0039.1 sgaA; Serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D PDMSB3_3312 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D PDMSB3_0794 rffA; TDP-4-oxo-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:pdio00194] D PDMSB3_2480 atpC; ATP synthase epsilon chain 2 K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D PDMSB3_4294 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D PDMSB3_2481 atpD; F1 sector of membrane-bound ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D PDMSB3_4295 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D PDMSB3_2473 F0F1-type ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D PDMSB3_4296 atpG; F1 sector of membrane-bound ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D PDMSB3_2474 atpA; ATP synthase subunit alpha 1 K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D PDMSB3_4297 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D PDMSB3_4298 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D PDMSB3_2475 atpF; ATP synthase subunit b 3 K02109 ATPF0B; F-type H+-transporting ATPase subunit b D PDMSB3_4299 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D PDMSB3_2476 atpE; ATP synthase subunit c 2 K02110 ATPF0C; F-type H+-transporting ATPase subunit c D PDMSB3_4300 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D PDMSB3_2477 atpB; ATP synthase subunit a 2 K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PDMSB3_4301 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PDMSB3_2479 putative F0F1-ATPase subunit K02116 atpI; ATP synthase protein I D PDMSB3_4302 putative ATP synthase protein I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:pdio03000] D PDMSB3_1163 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_2678 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_0052 DNA-binding domain-containing protein, AraC-type K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D PDMSB3_0681 DNA-binding domain-containing protein, AraC-type K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D PDMSB3_1948.1 DNA-binding domain-containing protein, AraC-type K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D PDMSB3_0046 DNA gyrase inhibitor K13652 K13652; AraC family transcriptional regulator D PDMSB3_3193.1 conserved protein of unknown function K13653 K13653; AraC family transcriptional regulator D PDMSB3_0040.1 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D PDMSB3_0248.2 AraC-type DNA-binding protein K07506 K07506; AraC family transcriptional regulator D PDMSB3_0702.1 DNA-binding domain-containing protein, AraC-type K07506 K07506; AraC family transcriptional regulator D PDMSB3_0821.1 DNA-binding domain-containing protein, AraC-type K07506 K07506; AraC family transcriptional regulator D PDMSB3_1416.1 DNA-binding domain-containing protein, AraC-type K07506 K07506; AraC family transcriptional regulator D PDMSB3_2809.1 protein of unknown function K07506 K07506; AraC family transcriptional regulator D PDMSB3_4359 ada; Methylphosphotriester-DNA--protein-cysteine S-methyltransferase / Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PDMSB3_1042.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D PDMSB3_2561.1 cdhR; HTH-type transcriptional regulator CdhR K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D PDMSB3_1567 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D PDMSB3_1478.1 cdhR; HTH-type transcriptional regulator CdhR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D PDMSB3_1494.1 cdhR; HTH-type transcriptional regulator CdhR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D PDMSB3_0325 gcvA; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_0507 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_0904 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_0960.1 Transcriptional regulatory protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_1408.1 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_1986.1 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_2202.1 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_2552 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_3467 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D PDMSB3_0278.1 ydcI; putative DNA-binding transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D PDMSB3_1855.1 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D PDMSB3_1021.1 Transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D PDMSB3_2581.1 Transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D PDMSB3_0554 Transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D PDMSB3_1524 argP; HTH-type transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D PDMSB3_2856.1 Transcriptional regulator K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator D PDMSB3_0848 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D PDMSB3_1877 cbl; DNA-binding transcriptional activator of cysteine biosynthesis K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D PDMSB3_1530 Transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D PDMSB3_2594.1 Transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D PDMSB3_1467.1 putative transcription regulator; putative ttuA activator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D PDMSB3_1614.1 yeaT; putative DNA-binding transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D PDMSB3_2939.1 ampR; HTH-type transcriptional activator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D PDMSB3_0930 Transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_1111 Transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_1322.1 putative transcription regulator protein of MDR efflux pump cluster K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_2541.1 yhjC; Uncharacterized HTH-type transcriptional regulator YhjC K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_2589.1 Transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_0042.1 Transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D PDMSB3_2262 Transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D PDMSB3_2271 Transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D PDMSB3_2377.1 Transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D PDMSB3_3775 Transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D PDMSB3_0638.1 cfxR; HTH-type transcriptional regulator CfxR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D PDMSB3_0836.1 rbcR; RuBisCO operon transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D PDMSB3_1529 cfxR; HTH-type transcriptional regulator CfxR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D PDMSB3_0780.1 Transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D PDMSB3_2234 putative cat1 operon transcriptional activator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D PDMSB3_2242.1 benM; HTH-type transcriptional regulator BenM K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D PDMSB3_2446.1 Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family) K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D PDMSB3_1698.1 Deoxyribose operon repressor, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D PDMSB3_1173.1 Transcriptional regulator of sugar metabolism K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D PDMSB3_1424.1 Transcriptional regulator of sugar metabolism K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D PDMSB3_3726 glpR; DNA-binding transcriptional repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D PDMSB3_0184 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D PDMSB3_0431.1 xylR; DNA-binding transcriptional activator, xylose-binding K02529 galR; LacI family transcriptional regulator, galactose operon repressor D PDMSB3_1051.1 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D PDMSB3_2341 purR; HTH-type transcriptional repressor PurR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D PDMSB3_2986.1 ABC-type sugar transport system, periplasmic component K02529 galR; LacI family transcriptional regulator, galactose operon repressor D PDMSB3_3083.1 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D PDMSB3_2360 Transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D PDMSB3_2186.1 Transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D PDMSB3_0931.1 Transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D PDMSB3_1233.1 hutC; Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D PDMSB3_1234.1 hutC; Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D PDMSB3_1541 hutC; Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D PDMSB3_0387 Transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D PDMSB3_3579 Transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D PDMSB3_0154.1 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D PDMSB3_2158.1 Transcriptional regulator K03710 K03710; GntR family transcriptional regulator D PDMSB3_2107 glcC; DNA-binding transcriptional dual regulator, glycolate-binding K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D PDMSB3_0118.1 Putative GntR-family regulatory protein and aminotransferase near polyamine transporter K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D PDMSB3_2555.1 Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain) K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D PDMSB3_2626.1 Transcriptional regulator with HTH domain and aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D PDMSB3_3213.1 Transcriptional regulator, GntR family / Aspartate aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D PDMSB3_1492.1 betI; DNA-binding transcriptional repressor K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D PDMSB3_3663 acrR; DNA-binding transcriptional repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D PDMSB3_0134 slmA; Nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D PDMSB3_3008 Transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D PDMSB3_0395.1 Transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D PDMSB3_0772.1 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D PDMSB3_0914.1 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D PDMSB3_2395 Transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D PDMSB3_2722.1 nicS; HTH-type transcriptional repressor NicS K22294 nicS; TetR/AcrR family transcriptional regulator, upper aerobic nicotinate degradation pathway regulator D PDMSB3_0204 bkdR; Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_0262 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_0614 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_1159.1 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_2990.1 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_3038 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_3284 dadR; transcriptional regulator for dadAX gene cluster (AsnC family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_3631 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_4117 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_4322 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_4373 bkdR; Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_1641 ybaO; putative DNA-binding transcriptional regulator with homology to Lrp K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D PDMSB3_2768.1 lasR; Transcriptional activator protein LasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D PDMSB3_0446.1 Transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D PDMSB3_0211.1 ohrR; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D PDMSB3_1380 hmrR; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D PDMSB3_3804 fur; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D PDMSB3_1288.1 Zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D PDMSB3_3650 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D PDMSB3_0304.1 Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D PDMSB3_0935.1 pcaR; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D PDMSB3_3321.1 pcaR; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D PDMSB3_0762.1 mhpR; DNA-binding transcriptional activator, 3HPP-binding K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator D PDMSB3_2285 kdgR; DNA-binding transcriptional repressor KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D PDMSB3_1595 Transcriptional regulator K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis D PDMSB3_3349.1 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D PDMSB3_0425.1 protein of unknown function K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D PDMSB3_0601 cAMP-binding protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D PDMSB3_2517 fnr; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D PDMSB3_2772.1 btr; Transcriptional regulatory protein btr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D PDMSB3_2866 iscR; DNA-binding transcriptional repressor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D PDMSB3_1918 nsrR; HTH-type transcriptional regulator NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D PDMSB3_0020.2 DNA-binding transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D PDMSB3_0022.2 DNA-binding transcriptional regulator, ArsR family (modular protein) K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D PDMSB3_3150.1 Putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D PDMSB3_3327 putative transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D PDMSB3_2087.1 bigR; Biofilm growth-associated repressor K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D PDMSB3_3013 aroK; Shikimate kinase K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator D PDMSB3_3784 Transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D PDMSB3_0313 BirA, biotin-(Acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D PDMSB3_3750 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D PDMSB3_0790.1 Propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D PDMSB3_1901.1 Propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D PDMSB3_1605.1 DNA-directed RNA polymerase specialized sigma subunit K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D PDMSB3_1797 putative transcription regulator containing HTH domain K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D PDMSB3_0623.1 Transcriptional activator of acetoin/glycerol metabolism K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D PDMSB3_2034.1 Transcriptional activator of acetoin/glycerol metabolism K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D PDMSB3_3140.1 acoR; Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D PDMSB3_3142.1 Transcriptional activator of acetoin/glycerol metabolism K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D PDMSB3_0759.1 norR; DNA-binding transcriptional activator K12266 norR; anaerobic nitric oxide reductase transcription regulator D PDMSB3_1655.1 nifA; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein D PDMSB3_0202.1 modE; Molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein D PDMSB3_1252 Molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein D PDMSB3_1617.1 modE; Molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein D PDMSB3_1913.1 Molybdenum-binding protein K02019 modE; molybdate transport system regulatory protein D PDMSB3_2038.1 dauR; Transcriptional regulator DauR K21829 dauR; D-arginine utilization repressor D PDMSB3_4286 putA; fused DNA-binding transcriptional regulator; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D PDMSB3_2187 rcoM; Heme-containing CO-sensing transcriptional regulator RcoM 1 K21696 rcoM; LytTR family transcriptional regulator, CO-responsive transcriptional regulator RcoM D PDMSB3_2047 Stress-induced morphogen K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D PDMSB3_0007.1 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0027 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0042.3 Chromosome partitioning protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0159.2 Nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0218.2 ParB, partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_2794 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_4304 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0575 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D PDMSB3_2979 Transcription elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D PDMSB3_0747 pyrR; Pyrimidine operon regulatory protein / Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D PDMSB3_2757 Prophage CP4-57 regulatory protein (modular protein) K07733 alpA; prophage regulatory protein D PDMSB3_0114.1 Transcriptional regulator K07734 paiB; transcriptional regulator D PDMSB3_0745 yqgE; hypothetical protein K07735 algH; putative transcriptional regulator D PDMSB3_0142 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D PDMSB3_0713 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D PDMSB3_0626 nrdR; transcriptional repressor of nrd genes K07738 nrdR; transcriptional repressor NrdR D PDMSB3_3899 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:pdio03021] D PDMSB3_1925.1 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PDMSB3_4054 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PDMSB3_4088 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PDMSB3_4087 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PDMSB3_3387 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D PDMSB3_0236.1 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor D PDMSB3_0504.1 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor D PDMSB3_3049.1 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D PDMSB3_3113.1 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D PDMSB3_1947 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D PDMSB3_1300 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PDMSB3_1418.1 ecfG; ECF RNA polymerase sigma factor EcfG K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PDMSB3_1730 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PDMSB3_1887 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PDMSB3_2295.1 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PDMSB3_3211 rpoE; RNA polymerase, sigma 24 (sigma E) factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D PDMSB3_0397 rpoH; RNA polymerase, sigma 32 (sigma H) factor K03089 rpoH; RNA polymerase sigma-32 factor D PDMSB3_0422 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor D PDMSB3_1933.1 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D PDMSB3_4220 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA D PDMSB3_1691 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA D PDMSB3_3470 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB D PDMSB3_4094 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG D PDMSB3_3974 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D PDMSB3_3973 Stringent starvation protein B K03600 sspB; stringent starvation protein B D PDMSB3_3210 Negative regulator of sigma E activity K03597 rseA; sigma-E factor negative regulatory protein RseA D PDMSB3_3209 Negative regulator of sigma E activity K03598 rseB; sigma-E factor negative regulatory protein RseB D PDMSB3_0142 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D PDMSB3_0713 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D PDMSB3_3167 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA D PDMSB3_3383 greB; Transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D PDMSB3_1932 rho; transcription termination factor K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:pdio03019] D PDMSB3_3228 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12] D PDMSB3_1264 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D PDMSB3_3204 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D PDMSB3_1791 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] D PDMSB3_1575.1 Guanyl-specific ribonuclease Sa K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D PDMSB3_3815 rnaSA; Guanyl-specific ribonuclease Sa3 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D PDMSB3_3270 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D PDMSB3_1230 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PDMSB3_2148 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PDMSB3_3720 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D PDMSB3_4086 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D PDMSB3_2845 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PDMSB3_1314 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D PDMSB3_1932 rho; transcription termination factor K03628 rho; transcription termination factor Rho D PDMSB3_0582 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK D PDMSB3_2761 Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PDMSB3_0741 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_1514.1 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_1729 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PDMSB3_2820 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PDMSB3_3152 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D PDMSB3_2741.1 Polyphosphate:ADP phosphotransferase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D PDMSB3_0588 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D PDMSB3_3862 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D PDMSB3_2634 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase K02553 rraA; regulator of ribonuclease activity A D PDMSB3_0418 yhbJ; hypothetical protein; putative nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ D PDMSB3_2911 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:pdio03011] D PDMSB3_3306 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D PDMSB3_2593 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PDMSB3_4074 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PDMSB3_4055 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D PDMSB3_4062 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PDMSB3_1889 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D PDMSB3_4084 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PDMSB3_4065 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PDMSB3_3762 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PDMSB3_4081 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PDMSB3_4056 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PDMSB3_4085 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PDMSB3_4057 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PDMSB3_4066 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PDMSB3_1313 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D PDMSB3_3280 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D PDMSB3_4070 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PDMSB3_1891 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D PDMSB3_4076 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PDMSB3_3608 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D PDMSB3_0232.1 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D PDMSB3_4254 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D PDMSB3_4092 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PDMSB3_4077 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D PDMSB3_4080 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PDMSB3_4079 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D PDMSB3_4067 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PDMSB3_4064 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PDMSB3_1892 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D PDMSB3_4090 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D PDMSB3_4093 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PDMSB3_4089 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D PDMSB3_3763 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PDMSB3_4069 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PDMSB3_4060 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D PDMSB3_4072 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D PDMSB3_4053 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D PDMSB3_4063 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D PDMSB3_3277 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D PDMSB3_3052 rplT; 50S ribosomal protein L20, also posttranslational autoregulator K02887 RP-L20; large subunit ribosomal protein L20 D PDMSB3_3867 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D PDMSB3_4075 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PDMSB3_4078 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PDMSB3_4068 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PDMSB3_3866 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D PDMSB3_3546 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D PDMSB3_4071 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PDMSB3_4061 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D PDMSB3_1927 rpmE; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D PDMSB3_3220 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D PDMSB3_3547 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D PDMSB3_3053 rpmI; 50S ribosomal subunit protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D PDMSB3_0410 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D PDMSB3_RRNA1-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA1-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA4-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA6-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA7-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA9-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA2-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA2-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA5-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA5-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA8-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA8-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA3-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA3-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA4-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA6-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA7-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA9-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 03009 Ribosome biogenesis [BR:pdio03009] D PDMSB3_3204 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D PDMSB3_1052.1 Serine/threonine protein kinase involved in cell cycle control K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PDMSB3_3270 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D PDMSB3_3203 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase D PDMSB3_3865 putative GTP-binding protein (Obg) K03979 obgE; GTPase [EC:3.6.5.-] D PDMSB3_0142 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D PDMSB3_0713 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D PDMSB3_1691 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA D PDMSB3_3470 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB D PDMSB3_4094 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG D PDMSB3_3532 Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D PDMSB3_0517 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D PDMSB3_0110 Ribosomal RNA small subunit methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D PDMSB3_3553 tRNA/rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D PDMSB3_0405 yhhF; putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D PDMSB3_3813 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D PDMSB3_4306 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D PDMSB3_3898 mraW; S-adenosyl-dependent methyltransferase activity on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D PDMSB3_0208 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D PDMSB3_3223 putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D PDMSB3_1792 rlmB; 23S rRNA (Gm2251)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D PDMSB3_3164 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D PDMSB3_1266 ybeA; conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D PDMSB3_0144 rlmI; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D PDMSB3_1383 rlmJ; Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D PDMSB3_0537 putative N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D PDMSB3_2827 yfgB; putative Fe-S containing enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D PDMSB3_1949 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D PDMSB3_1688 Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D PDMSB3_3227 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D PDMSB3_1951 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D PDMSB3_3567 rluE; Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D PDMSB3_2597 Pseudouridine synthase family protein (fragment) K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D PDMSB3_2623 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D PDMSB3_3164.1 Acetyltransferase, ribosomal protein N-acetylase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D PDMSB3_3279 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D PDMSB3_1958 yliG; putative AdoMet-dependent methyltransferase, UPF0004 family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D PDMSB3_3846 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D PDMSB3_2610 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D PDMSB3_2803 conserved protein of unknown function K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D PDMSB3_3228 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12] D PDMSB3_1264 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D PDMSB3_0746 yqgF; Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D PDMSB3_0057 dbpA; ATP-dependent RNA helicase, specific for 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D PDMSB3_3272 rsgA; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D PDMSB3_2821 der; GTPase involved in ribosome synthesis and maintenance K03977 engA; GTPase D PDMSB3_2819 hflX; putative GTPase K03665 hflX; GTPase D PDMSB3_3676 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PDMSB3_3385 bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (fragment) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D PDMSB3_3386 protein of unknown function K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D PDMSB3_1693 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D PDMSB3_1690 yhbC; conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP D PDMSB3_3249 conserved protein of unknown function K14761 rlbA; ribosome-associated protein D PDMSB3_1267 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein D PDMSB3_3742 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor D PDMSB3_3165 putative RNA-binding protein containing KH domain, possibly ribosomal protein K07574 yhbY; RNA-binding protein D PDMSB3_3268 conserved protein of unknown function K09889 yjgA; ribosome-associated protein D PDMSB3_0421 hpf; Ribosome hibernation promoting factor K05808 hpf; ribosome hibernation promoting factor D PDMSB3_3932 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase D PDMSB3_3221 putative metal-binding protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:pdio03016] D PDMSB3_0472.1 protein of unknown function K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D PDMSB3_1575.1 Guanyl-specific ribonuclease Sa K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D PDMSB3_3815 rnaSA; Guanyl-specific ribonuclease Sa3 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D PDMSB3_4152 cca; fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D PDMSB3_2639 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PDMSB3_3861 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PDMSB3_3556 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PDMSB3_3799 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PDMSB3_0895 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PDMSB3_3125 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D PDMSB3_0293 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PDMSB3_2857 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D PDMSB3_0494 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PDMSB3_3120 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PDMSB3_3055 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PDMSB3_0941 serS; seryl-tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PDMSB3_2658 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PDMSB3_3096 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PDMSB3_2824 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PDMSB3_3051 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PDMSB3_3050 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PDMSB3_3759 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PDMSB3_2835 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PDMSB3_3020.1 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PDMSB3_3758 dtd; D-tyr-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D PDMSB3_0774.1 Alanyl-tRNA synthetase domain protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D PDMSB3_3985 hitA; Protein HitA K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PDMSB3_4370 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PDMSB3_3483 yggH; tRNA (m7G46) methyltransferase, SAM-dependent K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D PDMSB3_0169.1 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PDMSB3_1694 truB; tRNA pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PDMSB3_1646.1 nifS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_1656.1 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_2865 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_3676 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PDMSB3_0593 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D PDMSB3_4385 trmE; GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D PDMSB3_4307 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PDMSB3_0531.1 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D PDMSB3_4391 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D PDMSB3_MISCRNA20 RNaseP_bact_a K01978 rnpB; RNase P catalytic RNA component D PDMSB3_3390 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D PDMSB3_3838 Exoribonuclease R K01147 rnb; exoribonuclease II [EC:3.1.13.1] D PDMSB3_2435 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D PDMSB3_3940 yjjK; fused putative transporter subunits of ABC superfamily: ATP-binding components K06020 ettA; energy-dependent translational throttle protein EttA D PDMSB3_0526 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D PDMSB3_0525 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D PDMSB3_1515 Glycoside hydrolase, end-alpha-1,4-polygalactosaminidase K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D PDMSB3_1231 gluQ; Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D PDMSB3_2433 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D PDMSB3_1859 yjbN; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D PDMSB3_3749 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D PDMSB3_1957 dusC; tRNA-dihydrouridine(16) synthase K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D PDMSB3_3740 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D PDMSB3_2666 yfhQ; putative methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D PDMSB3_3278 trmD; tRNA (guanine-1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D PDMSB3_0367 yibK; putative rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D PDMSB3_2577 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family D PDMSB3_0530 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D PDMSB3_4147 ydaO; putative C32 tRNA thiolase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D PDMSB3_3098 tusA; Sulfur carrier protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PDMSB3_1659.1 iscA; FeS cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein D PDMSB3_2863 iscA; iron-binding protein, believed to be involved in Fe-S protein formation or repair K13628 iscA; iron-sulfur cluster assembly protein D PDMSB3_2062 Folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D PDMSB3_4334 mnmC; tRNA (mnm(5)s(2)U34)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D PDMSB3_0552 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D PDMSB3_0114 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PDMSB3_0116 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D PDMSB3_0115 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PDMSB3_0479 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D PDMSB3_3619 yjeS; putative Fe-S electron transport protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D PDMSB3_0530.1 Selenophosphate-dependent tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D PDMSB3_0551 tgt; queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D PDMSB3_2655 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D PDMSB3_2624 Universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D PDMSB3_0230.1 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D PDMSB3_3620 yjeE; ATPase with strong ADP affinity K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D PDMSB3_3625 ygdL; conserved hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D PDMSB3_1791 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] D PDMSB3_1314 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:pdio03012] D PDMSB3_1692 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D PDMSB3_3054 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D PDMSB3_2613 yheS; fused putative transporter subunits of ABC superfamily: ATP-binding components K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D PDMSB3_3160.1 yheS; fused putative transporter subunits of ABC superfamily: ATP-binding components K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D PDMSB3_2592 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts D PDMSB3_4082 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu D PDMSB3_4096 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu D PDMSB3_3570 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G D PDMSB3_4083 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G D PDMSB3_0539.1 selB; selenocysteinyl-tRNA-specific translation factor K03833 selB; selenocysteine-specific elongation factor D PDMSB3_3949 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1 D PDMSB3_2590 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D PDMSB3_3950 prmC; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D PDMSB3_0409 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D PDMSB3_2042.1 infA; Translation initiation factor IF-1 2 K02518 infA; translation initiation factor IF-1 D PDMSB3_4058 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D PDMSB3_3196 efp; Elongation factor P K02356 efp; elongation factor P D PDMSB3_2856 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D PDMSB3_0080.1 prfC; peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3 D PDMSB3_1672 yaeJ; conserved hypothetical protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:pdio03110] D PDMSB3_3563 clpA; ATP-binding protease component K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D PDMSB3_1919 clpB; protein disaggregation chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D PDMSB3_0261.2 clpC; Negative regulator of genetic competence ClpC/MecB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D PDMSB3_2472 clpB; Chaperone protein ClpB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D PDMSB3_2030 clpX; ATP-dependent Clp protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D PDMSB3_0140 hslU; molecular chaperone and ATPase component of HslUV protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D PDMSB3_1192 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG D PDMSB3_0582 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK D PDMSB3_2761 Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PDMSB3_1660.1 hscA; DnaK-like molecular chaperone specific for IscU K04044 hscA; molecular chaperone HscA D PDMSB3_2861 hscA; DnaK-like molecular chaperone specific for IscU K04044 hscA; molecular chaperone HscA D PDMSB3_3267.1 hscC; Chaperone protein HscC K04045 hscC; molecular chaperone HscC D PDMSB3_3958 Molecular chaperone K04046 yegD; hypothetical chaperone protein D PDMSB3_0741 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_1514.1 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_0583 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ D PDMSB3_0746.1 cbpA; curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK K05516 cbpA; curved DNA-binding protein D PDMSB3_2862 hscB; Co-chaperone protein HscB homolog K04082 hscB; molecular chaperone HscB D PDMSB3_2842 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D PDMSB3_0580 grpE; Protein GrpE K03687 GRPE; molecular chaperone GrpE D PDMSB3_0258.2 HSP20 family protein K13993 HSP20; HSP20 family protein D PDMSB3_0281.2 conserved protein of unknown function K13993 HSP20; HSP20 family protein D PDMSB3_0670.1 Molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein D PDMSB3_2493 Heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D PDMSB3_0577 hslR; Heat shock protein 15 homolog K04762 hslR; ribosome-associated heat shock protein Hsp15 D PDMSB3_0740 groES; chaperone Hsp10, affects cell division K04078 groES; chaperonin GroES D PDMSB3_1515.1 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES D PDMSB3_3208 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107] D PDMSB3_3670 putative periplasmic serine endoprotease DegP-like K04771 degP; serine protease Do [EC:3.4.21.107] D PDMSB3_0810.1 ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PDMSB3_2454 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PDMSB3_3163 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D PDMSB3_2477 atpB; ATP synthase subunit a 2 K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PDMSB3_4301 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D PDMSB3_3107.1 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein D PDMSB3_0364 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB D PDMSB3_3186 conserved exported protein of unknown function K09796 pccA; periplasmic copper chaperone A D PDMSB3_0438.1 putative Subtilisin K14645 K14645; serine protease [EC:3.4.21.-] D PDMSB3_2661 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D PDMSB3_2662 ppiB; peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D PDMSB3_2034 Peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D PDMSB3_0182.1 Peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D PDMSB3_2607.1 Peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D PDMSB3_3544 Peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D PDMSB3_2802 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D PDMSB3_2046 putative parvulin-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D PDMSB3_0515 surA; Chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D PDMSB3_1773.1 Thiol-disulfide isomerase-like thioredoxin K03671 TXN; thioredoxin D PDMSB3_1934 trxA; thioredoxin 1 K03671 TXN; thioredoxin D PDMSB3_3624 Thioredoxin K05838 ybbN; putative thioredoxin D PDMSB3_0363 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D PDMSB3_3951 Uncharacterized monothiol glutaredoxin ycf64-like K07390 grxD; monothiol glutaredoxin D PDMSB3_0117.2 Thiol-disulfide isomerase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D PDMSB3_0291 dsbA; Thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D PDMSB3_3340 dsbB; Disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D PDMSB3_0090.2 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D PDMSB3_3930 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D PDMSB3_4051 dsbD; Thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] C 04131 Membrane trafficking [BR:pdio04131] D PDMSB3_2828 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PDMSB3_3367 mneA; putative manganese exporter K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D PDMSB3_1775.1 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PDMSB3_3809 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PDMSB3_0361 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_2173.1 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (modular protein) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_3681 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40] D PDMSB3_1192 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:pdio03051] D PDMSB3_1192 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:pdio03032] D PDMSB3_1163 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_2678 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_2032 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D PDMSB3_2198.1 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_2495.1 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_4335 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_3049 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D PDMSB3_3305 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta D PDMSB3_0001 chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator (fragment) K02313 dnaA; chromosomal replication initiator protein D PDMSB3_1893 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D PDMSB3_0234.1 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D PDMSB3_0437 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PDMSB3_1233 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PDMSB3_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PDMSB3_0863 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PDMSB3_3797 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PDMSB3_2066 DNA polymerase III, delta'' subunit (fragment) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PDMSB3_3378 Exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PDMSB3_1936 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PDMSB3_2578 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D PDMSB3_0221.1 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] D PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PDMSB3_0590 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D PDMSB3_3314 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D PDMSB3_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D PDMSB3_1181 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D PDMSB3_1180 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D PDMSB3_1942.1 DNA topoisomerase IB (poxvirus type) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PDMSB3_0103 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:pdio03036] D PDMSB3_1163 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_2678 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_3204 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] D PDMSB3_1775.1 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PDMSB3_1925.1 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PDMSB3_0070.1 DNA-binding protein Bv3F K03746 hns; DNA-binding protein H-NS D PDMSB3_0202 DNA-binding protein Bv3F K03746 hns; DNA-binding protein H-NS D PDMSB3_0275.1 conserved protein of unknown function K03746 hns; DNA-binding protein H-NS D PDMSB3_2096.1 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS D PDMSB3_4245 Histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D PDMSB3_2032 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D PDMSB3_2198.1 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_2495.1 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_4335 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_3049 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D PDMSB3_3305 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta D PDMSB3_0746.1 cbpA; curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK K05516 cbpA; curved DNA-binding protein D PDMSB3_0747.1 cbpM; modulator of CbpA co-chaperone K18997 cbpM; chaperone modulatory protein CbpM D PDMSB3_0001 chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator (fragment) K02313 dnaA; chromosomal replication initiator protein D PDMSB3_0001.2 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D PDMSB3_0558 conserved protein of unknown function K04047 dps; starvation-inducible DNA-binding protein D PDMSB3_3750 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D PDMSB3_1729 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PDMSB3_2820 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein D PDMSB3_1524 argP; HTH-type transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D PDMSB3_0204 bkdR; Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_0262 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_0614 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_1159.1 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_2990.1 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_3038 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_3284 dadR; transcriptional regulator for dadAX gene cluster (AsnC family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_3631 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_4117 lrp; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_4322 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_4373 bkdR; Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D PDMSB3_2603 smc; Chromosome partition protein Smc K03529 smc; chromosome segregation protein D PDMSB3_0891 scpA; Segregation and condensation protein A K05896 scpA; segregation and condensation protein A D PDMSB3_1687 Segregation and condensation protein B K06024 scpB; segregation and condensation protein B D PDMSB3_3885 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA D PDMSB3_2844 ftsB; Cell division protein FtsB K05589 ftsB; cell division protein FtsB D PDMSB3_0862.1 penA; putative peptidoglycan D,D-transpeptidase PenA K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PDMSB3_3896 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D PDMSB3_0935 ftsK; DNA translocase FtsK 2 K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D PDMSB3_1221 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D PDMSB3_3897 ftsL; Cell division protein FtsL K03586 ftsL; cell division protein FtsL D PDMSB3_3886 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D PDMSB3_3891 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_3884 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ D PDMSB3_0872 Cell division protein ZapA K09888 zapA; cell division protein ZapA D PDMSB3_3875 zapD; Cell division protein ZapD K18778 zapD; cell division protein ZapD D PDMSB3_1706 zapE; Cell division protein ZapE K06916 zapE; cell division protein ZapE D PDMSB3_3621 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D PDMSB3_0157 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0247.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1058.1 putative Co/Zn/Cd efflux system membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1713.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1876.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_2841.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_3661 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0954 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D PDMSB3_0955 minD; cell division inhibitor, a membrane ATPase,activates minC K03609 minD; septum site-determining protein MinD D PDMSB3_0956 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor D PDMSB3_0134 slmA; Nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D PDMSB3_0123 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_1729.1 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_1971.1 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_0122 Rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D PDMSB3_0121 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D PDMSB3_0119 mrdB; cell wall shape-determining protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_0006.1 Chromosome (plasmid) partitioning protein ParA K03496 parA; chromosome partitioning protein D PDMSB3_0041.3 Chromosome partitioning protein K03496 parA; chromosome partitioning protein D PDMSB3_0211.2 Chromosome partitioning protein K03496 parA; chromosome partitioning protein D PDMSB3_0219.2 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D PDMSB3_0888 putative ParA family ATPase K03496 parA; chromosome partitioning protein D PDMSB3_2295 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein D PDMSB3_4305 conserved protein of unknown function K03496 parA; chromosome partitioning protein D PDMSB3_0007.1 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0027 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0042.3 Chromosome partitioning protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0159.2 Nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0218.2 ParB, partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_2794 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_4304 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_1181 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D PDMSB3_1180 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D PDMSB3_4307 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D PDMSB3_4306 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D PDMSB3_0145 xerC; site-specific tyrosine recombinase K03733 xerC; integrase/recombinase XerC D PDMSB3_1646 xerC; Tyrosine recombinase XerC 2 K04763 xerD; integrase/recombinase XerD D PDMSB3_1653 xerC; Tyrosine recombinase XerC 2 K04763 xerD; integrase/recombinase XerD D PDMSB3_3278.1 xerC; Tyrosine recombinase XerC 2 K04763 xerD; integrase/recombinase XerD D PDMSB3_3287.1 xerC; Tyrosine recombinase XerC 2 K04763 xerD; integrase/recombinase XerD D PDMSB3_3617 xerD; site-specific tyrosine recombinase K04763 xerD; integrase/recombinase XerD D PDMSB3_0897 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D PDMSB3_4049 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:pdio03400] D PDMSB3_2851.1 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PDMSB3_3618 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PDMSB3_0209.1 phrA; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PDMSB3_3927 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D PDMSB3_1411.1 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D PDMSB3_0416 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D PDMSB3_1212 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D PDMSB3_1925.1 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PDMSB3_2526 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PDMSB3_3877 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PDMSB3_3560 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PDMSB3_4359 ada; Methylphosphotriester-DNA--protein-cysteine S-methyltransferase / Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PDMSB3_0870.1 Uracil-DNA glycosylase family domain protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PDMSB3_2622 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PDMSB3_3022.1 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PDMSB3_2657 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D PDMSB3_4358 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D PDMSB3_4252 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D PDMSB3_0415 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D PDMSB3_0129 Exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] D PDMSB3_0878.1 Exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] D PDMSB3_2897 Exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] D PDMSB3_2855 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D PDMSB3_0221.1 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] D PDMSB3_0435 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D PDMSB3_1478 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A D PDMSB3_3375 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A D PDMSB3_1389 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B D PDMSB3_3193 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C D PDMSB3_3094 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PDMSB3_3246 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D PDMSB3_4088 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D PDMSB3_4087 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D PDMSB3_4054 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D PDMSB3_3387 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D PDMSB3_1982 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D PDMSB3_2800 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D PDMSB3_0594 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D PDMSB3_3599 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D PDMSB3_0226.1 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D PDMSB3_1233 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D PDMSB3_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D PDMSB3_0863 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D PDMSB3_3797 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D PDMSB3_2066 DNA polymerase III, delta'' subunit (fragment) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D PDMSB3_3378 Exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D PDMSB3_1936 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D PDMSB3_0437 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PDMSB3_1162 vsr; DNA mismatch endonuclease of very short patch repair K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] D PDMSB3_1669 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D PDMSB3_1668 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D PDMSB3_1130 protein of unknown function K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D PDMSB3_1670 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D PDMSB3_3701 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D PDMSB3_3754 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA D PDMSB3_3755 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D PDMSB3_3753 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D PDMSB3_4290 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D PDMSB3_1890 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N D PDMSB3_0002.4 Metallophosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 D PDMSB3_2616 radA; repair protein radA homolog K04485 radA; DNA repair protein RadA/Sms D PDMSB3_0553 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D PDMSB3_3202 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D PDMSB3_1938 recR; gap repair protein K06187 recR; recombination protein RecR D PDMSB3_0573 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D PDMSB3_1244 rdgC; Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC D PDMSB3_1965 ku; Non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku D PDMSB3_1966 ligD; 3'-phosphoesterase / DNA ligase D / DNA repair polymerase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D PDMSB3_3314 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D PDMSB3_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D PDMSB3_1942.1 DNA topoisomerase IB (poxvirus type) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PDMSB3_2032 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D PDMSB3_2198.1 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_2495.1 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_4335 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D PDMSB3_3750 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D PDMSB3_3049 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D PDMSB3_3305 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta D PDMSB3_4086 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D PDMSB3_0070.1 DNA-binding protein Bv3F K03746 hns; DNA-binding protein H-NS D PDMSB3_0202 DNA-binding protein Bv3F K03746 hns; DNA-binding protein H-NS D PDMSB3_0275.1 conserved protein of unknown function K03746 hns; DNA-binding protein H-NS D PDMSB3_2096.1 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS D PDMSB3_4245 Histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D PDMSB3_1062.1 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PDMSB3_1872 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D PDMSB3_2227.1 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PDMSB3_0010.2 conserved protein of unknown function K14160 imuA; protein ImuA D PDMSB3_1375 conserved protein of unknown function K14160 imuA; protein ImuA D PDMSB3_0009.2 Protein ImuB K14161 imuB; protein ImuB D PDMSB3_1376 Nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB D PDMSB3_0008.2 dnaE; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PDMSB3_1377 dnaE; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PDMSB3_3700 recX; Regulatory protein RecX K03565 recX; regulatory protein D PDMSB3_4276 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PDMSB3_2807 yoaA; putative ATP-dependent DNA helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PDMSB3_1951.1 Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D PDMSB3_2609.1 Helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D PDMSB3_1384.1 Ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PDMSB3_3854 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PDMSB3_3853 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:pdio03029] D PDMSB3_3976 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D PDMSB3_1692 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D PDMSB3_3054 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D PDMSB3_2592 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts D PDMSB3_4082 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu D PDMSB3_4096 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu D PDMSB3_3570 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G D PDMSB3_4083 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G D PDMSB3_3203 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase D PDMSB3_3759 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PDMSB3_3799 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PDMSB3_0494 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D PDMSB3_0293 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PDMSB3_0126 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D PDMSB3_3339 Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D PDMSB3_0127 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D PDMSB3_0125 gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D PDMSB3_3343.1 DNA/RNA endonuclease G, NUC1 K01173 ENDOG; endonuclease G, mitochondrial D PDMSB3_0437 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PDMSB3_2585 bamA; Outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D PDMSB3_0582 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK D PDMSB3_2761 Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PDMSB3_0580 grpE; Protein GrpE K03687 GRPE; molecular chaperone GrpE D PDMSB3_0741 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_1514.1 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_0740 groES; chaperone Hsp10, affects cell division K04078 groES; chaperonin GroES D PDMSB3_1515.1 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES D PDMSB3_0583 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ D PDMSB3_1646.1 nifS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_1656.1 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_2865 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_2862 hscB; Co-chaperone protein HscB homolog K04082 hscB; molecular chaperone HscB D PDMSB3_3951 Uncharacterized monothiol glutaredoxin ycf64-like K07390 grxD; monothiol glutaredoxin D PDMSB3_0897 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D PDMSB3_0381 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D PDMSB3_0374 ctaG; Cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D PDMSB3_0380 conserved membrane protein of unknown function K02259 COX15; heme a synthase [EC:1.17.99.9] D PDMSB3_4389 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PDMSB3_0378 SURF1-like protein K14998 SURF1; surfeit locus 1 family protein D PDMSB3_0382 conserved exported protein of unknown function K07152 SCO1; protein SCO1 D PDMSB3_3185 conserved protein of unknown function K07152 SCO1; protein SCO1 D PDMSB3_1192 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:pdio02000] D PDMSB3_1235 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D PDMSB3_2902.1 ABC transporter ATP-binding protein K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-] D PDMSB3_2120 apxIB; Toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB D PDMSB3_2945.1 ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB D PDMSB3_2657.1 ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D PDMSB3_0510 atm; ATM1-type heavy metal exporter K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D PDMSB3_3176 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D PDMSB3_3182 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D PDMSB3_2542 Cyclic peptide transporter K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D PDMSB3_2883.1 ABC-type siderophore export system, fused ATPase and permease components K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D PDMSB3_4012 ABC-type uncharacterized transport system, permease and ATPase component K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D PDMSB3_1178 uup-A; ABC transporter ATP-binding protein uup-1 K15738 uup; ABC transport system ATP-binding/permease protein D PDMSB3_0271 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D PDMSB3_1873 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D PDMSB3_1874 cysT; sulfate transport protein (ABC superfamily, membrane) K02046 cysU; sulfate/thiosulfate transport system permease protein D PDMSB3_1875 Sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D PDMSB3_1876 cysA; sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D PDMSB3_0205.1 modA; molybdate transporter subunit; periplasmic-binding component of ABC superfamily K02020 modA; molybdate transport system substrate-binding protein D PDMSB3_1619.1 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) K02020 modA; molybdate transport system substrate-binding protein D PDMSB3_1916.1 ABC-type molybdate transport system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein D PDMSB3_0204.1 modB; molybdate transporter subunit; membrane component of ABC superfamily K02018 modB; molybdate transport system permease protein D PDMSB3_1620.1 modB; molybdate transporter subunit; membrane component of ABC superfamily K02018 modB; molybdate transport system permease protein D PDMSB3_1917.1 ABC-type spermidine/putrescine transport system, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D PDMSB3_0203.1 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D PDMSB3_1618.1 ABC-type sulfate/molybdate transport system, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D PDMSB3_0331 tauA; taurine transporter subunit; periplasmic-binding component of ABC superfamily K15551 tauA; taurine transport system substrate-binding protein D PDMSB3_0333 tauC; taurine transporter subunit; membrane component of ABC superfamily K15552 tauC; taurine transport system permease protein D PDMSB3_0332 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D PDMSB3_0003.1 ssuA; Putative aliphatic sulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0413.1 Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0661.1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0771.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1382 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1445 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1504 ABC transporter, substrate-binding protein, aliphatic sulfonates family K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_1940 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2161 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2166 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2171 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_2923.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K15553 ssuA; sulfonate transport system substrate-binding protein D PDMSB3_0411.1 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein D PDMSB3_0659.1 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1503 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1845 ssuC; alkanesulfonate transport protein (ABC superfamily, membrane) K15554 ssuC; sulfonate transport system permease protein D PDMSB3_1942 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2159 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2168 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_2925.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K15554 ssuC; sulfonate transport system permease protein D PDMSB3_0412.1 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_0660.1 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1502 ssuB; Aliphatic sulfonates import ATP-binding protein SsuB 2 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1846 ssuB; Aliphatic sulfonates import ATP-binding protein SsuB 1 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1941 conserved protein of unknown function K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2160 tauB; Taurine import ATP-binding protein TauB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2167 nrtD; Nitrate transport ATP-binding protein NrtD K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2175 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_2924.1 Putative ATP-binding protein BruAb2_1123 K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D PDMSB3_1220.1 Ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D PDMSB3_2069.1 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein D PDMSB3_1219.1 fbpB; Fe(3+)-transport system permease protein SfuB K02011 afuB; iron(III) transport system permease protein D PDMSB3_2070.1 ABC Fe3+ siderophore transporter, inner membrane subunit K02011 afuB; iron(III) transport system permease protein D PDMSB3_1218.1 fbpC; Fe(3+) ions import ATP-binding protein FbpC 1 K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PDMSB3_2071.1 fbpC; Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PDMSB3_2215.1 potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily K11073 potF; putrescine transport system substrate-binding protein D PDMSB3_2404 potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily K11073 potF; putrescine transport system substrate-binding protein D PDMSB3_2218.1 potI; putrescine transporter subunit: membrane component of ABC superfamily K11074 potI; putrescine transport system permease protein D PDMSB3_2401 potI; putrescine transporter subunit: membrane component of ABC superfamily K11074 potI; putrescine transport system permease protein D PDMSB3_2217.1 potH; putrescine transporter subunit: membrane component of ABC superfamily K11075 potH; putrescine transport system permease protein D PDMSB3_2402 potH; putrescine transporter subunit: membrane component of ABC superfamily K11075 potH; putrescine transport system permease protein D PDMSB3_2216.1 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D PDMSB3_2403 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D PDMSB3_0120.1 ABC transporter, periplasmic spermidine putrescine-binding protein potD (TC_3.A.1.11.1) K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0338 ABC-type Fe3+ transport system, periplasmic component K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0357.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0907 ABC spermidine/putrescine transporter, periplasmic ligand binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0922.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_1407.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_1607.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_1751.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_2129.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_2644.1 Spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_2962 ABC-type Fe3+ transport system, periplasmic component K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D PDMSB3_0122.1 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_0340 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_0354.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_0905 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_1405.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_1603.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_1753.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_2134.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_2640.1 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_2963 ABC-type sulfate transport system, permease component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_2964 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D PDMSB3_0121.1 Spermidine Putrescine ABC transporter permease component potB (TC_3.A.1.11.1) K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_0339 ABC-type uncharacterized transport system, permease component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_0355.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_0906 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_1406.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_1602.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_1752.1 Putrescine transport system permease protein potH K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_2133.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_2639.1 ABC-type spermidine/putrescine transport system, permease component I K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D PDMSB3_0119.1 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_0341 cysA; Sulfate/thiosulfate import ATP-binding protein CysA 2 K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_0356.1 fbpC; Fe(3+) ions import ATP-binding protein FbpC K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_0908 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_1404.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_1599.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_1750.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_2132.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_2638.1 potA; Spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_2965 cysA; Sulfate/thiosulfate import ATP-binding protein CysA 2 K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D PDMSB3_1175.1 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein K11081 phnS; 2-aminoethylphosphonate transport system substrate-binding protein D PDMSB3_1178.1 2-aminoethylphosphonate ABC transporter permease protein II (TC 3.A.1.9.1) K11082 phnV; 2-aminoethylphosphonate transport system permease protein D PDMSB3_1177.1 2-aminoethylphosphonate ABC transporter permease protein I (TC 3.A.1.9.1) K11083 phnU; 2-aminoethylphosphonate transport system permease protein D PDMSB3_1176.1 potA; Spermidine/putrescine import ATP-binding protein PotA K11084 phnT; 2-aminoethylphosphonate transport system ATP-binding protein D PDMSB3_1479.1 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_1505.1 ABC-type proline/glycine betaine transport system, periplasmic component K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_1509.1 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_2562.1 Choline ABC transporter, periplasmic binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_2774.1 ABC-type proline/glycine betaine transport system, periplasmic component K02002 proX; glycine betaine/proline transport system substrate-binding protein D PDMSB3_1477.1 gbuB; Glycine betaine/carnitine transport permease protein GbuB K02001 proW; glycine betaine/proline transport system permease protein D PDMSB3_2775.1 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) K02001 proW; glycine betaine/proline transport system permease protein D PDMSB3_1476.1 proV; glycine betaine transporter subunit; ATP-binding compoent of ABC superfamily K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D PDMSB3_2776.1 proV; glycine betaine transporter subunit; ATP-binding compoent of ABC superfamily K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D PDMSB3_0047.1 yehW; putative transporter subunit: permease component of ABC superfamily transporter K05846 opuBD; osmoprotectant transport system permease protein D PDMSB3_0048.1 osmV; Osmoprotectant import ATP-binding protein OsmV K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D PDMSB3_0739.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D PDMSB3_1544.1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D PDMSB3_1728.1 Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D PDMSB3_2327 putative binding protein (ABC superfamily, peri_bind) K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D PDMSB3_2967.1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D PDMSB3_0733.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D PDMSB3_1149 ABC-type anion transport system, duplicated permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D PDMSB3_1543.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D PDMSB3_1719.1 Urea carboxylase-related ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D PDMSB3_2324 putative permease protein (ABC superfamily, membrane) K02050 ABC.SN.P; NitT/TauT family transport system permease protein D PDMSB3_2964.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D PDMSB3_1150 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D PDMSB3_1545.1 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D PDMSB3_1718.1 Urea carboxylase-related ABC transporter, ATPase protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D PDMSB3_2325 putative transport protein (ABC superfamily, atp_bind) K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D PDMSB3_2966.1 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D PDMSB3_3644 malK; fused maltose transport subunit, ATP-binding component of ABC superfamily; regulatory protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_0929 msmX; Maltodextrin import ATP-binding protein MsmX K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_1050.1 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_3002.1 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_3338.1 malK; Trehalose/maltose import ATP-binding protein MalK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_0926 putative sugar-binding periplasmic protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D PDMSB3_1047.1 ABC-type sugar transport system, periplasmic component K17315 gtsA; glucose/mannose transport system substrate-binding protein D PDMSB3_2140 putative sugar-binding periplasmic protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D PDMSB3_0927 Permease component of ABC-type sugar transporter K17316 gtsB; glucose/mannose transport system permease protein D PDMSB3_1048.1 Permease of ABC sugar transporter K17316 gtsB; glucose/mannose transport system permease protein D PDMSB3_0928 ABC-type sugar transport system, permease component K17317 gtsC; glucose/mannose transport system permease protein D PDMSB3_1049.1 ABC-type sugar transport system, permease component K17317 gtsC; glucose/mannose transport system permease protein D PDMSB3_3828 araF; L-arabinose transporter subunit; periplasmic-binding component of ABC superfamily K10537 araF; L-arabinose transport system substrate-binding protein D PDMSB3_3826 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K10538 araH; L-arabinose transport system permease protein D PDMSB3_3827 araG; fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D PDMSB3_0433.1 xylF; D-xylose transporter subunit; periplasmic-binding component of ABC superfamily K10543 xylF; D-xylose transport system substrate-binding protein D PDMSB3_2692.1 ABC-type xylose transport system, periplasmic component K10543 xylF; D-xylose transport system substrate-binding protein D PDMSB3_0435.1 xylH; D-xylose transporter subunit; membrane component of ABC superfamily K10544 xylH; D-xylose transport system permease protein D PDMSB3_2694.1 ABC-type xylose transport system, permease component K10544 xylH; D-xylose transport system permease protein D PDMSB3_0434.1 xylG; fused D-xylose transporter subunits of ABC superfamily: ATP-binding components K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D PDMSB3_2693.1 frcA; Fructose import ATP-binding protein FrcA K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D PDMSB3_2291.1 frcA; Fructose import ATP-binding protein FrcA K10554 frcA; fructose transport system ATP-binding protein D PDMSB3_2074.1 Predicted L-rhamnose ABC transporter, substrate-binding component K10559 rhaS; rhamnose transport system substrate-binding protein D PDMSB3_2076.1 Predicted L-rhamnose ABC transporter, transmembrane component 2 K10560 rhaP; rhamnose transport system permease protein D PDMSB3_2075.1 Predicted L-rhamnose ABC transporter, transmembrane component 1 K10561 rhaQ; rhamnose transport system permease protein D PDMSB3_2077.1 rbsA; Ribose import ATP-binding protein RbsA K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_0085.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_0842 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1038 Ribose transport system substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1046 Ribose transport system substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1708.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_1993.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2345 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2802.1 ABC-type sugar transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2829.1 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_2849.1 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein D PDMSB3_0841 Monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D PDMSB3_1048 Ribose transport system permease protein K10440 rbsC; ribose transport system permease protein D PDMSB3_1049 Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K10440 rbsC; ribose transport system permease protein D PDMSB3_1707.1 rbsC; D-ribose transporter subunit; membrane component of ABC superfamily K10440 rbsC; ribose transport system permease protein D PDMSB3_1991.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K10440 rbsC; ribose transport system permease protein D PDMSB3_2343 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K10440 rbsC; ribose transport system permease protein D PDMSB3_2800.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K10440 rbsC; ribose transport system permease protein D PDMSB3_2801.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K10440 rbsC; ribose transport system permease protein D PDMSB3_2826.1 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) K10440 rbsC; ribose transport system permease protein D PDMSB3_0840 rbsA; fused D-ribose transporter subunits of ABC superfamily: ATP-binding components K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_1047 rbsA; Ribose import ATP-binding protein RbsA 1 K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_1706.1 rbsA; Ribose import ATP-binding protein RbsA 2 K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_1992.1 ABC-type sugar transport system, ATPase component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_2344 putative ribose/galactose/methyl galactoside import ATP-binding protein 1 K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_2799.1 ABC-type sugar transport system, ATPase component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_2828.1 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D PDMSB3_0183 ytfQ; putative sugar transporter subunit: periplasmic-binding component of ABC superfamily K23508 ytfQ; galactofuranose transport system substrate-binding protein D PDMSB3_0180 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K23509 ytfT; galactofuranose transport system permease protein D PDMSB3_0181 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K23509 ytfT; galactofuranose transport system permease protein D PDMSB3_0182 ytfR; putative sugar transporter subunit: ATP-binding component of ABC superfamily K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D PDMSB3_3935 ugpB; glycerol-3-phosphate transporter subunit; periplasmic-binding component of ABC superfamily K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D PDMSB3_3936 ugpA; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D PDMSB3_3937 ugpE; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D PDMSB3_3938 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D PDMSB3_3648 ABC-type sugar transport system, periplasmic component K10227 smoE; polyol transport system substrate-binding protein D PDMSB3_3647 Permease component of ABC-type sugar transporter K10228 smoF; polyol transport system permease protein D PDMSB3_3646 ABC-type sugar transport system, permease component K10229 smoG; polyol transport system permease protein D PDMSB3_1737.1 Putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_1743.1 Putative ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_2217 Purine-binding protein BAB2_0673 K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_2415 Purine-binding protein BAB2_0673 K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_2936 Purine-binding protein BAB2_0673 K07335 bmpA; basic membrane protein A and related proteins D PDMSB3_1736.1 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein D PDMSB3_1741.1 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein D PDMSB3_2417 ABC-type uncharacterized transport system, permease component K23535 nupB; general nucleoside transport system permease protein D PDMSB3_1735.1 Putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein D PDMSB3_1740.1 Putative ABC-type transport system, permease component K23536 nupC; general nucleoside transport system permease protein D PDMSB3_2416 tsgC; putative glucose ABC transporter permease protein TsgC13 K23536 nupC; general nucleoside transport system permease protein D PDMSB3_1733.1 ATPase component of uncharacterized ABC-type transporter K23537 nupA; general nucleoside transport system ATP-binding protein D PDMSB3_1742.1 yufO; Uncharacterized ABC transporter ATP-binding protein YufO K23537 nupA; general nucleoside transport system ATP-binding protein D PDMSB3_2418 putative sugar transport protein (ABC superfamily atp_bind) K23537 nupA; general nucleoside transport system ATP-binding protein D PDMSB3_1971 conserved membrane protein of unknown function K02069 STAR2; UDP-glucose/iron transport system permease protein D PDMSB3_1972 ABC-type uncharacterized transport system, ATPase component K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D PDMSB3_0317 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D PDMSB3_4005 yrbD; toluene transporter subunit: membrane component of ABC superfamily K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D PDMSB3_0315 conserved membrane protein of unknown function K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PDMSB3_3445 conserved protein of unknown function K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PDMSB3_4006 yrbE; toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D PDMSB3_0316 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D PDMSB3_4007 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D PDMSB3_0318 ABC-type uncharacterized transport system, auxiliary component K18480 linN; cholesterol transport system auxiliary component D PDMSB3_3361.1 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein D PDMSB3_4003 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein D PDMSB3_4002 conserved protein of unknown function K07122 mlaB; phospholipid transport system transporter-binding protein D PDMSB3_3004.1 Putative binding protein BAB2_0491 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D PDMSB3_3341.1 ABC-type sugar transport system, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D PDMSB3_3005.1 Permease component of ABC-type sugar transporter K02025 ABC.MS.P; multiple sugar transport system permease protein D PDMSB3_3340.1 Permease component of ABC-type sugar transporter K02025 ABC.MS.P; multiple sugar transport system permease protein D PDMSB3_3006.1 ABC-type sugar transport system, permease component K02026 ABC.MS.P1; multiple sugar transport system permease protein D PDMSB3_3339.1 ABC-type sugar transport system, permease component K02026 ABC.MS.P1; multiple sugar transport system permease protein D PDMSB3_1701.1 ABC-type sugar transport system, periplasmic component K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D PDMSB3_3102 ABC-type sugar transport system, periplasmic component K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D PDMSB3_0087.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K02057 ABC.SS.P; simple sugar transport system permease protein D PDMSB3_1699.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K02057 ABC.SS.P; simple sugar transport system permease protein D PDMSB3_1702.1 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K02057 ABC.SS.P; simple sugar transport system permease protein D PDMSB3_3103 Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter K02057 ABC.SS.P; simple sugar transport system permease protein D PDMSB3_0086.1 ABC-type sugar transport system, ATPase component K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_1700.1 Predicted L-rhamnose ABC transporter, ATP-binding component K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_3104 ABC-type sugar transport system, ATPase component K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D PDMSB3_0030.2 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_0286.1 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_0291.1 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_3159 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein D PDMSB3_0029.2 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein D PDMSB3_3158 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein D PDMSB3_0028.2 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein D PDMSB3_3157 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein D PDMSB3_0027.2 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D PDMSB3_3156 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D PDMSB3_2552.1 phnD; phosphonate/organophosphate ester transporter subunit; periplasmic binding component of ABC superfamily K02044 phnD; phosphonate transport system substrate-binding protein D PDMSB3_2553.1 phnE; Phosphonate transport system permease protein PhnE K02042 phnE; phosphonate transport system permease protein D PDMSB3_2551.1 phnC; phosphonate/organophosphate ester transporter subunit; ATP-binding component of ABC superfamily K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D PDMSB3_0059 hisJ; histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_0417.1 argT; lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_0918.1 argT; lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_1575 hisJ; histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_3253.1 argT; lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein D PDMSB3_1140 hisM; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10015 hisM; histidine transport system permease protein D PDMSB3_1565 hisM; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10015 hisM; histidine transport system permease protein D PDMSB3_1141 hisQ; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10016 hisQ; histidine transport system permease protein D PDMSB3_1564 hisQ; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10016 hisQ; histidine transport system permease protein D PDMSB3_1139 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_1566 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_3773 gltI; glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein D PDMSB3_3771 gltK; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein D PDMSB3_3772 gltJ; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein D PDMSB3_3770 gltL; glutamate/aspartate transport protein (ABC superfamily, atp_bind) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_1228.1 nocT; Nopaline-binding periplasmic protein K10018 occT; octopine/nopaline transport system substrate-binding protein D PDMSB3_1230.1 nocM; Nopaline transport system permease protein NocM K10019 occM; octopine/nopaline transport system permease protein D PDMSB3_1229.1 occQ; Octopine transport system permease protein OccQ K10020 occQ; octopine/nopaline transport system permease protein D PDMSB3_1231.1 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10021 occP; octopine/nopaline transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_1826 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein D PDMSB3_3002 tcyA; L-cystine-binding protein TcyA K02424 tcyA; L-cystine transport system substrate-binding protein D PDMSB3_1825 yecS; putative transporter subunit: permease component of ABC superfamily transporter K10009 tcyB; L-cystine transport system permease protein D PDMSB3_3001 yecS; putative transporter subunit: permease component of ABC superfamily transporter K10009 tcyB; L-cystine transport system permease protein D PDMSB3_3000 yecC; putative transporter subunit: ATP-binding component of ABC superfamily transporter K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_3324.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K23061 lhpP; hydroxyproline transporter system substrate-binding protein D PDMSB3_0196 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0304 ABC-type branched-chain amino acid transport system, periplasmic component (fragment) K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0519.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0547.1 amiC; Aliphatic amidase expression-regulating protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0605 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0806 Amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0847 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1312 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1549 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_1764 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_2090.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_2710.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3031.1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3433 conserved exported protein of unknown function K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_3542 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4285 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4311 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4312 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_4315 ABC-type branched-chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein D PDMSB3_0520.1 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_0805 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_1761 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_2716.1 putative permease component of branched-chain amino acid transport system K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3033.1 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3113 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3432 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_3541 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_4310 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_4314 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein D PDMSB3_0521.1 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_0804 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1760 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3032.1 branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3112 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3431 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_3540 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_4309 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4313 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D PDMSB3_0522.1 braF; High-affinity branched-chain amino acid transport ATP-binding protein BraF K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1759 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_2715.1 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3034.1 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3111 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3429 ABC-type branched-chain amino acid transport system, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3539 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4317 braF; High-affinity branched-chain amino acid transport ATP-binding protein BraF K01995 livG; branched-chain amino acid transport system ATP-binding protein D PDMSB3_0523.1 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_0803 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_1758 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_2714.1 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3030.1 braG; High-affinity branched-chain amino acid transport ATP-binding protein BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3110 ABC-type branched-chain amino acid transport system, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3430 ABC-type branched-chain amino acid transport system, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_3538 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4308 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_4316 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein D PDMSB3_0385 metQ; DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_0916.1 metQ; DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_1443 metQ; putative D-methionine-binding lipoprotein MetQ K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_1522.1 Methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_1532.1 Lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_2535.1 Lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_3289 metQ; DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily K02073 metQ; D-methionine transport system substrate-binding protein D PDMSB3_2533.1 metI; DL-methionine transporter subunit; membrane component protein of ABC superfamily K02072 metI; D-methionine transport system permease protein D PDMSB3_3290 metI; DL-methionine transporter subunit; membrane component protein of ABC superfamily K02072 metI; D-methionine transport system permease protein D PDMSB3_2534.1 metN; DL-methionine transporter subunit; ATP-binding component of ABC superfamily K02071 metN; D-methionine transport system ATP-binding protein D PDMSB3_3291 metN; DL-methionine transporter subunit; ATP-binding component of ABC superfamily K02071 metN; D-methionine transport system ATP-binding protein D PDMSB3_0541.1 Urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein D PDMSB3_0831 putative branched-chain amino acid transport protein (ABC superfamily, peri_bind) K11959 urtA; urea transport system substrate-binding protein D PDMSB3_1377.1 Urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein D PDMSB3_0542.1 Urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D PDMSB3_0830 Amino acid/amide ABC transporter membrane protein 1, HAAT family K11960 urtB; urea transport system permease protein D PDMSB3_1378.1 Urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D PDMSB3_0543.1 Urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D PDMSB3_0829 Urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D PDMSB3_1379.1 Urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D PDMSB3_0544.1 Urea ABC transporter, ATPase protein UrtD K11962 urtD; urea transport system ATP-binding protein D PDMSB3_0828 ABC branched chain amino acid family transporter, ATPase subunit K11962 urtD; urea transport system ATP-binding protein D PDMSB3_1380.1 Urea ABC transporter, ATPase protein UrtD K11962 urtD; urea transport system ATP-binding protein D PDMSB3_0545.1 braG; High-affinity branched-chain amino acid transport ATP-binding protein BraG K11963 urtE; urea transport system ATP-binding protein D PDMSB3_0827 putative branched-chain amino acid transport protein (ABC superfamily, ATP_bind) K11963 urtE; urea transport system ATP-binding protein D PDMSB3_1381.1 Urea ABC transporter, ATPase protein UrtE K11963 urtE; urea transport system ATP-binding protein D PDMSB3_0822 Amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_1078.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_1238.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_1403.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_1454 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_1536.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_1768 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_2008.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_2046.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_2135.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_2792.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_2926 Amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_2948 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_3146.1 Periplasmic component of amino acid ABC-type transporter/signal transduction system K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D PDMSB3_1079.1 glnM; putative glutamine ABC transporter permease protein GlnM K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_1236.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_1237.1 ABC-type amino acid transport system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_1401.1 ABC-type amino acid transport system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_1402.1 amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_1537.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_1538.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_1772 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_2009.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_2010.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_2048.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_2137.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_2793.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_2925 yecS; putative transporter subunit: permease component of ABC superfamily transporter K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_3325.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_3326.1 Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D PDMSB3_1080.1 yecC; putative transporter subunit: ATP-binding component of ABC superfamily transporter K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_1235.1 glnQ; glutamine transporter subunit; ATP-binding component of ABC superfamily K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_1771 yecC; putative transporter subunit: ATP-binding component of ABC superfamily transporter K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_2049.1 yecC; putative transporter subunit: ATP-binding component of ABC superfamily transporter K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_2138.1 glnQ; glutamine transporter subunit; ATP-binding component of ABC superfamily K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_2924 yecC; putative transporter subunit: ATP-binding component of ABC superfamily transporter K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_3327.1 putative enzyme K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D PDMSB3_2630.1 oppA; oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein D PDMSB3_2631.1 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein D PDMSB3_2632.1 oppC; oligopeptide transporter subunit; membrane component of ABC superfamily K15582 oppC; oligopeptide transport system permease protein D PDMSB3_2633.1 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein D PDMSB3_2634.1 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K10823 oppF; oligopeptide transport system ATP-binding protein D PDMSB3_0288 dppA; Periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_4169 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_4170 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein D PDMSB3_4168 dppB; dipeptide transporter; membrane component of ABC superfamily K12369 dppB; dipeptide transport system permease protein D PDMSB3_4167 dppC; dipeptide transporter; membrane component of ABC superfamily K12370 dppC; dipeptide transport system permease protein D PDMSB3_4166 dppD; dipeptide transporter; ATP-binding component of ABC superfamily K12371 dppD; dipeptide transport system ATP-binding protein D PDMSB3_4165 dppF; dipeptide transporter; ATP-binding component of ABC superfamily K12372 dppF; dipeptide transport system ATP-binding protein D PDMSB3_3527 yliB; putative peptide transporter subunit: periplasmic-binding component of ABC superfamily K13889 gsiB; glutathione transport system substrate-binding protein D PDMSB3_3526 yliC; putative peptide transporter permease subunit: membrane component of ABC superfamily K13890 gsiC; glutathione transport system permease protein D PDMSB3_3525 yliD; putative peptide transporter permease subunit: membrane component of ABC superfamily K13891 gsiD; glutathione transport system permease protein D PDMSB3_3528 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K13892 gsiA; glutathione transport system ATP-binding protein D PDMSB3_0650.1 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_1446 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_1518.1 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_2119.1 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_3078.1 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_3573 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PDMSB3_0651.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_1447 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_1519.1 Putative peptide transport system permease protein BAB2_1050 K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_2122.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_3077.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_3574 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein D PDMSB3_0652.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_1448 yliD; putative peptide transporter permease subunit: membrane component of ABC superfamily K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_1520.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_2121.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_3076.1 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_3575 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PDMSB3_0653.1 dppD; dipeptide transporter; ATP-binding component of ABC superfamily K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_1449 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_1521.1 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_2120.1 ATPase component of various ABC-type transport systems with duplicated ATPase domain K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_3576 Oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D PDMSB3_0654.1 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K02032 ddpF; peptide/nickel transport system ATP-binding protein D PDMSB3_1487 ABC-type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein D PDMSB3_2646 ABC-type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein D PDMSB3_1488 yejB; putative oligopeptide transporter subunit; permease component of ABC superfamily K13894 yejB; microcin C transport system permease protein D PDMSB3_2645 yejB; putative oligopeptide transporter subunit; permease component of ABC superfamily K13894 yejB; microcin C transport system permease protein D PDMSB3_1489 yejE; putative oligopeptide transporter subunit; permease component of ABC superfamily transporter K13895 yejE; microcin C transport system permease protein D PDMSB3_2644 yejE; putative oligopeptide transporter subunit; permease component of ABC superfamily transporter K13895 yejE; microcin C transport system permease protein D PDMSB3_1490 yejF; putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components K13896 yejF; microcin C transport system ATP-binding protein D PDMSB3_2643 yejF; putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components K13896 yejF; microcin C transport system ATP-binding protein D PDMSB3_2540 ABC-type Fe3+-hydroxamate transport system, periplasmic component K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D PDMSB3_2884.1 ABC-type Fe3+-hydroxamate transport system, periplasmic component K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D PDMSB3_2541 fhuB; fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components K23228 fhuB; ferric hydroxamate transport system permease protein D PDMSB3_2886.1 Ferrichrome transport system permease protein fhuB (TC 3.A.1.14.3) K23228 fhuB; ferric hydroxamate transport system permease protein D PDMSB3_2539 fhuC; iron-hydroxamate transporter subunit; ATP-binding component of ABC superfamily K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D PDMSB3_2887.1 fepC; iron-enterobactin transporter subunit; ATP-binding component of ABC superfamily K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D PDMSB3_0881 ABC-type Fe3+-hydroxamate transport system, periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D PDMSB3_0876 Iron complex transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D PDMSB3_0877 hmuV; Hemin import ATP-binding protein HmuV K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D PDMSB3_3651 ABC-type metal ion transport system, periplasmic component/surface adhesin K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D PDMSB3_3653 ABC Mn2+/Zn2+ transporter, inner membrane subunit K02075 ABC.ZM.P; zinc/manganese transport system permease protein D PDMSB3_3652 ATPase component of Mn/Zn ABC-type transporter K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D PDMSB3_0025.3 Sugar ABC transporter permease K09688 kpsM; capsular polysaccharide transport system permease protein D PDMSB3_0026.3 bexC; Capsule polysaccharide export inner-membrane protein BexC K10107 kpsE; capsular polysaccharide transport system permease protein D PDMSB3_0024.3 ctrD; Capsule polysaccharide export ATP-binding protein CtrD K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D PDMSB3_0759 Transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein D PDMSB3_2727.1 Transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein D PDMSB3_0762 ABC transporter related K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D PDMSB3_2726.1 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D PDMSB3_0861 putative permease K07091 lptF; lipopolysaccharide export system permease protein D PDMSB3_0860 Membrane protein, YjgP/YjgQ like protein K11720 lptG; lipopolysaccharide export system permease protein D PDMSB3_0423 lptB; putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D PDMSB3_1868 nodJ; Nodulation protein J K09694 nodJ; lipooligosaccharide transport system permease protein D PDMSB3_1869 nodI; Nod factor export ATP-binding protein I K09695 nodI; lipooligosaccharide transport system ATP-binding protein D PDMSB3_2442 Transport permease protein K25180 ybhR; drug efflux transport system permease protein D PDMSB3_2441 ABC-type multidrug transport system, permease component K25181 ybhS; drug efflux transport system permease protein D PDMSB3_2438 Multidrug resistance efflux pump K25183 ybhG; membrane fusion protein YbhG D PDMSB3_2852 lolC; Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E_F; lipoprotein-releasing system permease protein D PDMSB3_2851 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D PDMSB3_0751.1 yhhJ; putative transporter subunit: membrane component of ABC superfamily K01992 ABC-2.P; ABC-2 type transport system permease protein D PDMSB3_0819.1 yadH; putative transporter subunit: membrane component of ABC superfamily K01992 ABC-2.P; ABC-2 type transport system permease protein D PDMSB3_4000 Transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PDMSB3_0804.1 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PDMSB3_0818.1 yadG; putative transporter subunit: ATP-binding component of ABC superfamily K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PDMSB3_4001 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PDMSB3_0727.1 Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D PDMSB3_1287 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D PDMSB3_1450.1 AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system K02004 ABC.CD.P; putative ABC transport system permease protein D PDMSB3_0724.1 lolD; Lipoprotein-releasing system ATP-binding protein LolD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PDMSB3_1451.1 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PDMSB3_2037 ybbA; putative transporter subunit: ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PDMSB3_0254 yfeH; putative sodium/bile acid symporter family (mazG-like) K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D PDMSB3_1925 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump D PDMSB3_3250 norM; putative multidrug resistance protein NorM K26939 norM; MATE family, multidrug efflux pump D PDMSB3_3142 dinF; DNA damage-inducible protein F K26937 dinF; MATE family, multidrug efflux pump D PDMSB3_1770.1 Arabinose efflux permease family protein K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter D PDMSB3_2332 kgtP; alpha-ketoglutarate transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D PDMSB3_2356 kgtP; alpha-ketoglutarate transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D PDMSB3_0242.1 Arabinose efflux permease family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D PDMSB3_1586.1 Arabinose efflux permease family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D PDMSB3_2516.1 Nitrate/nitrite transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D PDMSB3_2914 proP; proline/glycine betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D PDMSB3_0829.1 shiA; shikimate transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein D PDMSB3_2238 shiA; Shikimate transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein D PDMSB3_0041 Nitrate/nitrite transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D PDMSB3_0295.1 Arabinose efflux permease family protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D PDMSB3_0837.1 Nitrate/nitrite transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D PDMSB3_2061.1 Sugar phosphate permease K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D PDMSB3_1742 Arabinose efflux permease family protein K08178 JEN; MFS transporter, SHS family, lactate transporter D PDMSB3_1258.1 gudP; putative D-glucarate transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter D PDMSB3_0064.1 Hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D PDMSB3_1254.1 exuT; hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D PDMSB3_0710.1 ttuB; Putative tartrate transporter K13021 ttuB; MFS transporter, ACS family, tartrate transporter D PDMSB3_0779.1 ttuB; Putative tartrate transporter K13021 ttuB; MFS transporter, ACS family, tartrate transporter D PDMSB3_1469.1 ttuB; Putative tartrate transporter K13021 ttuB; MFS transporter, ACS family, tartrate transporter D PDMSB3_1983.1 pht; Phthalate transporter K18070 pht1; MFS transporter, ACS family, phthalate transporter D PDMSB3_2299.1 gudP; putative glucarate transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D PDMSB3_2083.1 yfaV; putative carboxylate transporter; phthalate permease family K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein D PDMSB3_0309.1 pcaK; 4-hydroxybenzoate transporter PcaK K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D PDMSB3_0640 Arabinose efflux permease family protein K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D PDMSB3_0789.1 pcaK; 4-hydroxybenzoate transporter PcaK K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D PDMSB3_1601 Arabinose efflux permease family protein K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D PDMSB3_0768.1 mhpT; hydroxy-aromatic acid transporter K05819 mhpT; MFS transporter, AAHS family, 3-hydroxyphenylpropionic acid transporter D PDMSB3_2064.1 cynX; Cyanate transport protein CynX K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D PDMSB3_3465 OPA family glycerol-3-phosphate transporter-like MFS transporter/OPA family sugar phosphate sensor protein UhpC-like MFS transporter (fragment) K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D PDMSB3_2115 Nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D PDMSB3_2619 lplT; Lysophospholipid transporter LplT K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D PDMSB3_2669 putative major facilitator superfamily (MFS)transporter K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D PDMSB3_0131 conserved membrane protein of unknown function K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D PDMSB3_3413 Drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D PDMSB3_1760.1 mdtG; Multidrug resistance protein MdtG K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D PDMSB3_0644 ydhP; Inner membrane transport protein YdhP K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D PDMSB3_2847.1 ydhP; putative efflux protein; MFS family K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D PDMSB3_3737 ydhP; Inner membrane transport protein YdhP K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D PDMSB3_1695 emrB; multidrug efflux system protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_1785.1 Drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_1929 Arabinose efflux permease family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_1973.1 emrB; Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_2338.1 Drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_2652.1 Drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_3710 Drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_4355 emrB; multidrug efflux system protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_2517.1 Permeases of the major facilitator superfamily K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein D PDMSB3_0900.1 yebQ; putative transporter; MFS superfamily K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_1160 yebQ; putative transporter; MFS superfamily K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D PDMSB3_3091 fsr; fosmidomycin efflux system, member of the major facilitator superfamily K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D PDMSB3_0155 ynfM; Inner membrane transport protein YnfM K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D PDMSB3_0444 Arabinose efflux permease family protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PDMSB3_0447 Major facilitator superfamily (MFS) metabolite/H+ symporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PDMSB3_1487.1 Niacin transporter NiaP K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PDMSB3_1688.1 Niacin transporter NiaP K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PDMSB3_2167.1 Arabinose efflux permease family protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PDMSB3_2184.1 Major facilitator superfamily (MFS)metabolite/H+ symporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PDMSB3_2236.1 Arabinose efflux permease family protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PDMSB3_3179.1 yyaJ; Putative metabolite transport protein YyaJ K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D PDMSB3_0358 phbI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D PDMSB3_0357 phbH; Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D PDMSB3_3117.1 protein of unknown function K02784 ptsH; phosphocarrier protein HPr D PDMSB3_0390 fruB; Phosphoenolpyruvate-protein phosphotransferase / Phosphocarrier protein HPr / PTS system fructose-specific EIIA component K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D PDMSB3_0391 nagE; N-acetylglucosamine permease IIC component / N-acetylglucosamine-specific phosphotransferase enzyme IIB component / N-acetylglucosamine-specific phosphotransferase enzyme IIA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D PDMSB3_0356 Phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D PDMSB3_0420 ptsN; Phosphotransferase enzyme IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D PDMSB3_0467 aqpZ; Aquaporin Z 2 K06188 aqpZ; aquaporin Z D PDMSB3_4246 aqpZ; aquaporin K06188 aqpZ; aquaporin Z D PDMSB3_3733 glpF; putative glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D PDMSB3_2497 Ion channel K10716 kch; voltage-gated potassium channel D PDMSB3_0247 Inward rectifier potassium channel Kirbac3.1 K08715 IRPC; inward rectifier potassium channel D PDMSB3_0352 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family D PDMSB3_1631 Ammonia permease K03320 amt; ammonium transporter, Amt family D PDMSB3_0111.1 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_0931 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_1051 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_1084 Glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_1289.1 gstB; Glutathione S-transferase GstB K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_1353 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2130 gstB; Glutathione S-transferase GstB K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2231.1 gstA; Protein GstA K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2294 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_2367 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_3191.1 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_4153 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D PDMSB3_3974 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D PDMSB3_2192 Tetratricopeptide repeat protein K07114 yfbK; Ca-activated chloride channel homolog D PDMSB3_2193 Mg-chelatase subunit ChlD K07114 yfbK; Ca-activated chloride channel homolog D PDMSB3_2830 Modulator of FtsH protease K19416 yccA; modulator of FtsH protease D PDMSB3_1979 mscL; Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel D PDMSB3_0596 Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel D PDMSB3_1256 Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel D PDMSB3_1639 Small-conductance mechanosensitive channel K22044 ybiO; moderate conductance mechanosensitive channel D PDMSB3_1924.1 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel K22044 ybiO; moderate conductance mechanosensitive channel D PDMSB3_0882.1 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_2279.1 Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA D PDMSB3_4238 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_0881.1 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB D PDMSB3_2278.1 Flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB D PDMSB3_4237 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB D PDMSB3_0589.1 exbB; Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB D PDMSB3_1400 exbB; Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB D PDMSB3_1480 Biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB D PDMSB3_2285.1 Biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB D PDMSB3_3801 exbB; Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB D PDMSB3_0588.1 exbD; Biopolymer transport protein exbD1 K03559 exbD; biopolymer transport protein ExbD D PDMSB3_1399 exbD; Biopolymer transport protein exbD1 K03559 exbD; biopolymer transport protein ExbD D PDMSB3_1481 Biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD D PDMSB3_1482 exbD; Biopolymer transport protein exbD2 K03559 exbD; biopolymer transport protein ExbD D PDMSB3_2286.1 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D PDMSB3_3800 exbD; Biopolymer transport protein exbD2 K03559 exbD; biopolymer transport protein ExbD D PDMSB3_0622 tolQ; membrane spanning protein in TolA-TolQ-TolR complex K03562 tolQ; biopolymer transport protein TolQ D PDMSB3_0621 tolR; Protein TolR K03560 tolR; biopolymer transport protein TolR D PDMSB3_2346 corA; Magnesium transport protein CorA K03284 corA; magnesium transporter D PDMSB3_0288.1 Mg2+/Co2+ transporter K16074 zntB; zinc transporter D PDMSB3_2446 Mg2+/Co2+ transporter K16074 zntB; zinc transporter D PDMSB3_1630 crcB; putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter D PDMSB3_0717 conserved protein of unknown function K08994 yneE; ion channel-forming bestrophin family protein D PDMSB3_0902 conserved membrane protein of unknown function K08994 yneE; ion channel-forming bestrophin family protein D PDMSB3_2928 Potassium channel HX13_20290 K24915 TMEM175; TMEM175 potassium channel family protein D PDMSB3_0184.1 Magnesium and cobalt efflux protein CorC K03699 tlyC; magnesium and cobalt exporter, CNNM family D PDMSB3_3870 putative Mg2+ and Co2+ transporter CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family D PDMSB3_0232 Outer membrane protein (Porin) K08720 ompU; outer membrane protein OmpU D PDMSB3_1510.1 Outer membrane protein (porin) K08720 ompU; outer membrane protein OmpU D PDMSB3_2957 Outer membrane protein (Porin) K08720 ompU; outer membrane protein OmpU D PDMSB3_3331.1 Outer membrane protein (Porin) K08720 ompU; outer membrane protein OmpU D PDMSB3_1315.1 Outer membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D PDMSB3_3315 ompA; Outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family D PDMSB3_0078.1 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein D PDMSB3_3108.1 Sigma-fimbriae usher protein K07347 fimD; outer membrane usher protein D PDMSB3_3456 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein D PDMSB3_3242.1 Ferrichrome-iron receptor K16090 fiu; catecholate siderophore receptor D PDMSB3_0875 Vitamin B12 transporter K16092 btuB; vitamin B12 transporter D PDMSB3_0433 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PDMSB3_1486 Outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PDMSB3_2063.1 Ferrichrome-iron receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PDMSB3_2249.1 Outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PDMSB3_2538 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PDMSB3_2876.1 Ferrichrome-iron receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D PDMSB3_2686.1 Heavy metal RND efflux outer membrane protein, CzcC family K15725 czcC; outer membrane protein, heavy metal efflux system D PDMSB3_0993.1 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2118 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2656.1 Type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D PDMSB3_1059.1 Outer membrane protein K18903 oprC; outer membrane protein, multidrug efflux system D PDMSB3_1107 RND efflux system, outer membrane lipoprotein, NodT family K18903 oprC; outer membrane protein, multidrug efflux system D PDMSB3_2537.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18903 oprC; outer membrane protein, multidrug efflux system D PDMSB3_0156 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0246.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0698.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0754.1 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1147.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1697 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1714.1 Heavy metal RND efflux outer membrane protein, CzcC family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1874.1 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2839.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2950.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_3084 fusA; Fusaric acid resistance protein FusA K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_3659 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_4351 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1786.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18904 nodT; outer membrane protein, multidrug efflux system D PDMSB3_0030.3 ctrA; Capsule polysaccharide export outer membrane protein CtrA K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_0693 epsA; EPS I polysaccharide export outer membrane protein EpsA K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_0842.1 Periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_1355.1 epsA; EPS I polysaccharide export outer membrane protein EpsA K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_2086 Periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_2910.1 epsA; EPS I polysaccharide export outer membrane protein EpsA K01991 wza; polysaccharide biosynthesis/export protein D PDMSB3_1223.1 Carbohydrate-selective porin K07267 oprB; porin D PDMSB3_2585 bamA; Outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D PDMSB3_2822 bamB; Outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB D PDMSB3_2832 bamC; Outer membrane protein assembly factor BamC K07287 bamC; outer membrane protein assembly factor BamC D PDMSB3_2987 putative lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D PDMSB3_1950 bamD; Outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D PDMSB3_3803 bamE; Outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE D PDMSB3_0893 Outer membrane protein K07278 tamA; translocation and assembly module TamA D PDMSB3_0894 conserved protein of unknown function K09800 tamB; translocation and assembly module TamB D PDMSB3_0140.1 Head domain of trimeric autotransporter adhesin K21449 ata; trimeric autotransporter adhesin D PDMSB3_3786 putative membrane-anchored cell surface protein, haemagluttinin K21449 ata; trimeric autotransporter adhesin D PDMSB3_0424 lptA; Lipopolysaccharide export system protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D PDMSB3_0425 conserved protein of unknown function K11719 lptC; lipopolysaccharide export system protein LptC D PDMSB3_0514 lptD; LPS-assembly protein LptD K04744 lptD; LPS-assembly protein D PDMSB3_3798 lptE; LPS-assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein D PDMSB3_1084.1 Cellulose synthase operon protein C K20543 bcsC; cellulose synthase operon protein C D PDMSB3_3744 ybeX; putative protein involved in divalent ion export K06189 corC; hemolysin (HlyC) family protein D PDMSB3_3520 aroP; aromatic amino acid transporter K11734 aroP; aromatic amino acid transport protein AroP D PDMSB3_2482 arcD; Arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D PDMSB3_0683 Amino acid transporter K28029 UGA4; amino acid or GABA permease D PDMSB3_0047 Ethanolamine permease K16238 eat; ethanolamine permease D PDMSB3_0730 Amino acid transporter K20265 gadC; glutamate:GABA antiporter D PDMSB3_3326 Cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D PDMSB3_2684.1 czcA; Cation efflux system protein CzcA K15726 czcA; heavy metal efflux system protein D PDMSB3_1108 bepE; Efflux pump membrane transporter BepE K18902 bpeF; multidrug efflux pump D PDMSB3_2538.1 bepE; Efflux pump membrane transporter BepE K18902 bpeF; multidrug efflux pump D PDMSB3_2377 Cation/multidrug efflux pump K18303 mexK; multidrug efflux pump D PDMSB3_0158 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_0248.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1057.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1712.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1875.1 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump D PDMSB3_2840.1 bepE; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump D PDMSB3_3660 acrB; multidrug efflux system protein K18138 acrB; multidrug efflux pump D PDMSB3_1149.1 mdtB; multidrug efflux system, subunit B K07788 mdtB; multidrug efflux pump D PDMSB3_1593 mdtB; multidrug transport protein (RND family) K07788 mdtB; multidrug efflux pump D PDMSB3_1148.1 mdtC; multidrug efflux system, subunit C K07789 mdtC; multidrug efflux pump D PDMSB3_1592 mdtC; multidrug efflux system, subunit C K07789 mdtC; multidrug efflux pump D PDMSB3_1834 qacE; Quaternary ammonium compound-resistance protein QacE K03297 emrE; small multidrug resistance pump D PDMSB3_0943 protein of unknown function K11741 sugE; quaternary ammonium compound-resistance protein SugE D PDMSB3_1284 sugE; multidrug efflux system protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D PDMSB3_3622 eamA; cysteine and O-acetyl-L-serine efflux system K15268 eamA; O-acetylserine/cysteine efflux transporter D PDMSB3_1499 putative permease, DMT superfamily K11939 rhtA; inner membrane transporter RhtA D PDMSB3_3351.1 rarD; Chloramphenicol-sensitive protein RarD K05786 rarD; chloramphenicol-sensitive protein RarD D PDMSB3_1162.1 conserved membrane protein of unknown function K09771 TC.SMR3; small multidrug resistance family-3 protein D PDMSB3_0002.1 gnuT; Gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D PDMSB3_3780 gntT; high-affinity gluconate permease (GntP family) K03299 TC.GNTP; gluconate:H+ symporter, GntP family D PDMSB3_2282 kdgT; 2-keto-3-deoxy-D-gluconate transporter K02526 kdgT; 2-keto-3-deoxygluconate permease D PDMSB3_2984 L-lactate transport K03303 lutP; lactate permease D PDMSB3_2938.1 Tellurite resistance protein TehA K03304 tehA; tellurite resistance protein D PDMSB3_1409.1 Putative ionic transporter y4hA K07300 chaA; Ca2+:H+ antiporter D PDMSB3_4270 Ca2+/Na+ antiporter K07301 yrbG; cation:H+ antiporter D PDMSB3_1436 Uncharacterized symporter H16_A2524 K14393 actP; cation/acetate symporter D PDMSB3_0342 dctA; C4-dicarboxylic acid, orotate and citrate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D PDMSB3_3807 dctA; C4-dicarboxylic acid, orotate and citrate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D PDMSB3_0243 yjcE; Uncharacterized Na(+)/H(+) exchanger YjcE K24163 nhaK; monovalent cation/hydrogen antiporter D PDMSB3_1593.1 yjcE; Uncharacterized Na(+)/H(+) exchanger YjcE K24163 nhaK; monovalent cation/hydrogen antiporter D PDMSB3_1946.1 NhaP-type Na+(K+)/H+ antiporter K24160 NHA1; sodium/hydrogen antiporter D PDMSB3_0428 Kef-type K+ transport system, membrane component K03455 KEA1_2_3; K+:H+ antiporter D PDMSB3_3335 Kef-type K+ transport system, predicted NAD-binding component K26735 KEA4_5_6; K+:H+ antiporter D PDMSB3_0242 rutG; pyrimidine transporter K09016 rutG; putative pyrimidine permease RutG D PDMSB3_3658 ygfU; transporter K24206 uacT; uric acid transporter D PDMSB3_1535 ygfQ; putative transporter K06901 pbuG; adenine/guanine/hypoxanthine permease D PDMSB3_2031.1 Permease K06901 pbuG; adenine/guanine/hypoxanthine permease D PDMSB3_1205 benE; Benzoate membrane transport protein K05782 benE; benzoate membrane transport protein D PDMSB3_1473.1 Benzoate transport protein K05782 benE; benzoate membrane transport protein D PDMSB3_0386.1 Chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family D PDMSB3_0598 Chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family D PDMSB3_0959 Chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family D PDMSB3_1744 Chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family D PDMSB3_2368 Chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family D PDMSB3_0217.1 Chromate transport protein K07240 chrA; chromate transporter D PDMSB3_0218.1 Chromate transport protein ChrA K07240 chrA; chromate transporter D PDMSB3_1183 Chromate transport protein ChrA K07240 chrA; chromate transporter D PDMSB3_2508 Chromate transporter, chromate ion transporter family K07240 chrA; chromate transporter D PDMSB3_1564.1 nixA; Nickel transporter NixA K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D PDMSB3_3572 hoxN; High-affinity nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D PDMSB3_2616.1 ybaR; Putative sulfate transporter YbaR K03321 TC.SULP; sulfate permease, SulP family D PDMSB3_2406 mntH; Divalent metal cation transporter MntH K03322 mntH; manganese transport protein D PDMSB3_2531.1 mntH; Divalent metal cation transporter MntH K03322 mntH; manganese transport protein D PDMSB3_1263.1 Solute-binding protein Bamb_6123 K11688 dctP; TRAP-type transport system periplasmic protein D PDMSB3_2148.1 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 dctP; TRAP-type transport system periplasmic protein D PDMSB3_2952 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 dctP; TRAP-type transport system periplasmic protein D PDMSB3_2985.1 TRAP dicarboxylate transporter, periplasmic ligand binding subunit DctP K11688 dctP; TRAP-type transport system periplasmic protein D PDMSB3_1264.1 TRAP-type C4-dicarboxylate transport system, small permease component K11689 dctQ; TRAP-type transport system small permease protein D PDMSB3_2147.1 TRAP-type C4-dicarboxylate transport system, small permease component K11689 dctQ; TRAP-type transport system small permease protein D PDMSB3_2951 TRAP-type C4-dicarboxylate transport system, small permease component K11689 dctQ; TRAP-type transport system small permease protein D PDMSB3_1265.1 TRAP C4-dicarboxylate transporter, DctM subunit K11690 dctM; TRAP-type transport system large permease protein D PDMSB3_2146.1 TRAP transporter, DctM subunit K11690 dctM; TRAP-type transport system large permease protein D PDMSB3_2950 TRAP transporter, DctM subunit K11690 dctM; TRAP-type transport system large permease protein D PDMSB3_2984.1 TRAP transporter, DctM subunit K21393 dctQM; TRAP-type transport system permease protein D PDMSB3_0335 yjbB; putative transporter K03324 yjbB; phosphate:Na+ symporter D PDMSB3_1067.1 Na+/H+ antiporter NhaD-like permease K03893 arsB; arsenical pump membrane protein D PDMSB3_0033.2 acr; Arsenical-resistance protein Acr3 K03325 ACR3; arsenite transporter D PDMSB3_3152.1 acr; Arsenical-resistance protein Acr3 K03325 ACR3; arsenite transporter D PDMSB3_3606 mviN; conserved hypothetical protein; putative inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase D PDMSB3_2108.1 Putative permease K13936 mdcF; malonate transporter and related proteins D PDMSB3_3219.1 Putative permease K13936 mdcF; malonate transporter and related proteins D PDMSB3_2921 putative permease K24180 mleP; malate permease and related proteins D PDMSB3_2812 trkD; potassium transporter K03549 kup; KUP system potassium uptake protein D PDMSB3_1523 conserved membrane protein of unknown function K06895 lysE; L-lysine exporter family protein LysE/ArgO D PDMSB3_3474 putative threonine efflux protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D PDMSB3_0853.1 Putative threonine efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D PDMSB3_4133 putative threonine efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D PDMSB3_0273.1 L-lysine permease K05835 rhtC; threonine efflux protein D PDMSB3_3243 putative branched-chain amino acid permease (Azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump D PDMSB3_3684 putative branched-chain amino acid permease (Azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump D PDMSB3_3244 putative membrane protein K26606 azlD; branched chain amino acid efflux pump D PDMSB3_3683 putative membrane protein K26606 azlD; branched chain amino acid efflux pump D PDMSB3_0967.1 Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region K07793 tctA; putative tricarboxylic transport membrane protein D PDMSB3_0966.1 Tripartite tricarboxylate transporter TctB family K07794 tctB; putative tricarboxylic transport membrane protein D PDMSB3_0994.1 Putative transmembrane protein K15547 mdtO; multidrug resistance protein MdtO D PDMSB3_1470.1 Putative membrane protein K22736 VIT; vacuolar iron transporter family protein D PDMSB3_1815.1 conserved membrane protein of unknown function K05595 marC; multiple antibiotic resistance protein D PDMSB3_2504 conserved membrane protein of unknown function K07034 GPR1; acetate uptake transporter family protein D PDMSB3_3891 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28] D PDMSB3_3367 mneA; putative manganese exporter K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D PDMSB3_1392 High-affinity Fe2+/Pb2+ permease K07243 FTR; high-affinity iron transporter D PDMSB3_1221.1 efeN; putative deferrochelatase/peroxidase EfeN K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D PDMSB3_1390 conserved exported protein of unknown function K07230 p19; periplasmic iron binding protein D PDMSB3_0590.1 TonB family protein K03832 tonB; periplasmic protein TonB D PDMSB3_0965 TonB family protein K03832 tonB; periplasmic protein TonB D PDMSB3_1401 TonB family protein K03832 tonB; periplasmic protein TonB D PDMSB3_1479 Protein TonB K03832 tonB; periplasmic protein TonB D PDMSB3_2287.1 Ferric siderophore transport system, periplasmic binding protein TonB K03832 tonB; periplasmic protein TonB D PDMSB3_0618 pal; Peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D PDMSB3_0620 TolA protein K03646 tolA; colicin import membrane protein D PDMSB3_0619 tolB; Tol-Pal system protein TolB K03641 tolB; TolB protein D PDMSB3_1211.1 madA; Acetyl-S-ACP:malonate ACP transferase K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187] D PDMSB3_2113.1 madA; Acetyl-S-ACP:malonate ACP transferase K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187] D PDMSB3_1209.1 mdcC; Malonate decarboxylase acyl carrier protein K13931 mdcC; malonate decarboxylase delta subunit D PDMSB3_2111.1 mdcC; Malonate decarboxylase acyl carrier protein K13931 mdcC; malonate decarboxylase delta subunit D PDMSB3_0039.2 aioB; Arsenite oxidase subunit AioB K08355 aoxA; arsenite oxidase small subunit [EC:1.20.2.1 1.20.9.1] D PDMSB3_0040.2 aioA; Arsenite oxidase subunit AioA K08356 aoxB; arsenite oxidase large subunit [EC:1.20.2.1 1.20.9.1] D PDMSB3_1696 emrA; multidrug efflux system K03543 emrA; membrane fusion protein, multidrug efflux system D PDMSB3_1784.1 Multidrug resistance efflux pump K03543 emrA; membrane fusion protein, multidrug efflux system D PDMSB3_2653.1 Multidrug resistance efflux pump K03543 emrA; membrane fusion protein, multidrug efflux system D PDMSB3_0995.1 Multidrug resistance efflux pump K15549 mdtN; membrane fusion protein, multidrug efflux system D PDMSB3_2685.1 czcB; Cobalt-zinc-cadmium resistance protein CzcB K15727 czcB; membrane fusion protein, heavy metal efflux system D PDMSB3_2119 Type I secretion membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D D PDMSB3_2948.1 Multidrug resistance efflux pump K11003 hlyD; membrane fusion protein, hemolysin D D PDMSB3_2658.1 Multidrug resistance efflux pump K13408 cvaA; membrane fusion protein D PDMSB3_1109 RND efflux pump, membrane fusion protein, CzcB subfamily K18901 bpeE; membrane fusion protein, multidrug efflux system D PDMSB3_2539.1 putative Co/Zn/Cd efflux system membrane fusion protein K18901 bpeE; membrane fusion protein, multidrug efflux system D PDMSB3_2376 RND family efflux transporter, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D PDMSB3_0157 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0247.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1058.1 putative Co/Zn/Cd efflux system membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1713.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1876.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_2841.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_3661 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1150.1 mdtA; multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system D PDMSB3_1594 mdtA; multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system D PDMSB3_0694 epsB; putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_0795 Capsular biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_0844.1 epsB; Putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_1357.1 epsB; Putative tyrosine-protein kinase EpsB K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_1798 Capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_2087 Capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_2909.1 Tyrosine-protein kinase Wzc K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D PDMSB3_0211 putative periplasmic or secreted lipoprotein K28369 dolP; outer membrane lipoprotein DolP D PDMSB3_0541 putative paraquat-inducible protein A K03808 pqiA; intermembrane transport protein PqiA/LetA D PDMSB3_0542 putative paraquat-inducible protein A K03808 pqiA; intermembrane transport protein PqiA/LetA D PDMSB3_0540 Qaraquat-inducible protein B K06192 pqiB; intermembrane transport protein PqiB/LetB D PDMSB3_2206 Qaraquat-inducible protein B K06192 pqiB; intermembrane transport protein PqiB/LetB D PDMSB3_0539 conserved protein of unknown function K09857 pqiC; intermembrane transport lipoprotein PqiC D PDMSB3_2207 conserved protein of unknown function K09857 pqiC; intermembrane transport lipoprotein PqiC D PDMSB3_0164.1 Entericidin EcnA/B family K16347 ecnA; entericidin A D PDMSB3_0101.1 yhiD; Putative magnesium transporter YhiD K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D PDMSB3_0255.2 srpB; Protein SrpB K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D PDMSB3_1198.1 Protein MgtC K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D PDMSB3_2117 putative Mg++ transporter, MgtC/SapB family K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D PDMSB3_2421 5-hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D PDMSB3_3715 putative copper export protein K07245 pcoD; copper resistance protein D D PDMSB3_2257 conserved exported protein of unknown function K07156 copC; copper resistance protein C D PDMSB3_3716 conserved exported protein of unknown function K07156 copC; copper resistance protein C C 02044 Secretion system [BR:pdio02044] D PDMSB3_2120 apxIB; Toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB D PDMSB3_2945.1 ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB D PDMSB3_2119 Type I secretion membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D D PDMSB3_2948.1 Multidrug resistance efflux pump K11003 hlyD; membrane fusion protein, hemolysin D D PDMSB3_0993.1 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2118 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2656.1 Type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D PDMSB3_2658.1 Multidrug resistance efflux pump K13408 cvaA; membrane fusion protein D PDMSB3_2657.1 ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D PDMSB3_4342 putative general secretory pathway protein C K02452 gspC; general secretion pathway protein C D PDMSB3_4339 General secretion pathway protein D K02453 gspD; general secretion pathway protein D D PDMSB3_4340 gspE; general secretory pathway component, cryptic K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D PDMSB3_4341 xcpS; Type II secretion system protein F K02455 gspF; general secretion pathway protein F D PDMSB3_4343 gspG; pseudopilin, cryptic, general secretion pathway K02456 gspG; general secretion pathway protein G D PDMSB3_4344 General secretion pathway protein H K02457 gspH; general secretion pathway protein H D PDMSB3_4345 General secretion pathway protein I K02458 gspI; general secretion pathway protein I D PDMSB3_4346 Prepilin-type N-terminal cleavage/methylation domain-containing protein K02459 gspJ; general secretion pathway protein J D PDMSB3_4347 Type II secretory pathway, component PulK K02460 gspK; general secretion pathway protein K D PDMSB3_4348 General secretion pathway protein L K02461 gspL; general secretion pathway protein L D PDMSB3_4349 Type II secretory pathway, component PulM K02462 gspM; general secretion pathway protein M D PDMSB3_4350 Type II secretion system protein N (GspN) K02463 gspN; general secretion pathway protein N D PDMSB3_3873 gspO; Leader peptidase / N-methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D PDMSB3_3695 putative type IV fimbrial pilin protein K02650 pilA; type IV pilus assembly protein PilA D PDMSB3_3871 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D PDMSB3_3872 Type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC D PDMSB3_0632 Prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE D PDMSB3_4036 conserved protein of unknown function K02664 pilO; type IV pilus assembly protein PilO D PDMSB3_4035 Type IV pilus secretin PilQ/competence protein K02666 pilQ; type IV pilus assembly protein PilQ D PDMSB3_0630 Tfp pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW D PDMSB3_0627 Type II secretion system protein GspH K08084 fimT; type IV fimbrial biogenesis protein FimT D PDMSB3_0168.1 FimV C-terminal domain protein K08086 fimV; pilus assembly protein FimV D PDMSB3_1713 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PDMSB3_2264.1 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PDMSB3_0134.1 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_1715 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_2262.1 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_0133.1 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_1716 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_2261.1 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_1718 putative pilus assembly protein, CpaE-like protein K02282 cpaE; pilus assembly protein CpaE D PDMSB3_1919.1 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE D PDMSB3_2259.1 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE D PDMSB3_0132.1 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_1719 putative type II/IV secretion ATPase protein, TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_2258.1 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_0131.1 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B D PDMSB3_1720 putative tight adherence TadB related transmembrane protein K12510 tadB; tight adherence protein B D PDMSB3_2257.1 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B D PDMSB3_0130.1 Type II/IV secretion system protein TadC, associated with Flp pilus assembly K12511 tadC; tight adherence protein C D PDMSB3_1721 putative tight adherence TadC related transmembrane protein K12511 tadC; tight adherence protein C D PDMSB3_2256.1 Type II/IV secretion system protein TadC, associated with Flp pilus assembly K12511 tadC; tight adherence protein C D PDMSB3_1722 putative lipoprotein transmembrane K27079 tadD; tight adherence protein D D PDMSB3_1714 TadE-like protein K12513 tadE; tight adherence protein E D PDMSB3_2254.1 TadE-like protein K12513 tadE; tight adherence protein E D PDMSB3_1724 Predicted membrane protein K27080 tadG; tight adherence protein G D PDMSB3_0135.1 conserved protein of unknown function K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_0139.1 conserved protein of unknown function K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_1712 Flp pilus assembly protein, pilin Flp K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_2265.1 Flp pilus assembly protein, pilin Flp K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_3480 putative integral membrane protein K02221 yggT; YggT family protein D PDMSB3_1921 conserved exported protein of unknown function K02237 comEA; competence protein ComEA D PDMSB3_3299 Helix-hairpin-helix protein K02237 comEA; competence protein ComEA D PDMSB3_2849 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D PDMSB3_1410 hrpA; Type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C D PDMSB3_1411 conserved protein of unknown function K03220 yscD; type III secretion protein D D PDMSB3_1416 hrcJ; type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J D PDMSB3_1418 Flagellar biosynthesis/type III secretory pathway protein K03223 yscL; type III secretion protein L D PDMSB3_1425 hrcN; Putative type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D PDMSB3_1419 hrcQb; Putative type III secretory pathway protein HrcQb, FliN like K03225 yscQ; type III secretion protein Q D PDMSB3_1420 hrcR; Putative hypersensitivity response secretion protein HrcR, type III secretion system K03226 yscR; type III secretion protein R D PDMSB3_1421 hrcS; Type III secretion protein HrcS K03227 yscS; type III secretion protein S D PDMSB3_1422 hrcT; putative type III secretion system innermembrane protein, HcrT/YscT-like K03228 yscT; type III secretion protein T D PDMSB3_1423 hrcU; Putative type III secretion system protein HrcU K03229 yscU; type III secretion protein U D PDMSB3_1424 hrcV; Hypersensitivity response secretion protein hrcV, Type III secretory pathway component K03230 yscV; type III secretion protein V D PDMSB3_1415 conserved protein of unknown function K22487 prgJ; type III secretion system protein D PDMSB3_4223 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA D PDMSB3_4224 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB D PDMSB3_4180 conserved protein of unknown function K04061 flhB2; flagellar biosynthesis protein D PDMSB3_4185 flagellar basal-body MS-ring and collar protein (fragment) K02409 fliF; flagellar M-ring protein FliF D PDMSB3_4188 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH D PDMSB3_4189 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D PDMSB3_4195 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN D PDMSB3_4196 Flagellar protein K02418 fliO; flagellar protein FliO/FliZ D PDMSB3_4197 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D PDMSB3_4198 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ D PDMSB3_4199 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR D PDMSB3_0113.2 Flagellar hook-length control protein FliK K12056 traG; conjugal transfer mating pair stabilization protein TraG D PDMSB3_0111.2 Sex pilus assembly protein K12057 traF; conjugal transfer pilus assembly protein TraF D PDMSB3_0123.2 Conjugal transfer mating pair stabilization protein TraN K12058 traN; conjugal transfer mating pair stabilization protein TraN D PDMSB3_0095.2 Conjugative transfer protein K12059 trbC; conjugal transfer pilus assembly protein TrbC D PDMSB3_0094.2 IncF plasmid conjugative transfer pilus assembly protein TraU K12060 traU; conjugal transfer pilus assembly protein TraU D PDMSB3_0093.2 Sex pilus assembly and synthesis protein K12061 traW; conjugal transfer pilus assembly protein TraW D PDMSB3_0110.2 Signal peptidase I (fragment) K12062 trbI; conjugal transfer pilin signal peptidase TrbI D PDMSB3_0103.2 IncF plasmid conjugative transfer pilus assembly protein TraC K12063 traC; conjugal transfer ATP-binding protein TraC D PDMSB3_0101.2 conserved exported protein of unknown function K12064 traV; conjugal transfer pilus assembly protein TraV D PDMSB3_0100.2 TraB pilus assembly family protein K12065 traB; conjugal transfer pilus assembly protein TraB D PDMSB3_0099.2 Type VI secretion protein K12066 traK; conjugal transfer pilus assembly protein TraK D PDMSB3_0098.2 Type VI secretion protein K12067 traE; conjugal transfer pilus assembly protein TraE D PDMSB3_0026.4 Conjugal transfer pilus assembly protein TraI K12070 traI; conjugal transfer pilus assembly protein TraI D PDMSB3_0025.4 Conjugal transfer protein TraG K12071 traD; conjugal transfer pilus assembly protein TraD D PDMSB3_0090.2 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D PDMSB3_3930 Thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D PDMSB3_0112.2 Conjugal transfer protein TraH K12072 traH; conjugative transfer pilus assembly protein TraH D PDMSB3_0030.4 Type IV secretion system protein VirB3 K20529 trbD; type IV secretion system protein TrbD D PDMSB3_0029.4 Type IV secretion system protein VirB4 K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D PDMSB3_0028.4 conserved exported protein of unknown function K20266 trbJ; type IV secretion system protein TrbJ D PDMSB3_1317.1 Type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL D PDMSB3_2256 Type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL D PDMSB3_1302.1 putative transmembrane protein K11892 impK; type VI secretion system protein ImpK D PDMSB3_2255 Type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK D PDMSB3_1303.1 Type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ D PDMSB3_2254 Type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ D PDMSB3_0484.1 Type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH D PDMSB3_1312.1 Type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH D PDMSB3_1777.1 Type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH D PDMSB3_0478.1 Protein ImpG/VasA K11896 impG; type VI secretion system protein ImpG D PDMSB3_1311.1 Protein ImpG/VasA K11896 impG; type VI secretion system protein ImpG D PDMSB3_1778.1 Protein ImpG/VasA K11896 impG; type VI secretion system protein ImpG D PDMSB3_2890 Type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG D PDMSB3_1310.1 Type VI secretion system lysozyme-related protein K11897 impF; type VI secretion system protein ImpF D PDMSB3_2244 Type VI secretion system lysozyme-related protein K11897 impF; type VI secretion system protein ImpF D PDMSB3_1308.1 Type VI secretion system protein ImpC K11900 impC; type VI secretion system protein ImpC D PDMSB3_2249 Type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC D PDMSB3_1307.1 Type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB D PDMSB3_2248 Type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB D PDMSB3_1314.1 tssA; Type VI secretion-associated protein, ImpA family (impA domain containing TssA-like protein) K11902 impA; type VI secretion system protein ImpA D PDMSB3_2243 conserved protein of unknown function K11902 impA; type VI secretion system protein ImpA D PDMSB3_1309.1 Putative cytoplasmic protein USSDB7A K11903 hcp; type VI secretion system secreted protein Hcp D PDMSB3_1868.1 hcp; Protein hcp1 K11903 hcp; type VI secretion system secreted protein Hcp D PDMSB3_2252 hcp; Protein hcp1 K11903 hcp; type VI secretion system secreted protein Hcp D PDMSB3_0013 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D PDMSB3_0479.1 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D PDMSB3_2892 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D PDMSB3_1304.1 PUTATIVE TRANSMEMBRANE PROTEIN K11906 vasD; type VI secretion system protein VasD D PDMSB3_2253 Type VI secretion lipoprotein, VC_A0113 family K11906 vasD; type VI secretion system protein VasD D PDMSB3_1313.1 clpV; Protein ClpV1 K11907 vasG; type VI secretion system protein VasG D PDMSB3_2247 clpB; Chaperone protein ClpB K11907 vasG; type VI secretion system protein VasG D PDMSB3_1316.1 Type VI secretion-associated protein, BMA_A0400 family K11890 impM; type VI secretion system protein ImpM D PDMSB3_0074.1 smf; Major fimbrial subunit SMF-1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_0076.1 smf; Major fimbrial subunit SMF-1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_0083.1 P pilus assembly protein, pilin FimA K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_3454 smf; Major fimbrial subunit SMF-1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_3457 P pilus assembly protein, pilin FimA K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_3107.1 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein D PDMSB3_0078.1 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein D PDMSB3_3108.1 Sigma-fimbriae usher protein K07347 fimD; outer membrane usher protein D PDMSB3_3456 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein D PDMSB3_3106.1 Sigma-fimbriae tip adhesin K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PDMSB3_3109.1 Putative secreted protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PDMSB3_3880 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D PDMSB3_0364 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB D PDMSB3_0549 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD D PDMSB3_4095 secE; Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D PDMSB3_0548 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF D PDMSB3_1317 Protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D PDMSB3_4059 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY D PDMSB3_3858 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PDMSB3_0404 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein K03110 ftsY; fused signal recognition particle receptor D PDMSB3_0550 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC D PDMSB3_4389 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D PDMSB3_3984 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D PDMSB3_3983 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D PDMSB3_3982 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:pdio02042] D PDMSB3_0184.1 Magnesium and cobalt efflux protein CorC K03699 tlyC; magnesium and cobalt exporter, CNNM family D PDMSB3_3870 putative Mg2+ and Co2+ transporter CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family D PDMSB3_3719 Hemolysin-3 K11068 hlyIII; hemolysin III D PDMSB3_1629 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3020 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3249.1 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D PDMSB3_3706 plcN; Non-hemolytic phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] C 02022 Two-component system [BR:pdio02022] D PDMSB3_3153 Phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D PDMSB3_0024.2 phoB; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D PDMSB3_3154 phoB; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D PDMSB3_1071.1 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_1145 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_1987 putative oxidative stress resistance periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_4023 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D PDMSB3_0032.1 ompR; Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_1070.1 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_1144 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_1988 ompR; two-component response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_4016 ompR; Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_4022 ompR; Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D PDMSB3_1061.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1330.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1525 irlS; Sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1715.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_2682.1 irlS; Sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1060.1 yedW; DNA-binding response regulator in two-component system with YedV K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1329.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1526 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1716.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_2683.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_2276 Signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D PDMSB3_2275 qseB; DNA-binding response regulator in two-component regulatory system with QseC K07666 qseB; two-component system, OmpR family, response regulator QseB D PDMSB3_1282 kdpD; fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein; sensory histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D PDMSB3_1141.1 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PDMSB3_1283 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D PDMSB3_2067.1 Signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PDMSB3_2921.1 Signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D PDMSB3_2068.1 qseB; DNA-binding response regulator in two-component regulatory system with QseC K07774 tctD; two-component system, OmpR family, response regulator TctD D PDMSB3_3671 Signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D PDMSB3_2276.1 ompR; Transcriptional regulatory protein OmpR K02483 K02483; two-component system, OmpR family, response regulator D PDMSB3_3672 qseB; DNA-binding response regulator in two-component regulatory system with QseC K02483 K02483; two-component system, OmpR family, response regulator D PDMSB3_3702 tctD; Transcriptional regulatory protein tctD K02483 K02483; two-component system, OmpR family, response regulator D PDMSB3_4326 tctD; Transcriptional regulatory protein tctD K02483 K02483; two-component system, OmpR family, response regulator D PDMSB3_0059.1 Signal transduction histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D PDMSB3_3449 Signal transduction histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D PDMSB3_0463 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_0465 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_3451 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_3453 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_4124 rcsB; Transcriptional regulatory protein RcsB K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D PDMSB3_0176 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D PDMSB3_0594.1 Methanol utilization control regulatory protein MoxX K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D PDMSB3_0125.1 bvgA; putative Virulence factors positive transcription regulator BvgA K07690 evgA; two-component system, NarL family, response regulator EvgA D PDMSB3_0143.1 Putative transcriptional regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D PDMSB3_2597.1 Sensor histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D PDMSB3_2900 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D PDMSB3_2899 glnG; fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D PDMSB3_0112 ntrY; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation (ntrY/X like system) K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D PDMSB3_0113 ntrX; Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D PDMSB3_0035.2 C4-dicarboxylate transport transcriptional response regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC D PDMSB3_0343 Signal transduction histidine kinase regulating C4-dicarboxylate transport system K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D PDMSB3_0344 dctD; C4-dicarboxylate transport transcriptional regulatory protein DctD K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D PDMSB3_0036.2 Histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D PDMSB3_0026.1 Chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_4235 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_0030.1 cheY; Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4228 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4236 Response regulator receiver domain protein(CheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_1887.1 cheB; Putative protein-glutamate methylesterase/protein-glutamine glutaminase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PDMSB3_4229 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PDMSB3_1588.1 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] D PDMSB3_1461 Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D PDMSB3_4377 Chemotaxis protein histidine kinase-like protein K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE D PDMSB3_4375 Diguanylate cyclase (GGDEF) domain-containing protein K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65] D PDMSB3_4376 cheB; Chemotaxis response regulator protein-glutamate methylesterase 4 K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61] D PDMSB3_0138 Histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D PDMSB3_0139 actR; Acid tolerance regulatory protein ActR K15012 regA; two-component system, response regulator RegA D PDMSB3_2140.1 Histidine kinase K19621 phcS; two-component system, sensor histidine kinase PhcS [EC:2.7.13.3] D PDMSB3_1151.1 Signal transduction histidine kinase K19622 phcR; two-component system, response regulator PhcR D PDMSB3_2143.1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K19623 phcQ; two-component system, probable response regulator PhcQ D PDMSB3_2066.1 Nitrate ABC transporter, nitrate-binding protein K22067 nasS; two-component system, oxyanion-binding sensor D PDMSB3_2065.1 Response regulator NasT K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:pdio02035] D PDMSB3_0026.1 Chemotaxis protein histidine kinase-like protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_4235 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PDMSB3_4234 cheW; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D PDMSB3_3369.1 Chemotaxis protein CheC --inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC D PDMSB3_4230 cheD; putative chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D PDMSB3_1888.1 cheR; Putative methyltransferase Cher3 K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PDMSB3_4231 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PDMSB3_1887.1 cheB; Putative protein-glutamate methylesterase/protein-glutamine glutaminase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PDMSB3_4229 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PDMSB3_1588.1 PAS domain S-box K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] D PDMSB3_0030.1 cheY; Chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4228 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4236 Response regulator receiver domain protein(CheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PDMSB3_4227 cheZ; chemotaxis regulator, protein phosphatase for CheY K03414 cheZ; chemotaxis protein CheZ D PDMSB3_1461 Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D PDMSB3_0112.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0234 tsr; Methyl-accepting chemotaxis protein I K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0268.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0370.1 tar; Methyl-accepting chemotaxis protein II K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0384 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0426.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0863.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2400 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2617.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2811.1 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_2813.1 tse; Methyl-accepting chemotaxis serine transducer K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3030 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3031 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_3090 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D PDMSB3_0097.1 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0454 tar; methyl-accepting chemotaxis protein II K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0780 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_2314 tsr; Methyl-accepting chemotaxis protein I K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_2340 tas; Methyl-accepting chemotaxis aspartate transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_4233 tar; methyl-accepting chemotaxis protein II K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D PDMSB3_0058.1 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor D PDMSB3_4188 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH D PDMSB3_4189 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D PDMSB3_4190 Flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D PDMSB3_4196 Flagellar protein K02418 fliO; flagellar protein FliO/FliZ D PDMSB3_4197 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D PDMSB3_4198 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ D PDMSB3_4199 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR D PDMSB3_4223 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA D PDMSB3_4224 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB D PDMSB3_4187 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG D PDMSB3_4194 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM D PDMSB3_4195 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN D PDMSB3_4185 flagellar basal-body MS-ring and collar protein (fragment) K02409 fliF; flagellar M-ring protein FliF D PDMSB3_4208 flgI; flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI D PDMSB3_4216 Flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D PDMSB3_4017 flgH; Flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D PDMSB3_4209 flgH; flagellar protein of basal-body outer-membrane L ring K02393 flgH; flagellar L-ring protein FlgH D PDMSB3_4193 Flagellar protein FliL K02415 fliL; flagellar protein FliL D PDMSB3_4184 fliE; flagellar basal-body component K02408 fliE; flagellar hook-basal body complex protein FliE D PDMSB3_4191 Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D PDMSB3_4215 flgB; flagellar component of cell-proximal portion of basal-body rod K02387 flgB; flagellar basal-body rod protein FlgB D PDMSB3_4214 flgC; flagellar component of cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC D PDMSB3_4213 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD D PDMSB3_4211 flgF; flagellar component of cell-proximal portion of basal-body rod K02391 flgF; flagellar basal-body rod protein FlgF D PDMSB3_4210 flgG; flagellar component of cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG D PDMSB3_4207 Flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D PDMSB3_4212 Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D PDMSB3_4205 Flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D PDMSB3_4204 Flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D PDMSB3_4218 Flagellar biosynthesis/type III secretory pathway chaperone K02399 flgN; flagellar biosynthesis protein FlgN D PDMSB3_0069.3 Flagellin K02406 fliC; flagellin D PDMSB3_4258 fliC; A-type flagellin K02406 fliC; flagellin D PDMSB3_4259 Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D PDMSB3_4183 fliS; Flagellar secretion chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D PDMSB3_0071.3 Protein FliT K02423 fliT; flagellar protein FliT D PDMSB3_4182 putative flagellar protein FliT K02423 fliT; flagellar protein FliT D PDMSB3_4260 conserved protein of unknown function K02423 fliT; flagellar protein FliT D PDMSB3_2529.1 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD D PDMSB3_4240 flhD; Flagellar transcriptional regulator FlhD K02403 flhD; flagellar transcriptional activator FlhD D PDMSB3_2530.1 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC D PDMSB3_4239 protein of unknown function K02402 flhC; flagellar transcriptional activator FlhC D PDMSB3_4220 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA D PDMSB3_0882.1 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_2279.1 Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA D PDMSB3_4238 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA D PDMSB3_0881.1 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB D PDMSB3_2278.1 Flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB D PDMSB3_4237 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB D PDMSB3_1826 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein D PDMSB3_3002 tcyA; L-cystine-binding protein TcyA K02424 tcyA; L-cystine transport system substrate-binding protein D PDMSB3_4217 Flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D PDMSB3_4222 Flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D PDMSB3_4221 ATPase involved in chromosome partitioning K04562 flhG; flagellar biosynthesis protein FlhG D PDMSB3_3695 putative type IV fimbrial pilin protein K02650 pilA; type IV pilus assembly protein PilA D PDMSB3_3871 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D PDMSB3_3872 Type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC D PDMSB3_3873 gspO; Leader peptidase / N-methyltransferase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D PDMSB3_4035 Type IV pilus secretin PilQ/competence protein K02666 pilQ; type IV pilus assembly protein PilQ D PDMSB3_4036 conserved protein of unknown function K02664 pilO; type IV pilus assembly protein PilO D PDMSB3_0630 Tfp pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW D PDMSB3_0632 Prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE D PDMSB3_0135.1 conserved protein of unknown function K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_0139.1 conserved protein of unknown function K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_1712 Flp pilus assembly protein, pilin Flp K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_2265.1 Flp pilus assembly protein, pilin Flp K02651 flp; pilus assembly protein Flp/PilA D PDMSB3_1713 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PDMSB3_2264.1 Flp pilus assembly protein, protease CpaA K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D PDMSB3_0134.1 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_1715 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_2262.1 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D PDMSB3_0133.1 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_1716 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_2261.1 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC D PDMSB3_1718 putative pilus assembly protein, CpaE-like protein K02282 cpaE; pilus assembly protein CpaE D PDMSB3_1919.1 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE D PDMSB3_2259.1 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE D PDMSB3_0132.1 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_1719 putative type II/IV secretion ATPase protein, TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_2258.1 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D PDMSB3_0074.1 smf; Major fimbrial subunit SMF-1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_0076.1 smf; Major fimbrial subunit SMF-1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_0083.1 P pilus assembly protein, pilin FimA K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_3454 smf; Major fimbrial subunit SMF-1 K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_3457 P pilus assembly protein, pilin FimA K07345 fimA; major type 1 subunit fimbrin (pilin) D PDMSB3_3107.1 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein D PDMSB3_0078.1 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein D PDMSB3_3108.1 Sigma-fimbriae usher protein K07347 fimD; outer membrane usher protein D PDMSB3_3456 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein D PDMSB3_3106.1 Sigma-fimbriae tip adhesin K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D PDMSB3_3109.1 Putative secreted protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:pdio04812] D PDMSB3_0123 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_1729.1 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_1971.1 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_0073.4 Plasmid segregation actin-type ATPase ParM K18640 parM; plasmid segregation protein ParM D PDMSB3_2509.1 conserved protein of unknown function K18640 parM; plasmid segregation protein ParM D PDMSB3_3884 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ D PDMSB3_3885 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA D PDMSB3_0954 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D PDMSB3_0955 minD; cell division inhibitor, a membrane ATPase,activates minC K03609 minD; septum site-determining protein MinD D PDMSB3_0956 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor D PDMSB3_0006.1 Chromosome (plasmid) partitioning protein ParA K03496 parA; chromosome partitioning protein D PDMSB3_0041.3 Chromosome partitioning protein K03496 parA; chromosome partitioning protein D PDMSB3_0211.2 Chromosome partitioning protein K03496 parA; chromosome partitioning protein D PDMSB3_0219.2 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D PDMSB3_0888 putative ParA family ATPase K03496 parA; chromosome partitioning protein D PDMSB3_2295 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein D PDMSB3_4305 conserved protein of unknown function K03496 parA; chromosome partitioning protein D PDMSB3_0007.1 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0027 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0042.3 Chromosome partitioning protein, ParB family K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0159.2 Nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_0218.2 ParB, partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_2794 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D PDMSB3_4304 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:pdio04147] D PDMSB3_1192 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG D PDMSB3_1775.1 putative fructose-bisphosphate aldolase class 1 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PDMSB3_2845 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PDMSB3_3809 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D PDMSB3_3682 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PDMSB3_3681 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40] D PDMSB3_2661 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D PDMSB3_1496.1 Microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D PDMSB3_3439 Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D PDMSB3_0741 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_1514.1 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D PDMSB3_0582 dnaK; chaperone Hsp70 in DNA biosynthesis/cell division K04043 dnaK; molecular chaperone DnaK D PDMSB3_2761 Molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D PDMSB3_2038 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D PDMSB3_0958.1 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D PDMSB3_2766.1 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D PDMSB3_2566 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D PDMSB3_4082 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu D PDMSB3_4096 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu D PDMSB3_3985 hitA; Protein HitA K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PDMSB3_4370 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D PDMSB3_0254 yfeH; putative sodium/bile acid symporter family (mazG-like) K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D PDMSB3_1736 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_3902 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3] D PDMSB3_2158 56kDa selenium binding protein (SBP56) K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] D PDMSB3_0283 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1066 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1737 putative acyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1751 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1954 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_1960 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_2650.1 thlA; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_3067.1 bktB; Beta-ketothiolase BktB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PDMSB3_4173 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PDMSB3_3603 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PDMSB3_0429 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D PDMSB3_0966 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D PDMSB3_3611 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D PDMSB3_3003 dht; D-hydantoinase/dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D PDMSB3_0642 Fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D PDMSB3_3373 fbp; Fructose-1,6-bisphosphatase class 1 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D PDMSB3_0190.1 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D PDMSB3_3732 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PDMSB3_2213.1 Gamma-glutamyl-putrescine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_2901 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PDMSB3_4050 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D PDMSB3_0279.1 vllY; Hemolysin VllY K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PDMSB3_4118 vllY; Hemolysin VllY K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D PDMSB3_0633.1 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D PDMSB3_4324 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D PDMSB3_0100 Phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PDMSB3_3751 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D PDMSB3_3271 Zn-dependent protease with chaperone function K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D PDMSB3_1705 odhL; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2810.1 lpd; Dihydrolipoyl dehydrogenase 3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_2876 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D PDMSB3_0326.1 etfA; Electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D PDMSB3_1075 etfA; electron transfer flavoprotein alpha-subunit K03522 fixB; electron transfer flavoprotein alpha subunit D PDMSB3_1665.1 fixB; Protein FixB K03522 fixB; electron transfer flavoprotein alpha subunit D PDMSB3_2465.1 etfA; Electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D PDMSB3_3168.1 etfA; Electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D PDMSB3_3287 etfA; electron transfer flavoprotein alpha-subunit K03522 fixB; electron transfer flavoprotein alpha subunit D PDMSB3_3774 gdhA; Glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PDMSB3_0925 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_1301.1 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_3245.1 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D PDMSB3_1316 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PDMSB3_0361 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_2173.1 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (modular protein) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PDMSB3_1757.1 blc; Outer membrane lipoprotein Blc K03098 APOD; apolipoprotein D and lipocalin family protein D PDMSB3_2462 Outer membrane lipoprotein Blc K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:pdio02048] D PDMSB3_0172.1 Methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D PDMSB3_1163 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_2678 Cytosine-specific methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D PDMSB3_1643 Type I toxin-antitoxin system SymE family toxin K19048 symE; toxic protein SymE D PDMSB3_1650 Type I toxin-antitoxin system SymE family toxin K19048 symE; toxic protein SymE D PDMSB3_3281.1 conserved protein of unknown function K19048 symE; toxic protein SymE D PDMSB3_3290.1 conserved protein of unknown function K19048 symE; toxic protein SymE D PDMSB3_1215.1 yoeB; toxin of the YoeB-YefM toxin-antitoxin system K19158 yoeB; toxin YoeB [EC:3.1.-.-] D PDMSB3_1214.1 yefM; antitoxin of the YoeB-YefM toxin-antitoxin system K19159 yefM; antitoxin YefM D PDMSB3_0085.3 conserved protein of unknown function K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D PDMSB3_1604.1 hipA; regulator with hipB K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D PDMSB3_2045 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D PDMSB3_1605.1 DNA-directed RNA polymerase specialized sigma subunit K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D PDMSB3_0045.3 Antitoxin ParD1/3/4 K07746 parD1_3_4; antitoxin ParD1/3/4 D PDMSB3_2003 protein of unknown function K07746 parD1_3_4; antitoxin ParD1/3/4 D PDMSB3_1796 conserved protein of unknown function K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D PDMSB3_3371 higB; Toxin HigB-1 K07334 higB-1; toxin HigB-1 D PDMSB3_1797 putative transcription regulator containing HTH domain K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D PDMSB3_3372 Addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1 D PDMSB3_3884 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ D PDMSB3_0123 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_1729.1 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_1971.1 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins D PDMSB3_1181 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D PDMSB3_1180 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D PDMSB3_2639 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PDMSB3_0160.1 protein of unknown function K09159 cptB; antitoxin CptB D PDMSB3_1646.1 nifS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_1656.1 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PDMSB3_2865 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides [BR:pdio04052] D PDMSB3_1918.1 Nicotinamide phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12] C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:pdio01504] D PDMSB3_3210.1 str; Streptomycin 3''-kinase K04343 strB; streptomycin 6-kinase [EC:2.7.1.72] D PDMSB3_1061.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1330.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1525 irlS; Sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1715.1 Sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_2682.1 irlS; Sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D PDMSB3_1060.1 yedW; DNA-binding response regulator in two-component system with YedV K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1329.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1526 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1716.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_2683.1 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D PDMSB3_1278.1 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D PDMSB3_2304 conserved membrane protein of unknown function K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D PDMSB3_0157 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0247.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1058.1 putative Co/Zn/Cd efflux system membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1713.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_1876.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_2841.1 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_3661 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system D PDMSB3_0158 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_0248.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1057.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1712.1 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump D PDMSB3_1875.1 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump D PDMSB3_2840.1 bepE; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump D PDMSB3_3660 acrB; multidrug efflux system protein K18138 acrB; multidrug efflux pump D PDMSB3_0156 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0246.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0698.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_0754.1 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1147.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1697 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1714.1 Heavy metal RND efflux outer membrane protein, CzcC family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_1874.1 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2839.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2950.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_3084 fusA; Fusaric acid resistance protein FusA K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_3659 oprM; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_4351 Efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D PDMSB3_2376 RND family efflux transporter, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D PDMSB3_2377 Cation/multidrug efflux pump K18303 mexK; multidrug efflux pump D PDMSB3_2768.1 lasR; Transcriptional activator protein LasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D PDMSB3_1380 hmrR; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D PDMSB3_0993.1 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2118 Protein CyaE K12340 tolC; outer membrane protein D PDMSB3_2656.1 Type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D PDMSB3_0125.1 bvgA; putative Virulence factors positive transcription regulator BvgA K07690 evgA; two-component system, NarL family, response regulator EvgA D PDMSB3_0930 Transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_1111 Transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_1322.1 putative transcription regulator protein of MDR efflux pump cluster K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_2541.1 yhjC; Uncharacterized HTH-type transcriptional regulator YhjC K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_2589.1 Transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D PDMSB3_1109 RND efflux pump, membrane fusion protein, CzcB subfamily K18901 bpeE; membrane fusion protein, multidrug efflux system D PDMSB3_2539.1 putative Co/Zn/Cd efflux system membrane fusion protein K18901 bpeE; membrane fusion protein, multidrug efflux system D PDMSB3_1108 bepE; Efflux pump membrane transporter BepE K18902 bpeF; multidrug efflux pump D PDMSB3_2538.1 bepE; Efflux pump membrane transporter BepE K18902 bpeF; multidrug efflux pump D PDMSB3_1059.1 Outer membrane protein K18903 oprC; outer membrane protein, multidrug efflux system D PDMSB3_1107 RND efflux system, outer membrane lipoprotein, NodT family K18903 oprC; outer membrane protein, multidrug efflux system D PDMSB3_2537.1 Efflux transporter, outer membrane factor lipoprotein, NodT family K18903 oprC; outer membrane protein, multidrug efflux system C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:pdio00536] D PDMSB3_1642 Filamentous hemagglutinin family N-terminal domain K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pdio00537] D PDMSB3_1890.1 treA; periplasmic trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D PDMSB3_1496.1 Microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:pdio03100] D PDMSB3_TRNA10 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA2-2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA24 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA3-1 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA46 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA5-2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA53 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA7-2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PDMSB3_TRNA30 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA39 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA40 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA55 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA7-1 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PDMSB3_TRNA36 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PDMSB3_TRNA37 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PDMSB3_TRNA19 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PDMSB3_TRNA20 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PDMSB3_TRNA22 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PDMSB3_TRNA33 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D PDMSB3_TRNA4-1 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PDMSB3_TRNA21 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PDMSB3_TRNA23 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PDMSB3_TRNA34 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PDMSB3_TRNA35 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PDMSB3_TRNA42 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PDMSB3_TRNA51 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PDMSB3_TRNA15 tRNA-Ser K14226 tRNA-His; tRNA His D PDMSB3_TRNA16 tRNA-His K14226 tRNA-His; tRNA His D PDMSB3_TRNA1-2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA4-2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA47 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA54 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA6-2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA9 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PDMSB3_TRNA12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA13 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA17 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA27 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA43 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA8 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PDMSB3_TRNA1-1 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PDMSB3_TRNA1-3 Pseudo tRNA K14229 tRNA-Lys; tRNA Lys D PDMSB3_TRNA5-1 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PDMSB3_TRNA14 tRNA-Met K14230 tRNA-Met; tRNA Met D PDMSB3_TRNA26 tRNA-Met K14230 tRNA-Met; tRNA Met D PDMSB3_TRNA44 tRNA-Met K14230 tRNA-Met; tRNA Met D PDMSB3_TRNA2-1 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D PDMSB3_TRNA28 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PDMSB3_TRNA31 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PDMSB3_TRNA45 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PDMSB3_TRNA11 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PDMSB3_TRNA25 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PDMSB3_TRNA41 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PDMSB3_TRNA6-1 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PDMSB3_TRNA38 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PDMSB3_TRNA48 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PDMSB3_TRNA50 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PDMSB3_TRNA49 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D PDMSB3_TRNA52 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D PDMSB3_TRNA18 tRNA-Val K14237 tRNA-Val; tRNA Val D PDMSB3_TRNA29 tRNA-Val K14237 tRNA-Val; tRNA Val D PDMSB3_TRNA3-2 tRNA-Val K14237 tRNA-Val; tRNA Val D PDMSB3_TRNA32 tRNA-Val K14237 tRNA-Val; tRNA Val D PDMSB3_RRNA1-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA1-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA4-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA6-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA7-2 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA9-1 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PDMSB3_RRNA2-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA2-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA5-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA5-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA8-1 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA8-2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PDMSB3_RRNA3-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA3-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA4-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA6-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA7-1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_RRNA9-2 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PDMSB3_MISCRNA20 RNaseP_bact_a K01978 rnpB; RNase P catalytic RNA component D PDMSB3_TMRNA1 PDMSB3_TMRNA1 K15035 ssrA; transfer-messenger RNA D PDMSB3_MISCRNA4-1 6S K28358 ssrS; RNA polymerase binding 6S RNA D PDMSB3_MISCRN11-1 Bacteria_small_SRP K01983 ffs; signal recognition particle 4.5S RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D PDMSB3_2564.1 lcdH; L-carnitine dehydrogenase K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108] D PDMSB3_3354.1 dfrA; Putative dihydroflavonol 4-reductase K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219] D PDMSB3_0033.1 putative Benzil reductase ((S)-benzoin forming) K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320] D PDMSB3_2115.1 Uncharacterized oxidoreductase MSMEG_2408/MSMEI_2347 K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D PDMSB3_0942.1 denD; D-erythronate dehydrogenase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D PDMSB3_0937.1 ygbJ; putative dehydrogenase, with NAD(P)-binding Rossmann-fold domain K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411] D PDMSB3_0153 yghZ; aldo-keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D PDMSB3_3138.1 acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D PDMSB3_3137.1 acoB; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D PDMSB3_2546.1 yajO; aldoketo-oxidoreductase, NADP-binding K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D PDMSB3_4179 calB; putative coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D PDMSB3_2380.1 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase K23463 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase [EC:1.2.1.-] D PDMSB3_2780.1 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase K23463 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase [EC:1.2.1.-] D PDMSB3_0170 coxS; Carbon monoxide dehydrogenase small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D PDMSB3_2055.1 cutS; Carbon monoxide dehydrogenase small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D PDMSB3_2185 cutS; Carbon monoxide dehydrogenase small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D PDMSB3_0168 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D PDMSB3_0229 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D PDMSB3_2056.1 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D PDMSB3_2186 cutM; Carbon monoxide dehydrogenase medium chain K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D PDMSB3_0169 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D PDMSB3_2057.1 Carbon monoxide dehydrogenase large chain parolog without usual motifs K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D PDMSB3_2184 cutL; Carbon monoxide dehydrogenase large chain K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D PDMSB3_0246 Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D PDMSB3_1029 Indolepyruvate ferredoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D PDMSB3_3086.1 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D PDMSB3_4120 Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D PDMSB3_2976 fadH; 2,4-dienoyl-CoA reductase, NADH and FMN-linked K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D PDMSB3_2058 curA; NADPH-dependent curcumin reductase K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-] D PDMSB3_0597.1 pqqC; Pyrroloquinoline-quinone synthase K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D PDMSB3_1134.1 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D PDMSB3_0440.1 iorA; Isoquinoline 1-oxidoreductase subunit alpha K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D PDMSB3_1398.1 iorA; Isoquinoline 1-oxidoreductase subunit alpha K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D PDMSB3_0439.1 Isoquinoline 1-oxidoreductase beta subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D PDMSB3_1399.1 Isoquinoline 1-oxidoreductase beta subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D PDMSB3_0383.1 Putative dinucleotide-binding enzyme K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D PDMSB3_1777 Putative dinucleotide-binding enzyme (fragment) K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D PDMSB3_1779 putative dinucleotide-binding enzyme K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D PDMSB3_0345.1 etfD; putative electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D PDMSB3_3064 etfD; putative electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D PDMSB3_3066.1 etfD; putative electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D PDMSB3_1666.1 ydiS; putative oxidoreductase subunit with FAD/NAD(P)-binding domain K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] D PDMSB3_1030.1 qor; Quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PDMSB3_1037 qor; Quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PDMSB3_1275 qor; Quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PDMSB3_1943 Zn-dependent oxidoreductase, NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PDMSB3_3175.1 Zn-dependent oxidoreductase, NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D PDMSB3_1676.1 azoR; FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D PDMSB3_3928 azoR; FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D PDMSB3_1899.1 ahpF; alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D PDMSB3_2572.1 Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D PDMSB3_2844.1 msrA; Peptide methionine sulfoxide reductase MsrA 1 K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D PDMSB3_3629 msrA; Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D PDMSB3_2049 msrB; methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D PDMSB3_0760.1 yfcG; Disulfide-bond oxidoreductase YfcG K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D PDMSB3_1052 yfcG; Disulfide-bond oxidoreductase YfcG K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D PDMSB3_1167 Glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D PDMSB3_2534 yghU; S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D PDMSB3_1470 yqjG; S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D PDMSB3_4044 yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D PDMSB3_3133.1 Mn-containing catalase K07217 ydbD; manganese catalase [EC:1.11.1.6] D PDMSB3_0689.1 cpo; Non-heme chloroperoxidase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D PDMSB3_1250.1 cpo; Non-heme chloroperoxidase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D PDMSB3_1582 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PDMSB3_1900 bcp; Peroxiredoxin Bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PDMSB3_3848 tpx; lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PDMSB3_0636 putative antioxidant protein K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PDMSB3_3427 putative antioxidant protein K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D PDMSB3_1900.1 ahpC; alkyl hydroperoxide reductase, C22 subunit K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D PDMSB3_0210.1 ohr; Organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D PDMSB3_0913.1 ohr; Organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D PDMSB3_1962.1 osmC; osmotically inducible, stress-inducible membrane protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D PDMSB3_1985 ahpD; Alkyl hydroperoxide reductase AhpD K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D PDMSB3_1986 Alkyl hydroperoxide reductase C K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D PDMSB3_0722 Dyp-type peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D PDMSB3_1142 putative Quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D PDMSB3_1397 Pirin-like protein CC_0481 K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D PDMSB3_1896.1 Pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D PDMSB3_1622 dke; Acetylacetone-cleaving enzyme K20148 dke1; acetylacetone-cleaving enzyme [EC:1.13.11.50] D PDMSB3_2177 Alpha-ketoglutarate-dependent sulfate ester dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77] D PDMSB3_2286 putative alkylsulfatase (AtsK) K22303 atsK; alkyl sulfatase [EC:1.14.11.77] D PDMSB3_3241.1 PKHD-type hydroxylase Bxeno_B2756 K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D PDMSB3_0758.1 hmp; Flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D PDMSB3_2880.1 pvdA; L-ornithine N(5)-monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D PDMSB3_0784.1 Acyl-CoA dehydrogenase K22027 iacA; indole-3-acetate monooxygenase [EC:1.14.13.235] D PDMSB3_1541.1 dmoA; Dimethyl-sulfide monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28] D PDMSB3_2779.1 tgnB; Flavin-dependent trigonelline monooxygenase, oxygenase component K23464 tgnB; flavin-dependent trigonelline monooxygenase, oxygenase component [EC:1.14.14.-] D PDMSB3_1451 yxeK; putative monooxygenase YxeK K24116 scmK; N-acetyl-S-(2-succino)cysteine monooxygenase [EC:1.14.-.-] D PDMSB3_2156 yxeK; putative monooxygenase YxeK K24116 scmK; N-acetyl-S-(2-succino)cysteine monooxygenase [EC:1.14.-.-] D PDMSB3_2176 yxeK; putative monooxygenase YxeK K24116 scmK; N-acetyl-S-(2-succino)cysteine monooxygenase [EC:1.14.-.-] D PDMSB3_0800.1 Putative multicopper oxidase K22348 moxA; manganese oxidase [EC:1.16.3.3] D PDMSB3_3366.1 hpnE; Hydroxysqualene dehydroxylase K21677 hpnE; hydroxysqualene dehydroxylase [EC:1.17.8.1] D PDMSB3_0178 fpr; Ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D PDMSB3_0004.1 arsC; Putative arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D PDMSB3_0042.2 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D PDMSB3_3153.1 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D PDMSB3_0032.2 Protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D PDMSB3_2097.1 Arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D PDMSB3_0595.1 pqqE; PqqA peptide cyclase K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4] D PDMSB3_3122.1 Hydrogenase-4 component B / Formate hydrogenlyase subunit 3 K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-] D PDMSB3_3124.1 Hydrogenase-4 component E K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-] D PDMSB3_3125.1 hyfF; Hydrogenase-4 component F homolog K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-] D PDMSB3_0838 pcm; Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D PDMSB3_1945 pcm; Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D PDMSB3_0950 Methyltransferase, cyclopropane fatty acid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D PDMSB3_3261.1 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D PDMSB3_3627 putative fatty acid methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D PDMSB3_2127 tam; Trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D PDMSB3_1205.1 Malonyl CoA-acyl carrier protein transacylase K13935 mdcH; malonate decarboxylase epsilon subunit [EC:2.3.1.39] D PDMSB3_2107.1 Malonyl CoA-acyl carrier protein transacylase K13935 mdcH; malonate decarboxylase epsilon subunit [EC:2.3.1.39] D PDMSB3_1226.1 Arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D PDMSB3_3745 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D PDMSB3_2563.1 putative 3-keto-5-aminohexanoate cleavage enzyme K27837 cdhC; 3-dehydrocarnitine:acetyl-CoA trimethylamine transferase [EC:2.3.1.317] D PDMSB3_1829 aat; Leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D PDMSB3_1828 bpt; Aspartate/glutamate leucyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D PDMSB3_1210.1 mdcB; putative 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D PDMSB3_2112.1 mdcB; putative 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D PDMSB3_3367.1 hpnD; Presqualene diphosphate synthase K21678 hpnD; presqualene diphosphate synthase [EC:2.5.1.103] D PDMSB3_0868 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D PDMSB3_0938.1 otnK; 3-oxo-tetronate kinase K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D PDMSB3_2981.1 putative 3-oxo-isoapionate kinase K23247 oiaK; 3-oxoisoapionate kinase [EC:2.7.1.231] D PDMSB3_2576 ydiA; conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D PDMSB3_0572 glnE; Glutamine synthetase adenylyl-L-tyrosine phosphorylase / Glutamine synthetase adenylyl transferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D PDMSB3_0044.4 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D PDMSB3_2502.1 protein of unknown function K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D PDMSB3_1206.1 mdcG; Phosphoribosyl-dephospho-CoA transferase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66] D PDMSB3_2106.1 Phosphoribosyl-dephospho-CoA transferase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66] D PDMSB3_2050 conserved protein of unknown function K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D PDMSB3_0285 aceK; Isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D PDMSB3_0419 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D PDMSB3_1939 Succinyl-CoA--D-citramalate CoA-transferase K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20] D PDMSB3_0366 conserved protein of unknown function K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D PDMSB3_2565.1 Putative thioesterase K27492 cdhB; betainyl-CoA thioesterase [EC:3.1.2.33] D PDMSB3_0623 ybgC; acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PDMSB3_3062 Thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PDMSB3_3114 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PDMSB3_3358 Acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D PDMSB3_2838 yciV; conserved hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D PDMSB3_3149 Phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D PDMSB3_3458 EAL domain-containing protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D PDMSB3_1508.1 betC; Choline-sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6] D PDMSB3_2068 ycfH; putative metallodependent hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D PDMSB3_2850 yjjV; Uncharacterized metal-dependent hydrolase YjjV K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D PDMSB3_1085.1 bcsZ; endo-1,4-D-glucanase K20542 bcsZ; endoglucanase [EC:3.2.1.4] D PDMSB3_0477 dan; D-aminoacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D PDMSB3_0106 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D PDMSB3_2600 def; Peptide deformylase 1 K01462 PDF; peptide deformylase [EC:3.5.1.88] D PDMSB3_0570 Deaminated glutathione amidase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D PDMSB3_2778.1 Beta-ketoadipate enol-lactone hydrolase K23465 tgnD; (E)-2-((N-methylformamido)methylene)succinate hydrolase [EC:3.5.1.-] D PDMSB3_2420 8-oxoguanine deaminase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D PDMSB3_0060.1 Putative translation initiation inhibitor, yjgF family K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D PDMSB3_3411 yjgF; 2-iminobutanoate/2-iminopropanoate deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D PDMSB3_0687 nudD; GDP-mannose mannosyl hydrolase K03207 gmm; GDP-mannose mannosyl hydrolase [EC:3.6.1.-] D PDMSB3_1373.1 nudD; GDP-mannose mannosyl hydrolase K03207 gmm; GDP-mannose mannosyl hydrolase [EC:3.6.1.-] D PDMSB3_3222 yceF; hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D PDMSB3_2196 conserved protein of unknown function K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PDMSB3_2982.1 Uncharacterized ribulose bisphosphate carboxylase-like protein K01559 oiaT; 3-oxoisoapionate-4-phosphate transcarboxylase/hydrolase [EC:3.7.1.28] D PDMSB3_0270 putative esterase of the alpha/beta hydrolase fold K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D PDMSB3_1032.1 Putative esterase of the alpha/beta hydrolase fold K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D PDMSB3_3122 putative esterase of the alpha/beta hydrolase fold K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D PDMSB3_1208.1 Malonate decarboxylase beta subunit K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87] D PDMSB3_2110.1 madC; Malonyl-S-ACP:biotin-protein carboxyltransferase MADC K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87] D PDMSB3_1207.1 Malonate decarboxylase gamma subunit K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87] D PDMSB3_2109.1 Malonate decarboxylase gamma subunit K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87] D PDMSB3_0939.1 ygbL; putative class II aldolase K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D PDMSB3_0043 Altronate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5] D PDMSB3_2509 ohyA; Oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53] D PDMSB3_2039 nnrE; ADP-dependent (S)-NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D PDMSB3_3475 thadh; L-threo-3-hydroxyaspartate ammonia-lyase K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D PDMSB3_2522.1 Fucose dissimilation pathway protein FucU K02431 fucU; L-fucose mutarotase [EC:5.1.3.29] D PDMSB3_2079.1 rhaM; L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D PDMSB3_0941.1 Putative hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D PDMSB3_0259 icmF; Isobutyryl-CoA mutase / P-loop GTPase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D PDMSB3_0333.1 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K12508 fcs; feruloyl-CoA synthase [EC:6.2.1.34] D PDMSB3_1757 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D PDMSB3_2370.1 Long-chain-fatty-acid--CoA ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D PDMSB3_2480.1 Long-chain-fatty-acid--CoA ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D PDMSB3_3840 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D PDMSB3_1213 Electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D PDMSB3_1520 copA; Copper-exporting P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D PDMSB3_1018.1 pacL; Calcium-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D PDMSB3_0053 cadA; putative cadmium-transporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D PDMSB3_0404.1 mgtA; magnesium transporter K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D PDMSB3_1929.1 lutA; Lactate utilization protein A K18928 lldE; L-lactate dehydrogenase complex protein LldE D PDMSB3_2871 lutA; Lactate utilization protein A 2 K18928 lldE; L-lactate dehydrogenase complex protein LldE D PDMSB3_1928.1 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF K18929 lldF; L-lactate dehydrogenase complex protein LldF D PDMSB3_2870 lutB; Lactate utilization protein B K18929 lldF; L-lactate dehydrogenase complex protein LldF D PDMSB3_1927.1 conserved protein of unknown function K00782 lldG; L-lactate dehydrogenase complex protein LldG D PDMSB3_3237 conserved protein of unknown function K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D PDMSB3_0503 fdhD; Sulfur carrier protein FdhD K02379 fdhD; FdhD protein D PDMSB3_2344.1 Ferredoxin K05337 fer; ferredoxin D PDMSB3_3240 Ferredoxin 1 K05524 fdxA; ferredoxin D PDMSB3_1657.1 iscU; scaffold protein K04488 iscU; nitrogen fixation protein NifU and related proteins D PDMSB3_2864 iscU; iron-binding protein believed to be involved in Fe-S protein formation or repair; function as a scaffold for the assembly of the transiently bound Fe/S cluster K04488 iscU; nitrogen fixation protein NifU and related proteins D PDMSB3_1623.1 Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ K15790 nifQ; nitrogen fixation protein NifQ D PDMSB3_3181.1 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K13796 cobZ; tricarballylate dehydrogenase D PDMSB3_1627.1 nifX; Protein NifX K02596 nifX; nitrogen fixation protein NifX D PDMSB3_1645.1 fixU; Protein FixU homolog K02593 nifT; nitrogen fixation protein NifT D PDMSB3_1648.1 NifZ protein K02597 nifZ; nitrogen fixation protein NifZ D PDMSB3_1649.1 Nitrogen fixation protein NifZ K02597 nifZ; nitrogen fixation protein NifZ D PDMSB3_1654.1 nifB; FeMo cofactor biosynthesis protein NifB K02585 nifB; nitrogen fixation protein NifB D PDMSB3_1628.1 nifN; Nitrogenase iron-molybdenum cofactor biosynthesis protein NifN K02592 nifN; nitrogenase molybdenum-iron protein NifN D PDMSB3_1629.1 nifE; Nitrogenase iron-molybdenum cofactor biosynthesis protein NifE K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE D PDMSB3_0325.1 etfB; Electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D PDMSB3_1074 etfB; electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D PDMSB3_1664.1 fixA; Protein FixA K03521 fixA; electron transfer flavoprotein beta subunit D PDMSB3_2464.1 etfB; Electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D PDMSB3_3169.1 etfB; Electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D PDMSB3_3288 etfB; electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D PDMSB3_1667.1 fixX; putative 4Fe-4S ferredoxin K03855 fixX; ferredoxin like protein D PDMSB3_1663.1 nifW; Nitrogenase-stabilizing/protective protein NifW K02595 nifW; nitrogenase-stabilizing/protective protein D PDMSB3_2414 Dodecin K09165 K09165; dodecin C 99983 Lipid metabolism D PDMSB3_4178 aidB; putative acyl-CoA dehydrogenase AidB K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D PDMSB3_0561 yggS; putative enzyme K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D PDMSB3_3304 Uncharacterized integral membrane protein K08992 lapA; lipopolysaccharide assembly protein A D PDMSB3_3303 lapB; Lipopolysaccharide assembly protein B K19804 lapB; lipopolysaccharide assembly protein B D PDMSB3_0727 conserved membrane protein of unknown function K07027 K07027; glycosyltransferase 2 family protein D PDMSB3_0847.1 Glycosyltransferase involved in LPS biosynthesis K07270 K07270; glycosyl transferase, family 25 D PDMSB3_1086.1 bcsB; Cyclic di-GMP-binding protein K20541 bcsB; cellulose synthase operon protein B C 99987 Cofactor metabolism D PDMSB3_1437.1 cobW; Protein CobW K02234 cobW; cobalamin biosynthesis protein CobW D PDMSB3_0975 putative enzyme of heme biosynthesis K02498 hemY; HemY protein D PDMSB3_0490 ubiB; 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D PDMSB3_0489 conserved protein of unknown function K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D PDMSB3_0349 conserved protein of unknown function K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D PDMSB3_1440.1 ChlD component of cobalt chelatase involved in B12 biosynthesis K13580 K13580; magnesium chelatase subunit ChlD-like protein C 99988 Secondary metabolism D PDMSB3_3374.1 2-hydroxy-1,4-benzoquinone reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) D PDMSB3_3257.1 Ring-hydroxylating dioxygenase, large terminal subunit K22895 cruH; renierapurpurin 18,18'-hydroxylase C 99999 Others D PDMSB3_0886 putative oxidoreductase K15977 K15977; putative oxidoreductase D PDMSB3_1897.1 yphA; Inner membrane protein YphA K15977 K15977; putative oxidoreductase D PDMSB3_2520.1 yphA; Inner membrane protein YphA K15977 K15977; putative oxidoreductase D PDMSB3_2808.1 Putative membrane protein K15977 K15977; putative oxidoreductase D PDMSB3_0910.1 Putative esterase K06999 K06999; phospholipase/carboxylesterase D PDMSB3_1972.1 Putative esterase K06999 K06999; phospholipase/carboxylesterase D PDMSB3_0081.1 Protein acetyltransferase K09181 yfiQ; acetyltransferase D PDMSB3_1597.1 putative Acetyl-CoA synthetase (ADP-forming) alpha and beta chains K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D PDMSB3_0098.1 cspD; cold shock protein homolog K03704 cspA; cold shock protein D PDMSB3_0272.1 cspD; cold shock protein homolog K03704 cspA; cold shock protein D PDMSB3_2280 cspD; cold shock protein homolog K03704 cspA; cold shock protein D PDMSB3_3379 cspD; cold shock protein homolog K03704 cspA; cold shock protein D PDMSB3_3565 cspD; cold shock protein homolog K03704 cspA; cold shock protein D PDMSB3_3957 cspD; cold shock protein homolog K03704 cspA; cold shock protein D PDMSB3_0351 glnK; regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) K04752 glnK; nitrogen regulatory protein P-II 2 D PDMSB3_2811 yhgF; transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation D PDMSB3_0752.1 rbbA; fused ribosome-associated ATPase: ATP-binding protein; ATP-binding protein; putative membrane protein K13926 rbbA; ribosome-dependent ATPase D PDMSB3_2500 putative exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein D PDMSB3_1797.1 Putative exonuclease of the beta-lactamase fold involved in RNA processing K07577 K07577; putative mRNA 3-end processing factor C 99975 Protein processing D PDMSB3_3564 clpS; regulatory protein for ClpA substrate specificity K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D PDMSB3_2028 tig; Trigger factor K03545 tig; trigger factor D PDMSB3_4043 msrQ; Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D PDMSB3_0537.1 fdhE; Protein FdhE homolog K02380 fdhE; FdhE protein D PDMSB3_0817 ureE; Urease accessory protein UreE K03187 ureE; urease accessory protein D PDMSB3_0816 ureF; Urease accessory protein UreF K03188 ureF; urease accessory protein D PDMSB3_0815 ureG; urease accessory protein K03189 ureG; urease accessory protein D PDMSB3_0826 ureD; Urease accessory protein UreD K03190 ureD; urease accessory protein D PDMSB3_2570 smpB; trans-translation protein K03664 smpB; SsrA-binding protein D PDMSB3_0348 conserved protein of unknown function K07391 comM; magnesium chelatase family protein D PDMSB3_2621.1 Putative proteasome-type protease K07395 K07395; putative proteasome-type protease D PDMSB3_1396 putative redox protein, regulator of disulfide bond formation K07397 yhfA; putative redox protein D PDMSB3_3765 yhfA; Protein YhfA K07397 yhfA; putative redox protein D PDMSB3_4047 ResB protein required for cytochrome c biosynthesis K07399 resB; cytochrome c biogenesis protein D PDMSB3_0164 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family K07402 xdhC; xanthine dehydrogenase accessory factor D PDMSB3_3343 Xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor D PDMSB3_2027.1 Putative membrane-bound ClpP-class protease associated with aq_911 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D PDMSB3_0093 HNH endonuclease K07454 K07454; putative restriction endonuclease D PDMSB3_3545 yicR; protein associated with replication fork, possible DNA repair protein K03630 radC; DNA repair protein RadC D PDMSB3_3234 rmuC; DNA recombination protein RmuC homolog K09760 rmuC; DNA recombination protein RmuC D PDMSB3_0209 conserved protein of unknown function K07460 yraN; putative endonuclease D PDMSB3_1006 putative endonuclease containing a URI domain K07461 K07461; putative endonuclease D PDMSB3_0105 DNA protecting protein DprA K04096 smf; DNA processing protein D PDMSB3_0940 ycaJ; recombination protein K07478 ycaJ; putative ATPase D PDMSB3_3495 pinQ; putative site-specific recombinase; Qin prophage K14060 pinR; putative DNA-invertase from lambdoid prophage Rac D PDMSB3_0077.4 putative DNA primase/helicase K06919 K06919; putative DNA primase/helicase D PDMSB3_0156.2 conserved protein of unknown function K06919 K06919; putative DNA primase/helicase D PDMSB3_3401 putative DNA primase/helicase K06919 K06919; putative DNA primase/helicase D PDMSB3_1948 3'-5' exonuclease K07501 K07501; 3'-5' exonuclease D PDMSB3_1352.1 protein of unknown function K07481 K07481; transposase, IS5 family D PDMSB3_0032 insC; IS2 insertion element repressor InsA; KpLE2 phage-like element K07483 K07483; transposase D PDMSB3_0098.3 Mobile element protein K07483 K07483; transposase D PDMSB3_0107.2 insE; IS3 element protein InsE K07483 K07483; transposase D PDMSB3_0421.1 insC; IS2 insertion element repressor InsA; KpLE2 phage-like element K07483 K07483; transposase D PDMSB3_0510.1 transposase K07483 K07483; transposase D PDMSB3_1370 insC; IS2 insertion element repressor InsA; KpLE2 phage-like element K07483 K07483; transposase D PDMSB3_2388 conserved protein of unknown function K07483 K07483; transposase D PDMSB3_2427.1 insE; IS3 element protein InsE K07483 K07483; transposase D PDMSB3_2897.1 transposase K07483 K07483; transposase D PDMSB3_3423 insC; IS2 insertion element repressor InsA; KpLE2 phage-like element K07483 K07483; transposase D PDMSB3_3787 Mobile element protein K07483 K07483; transposase D PDMSB3_0001.3 transposase K07484 K07484; transposase D PDMSB3_0099.3 conserved protein of unknown function K07484 K07484; transposase D PDMSB3_0511.1 transposase K07484 K07484; transposase D PDMSB3_0516.1 transposase K07484 K07484; transposase D PDMSB3_3788 conserved protein of unknown function K07484 K07484; transposase D PDMSB3_3789 transposase K07484 K07484; transposase D PDMSB3_0018.4 transposase K07486 K07486; transposase D PDMSB3_0663.1 transposase K07486 K07486; transposase D PDMSB3_0977 transposase K07486 K07486; transposase D PDMSB3_2386 transposase K07486 K07486; transposase D PDMSB3_2445.1 transposase K07486 K07486; transposase D PDMSB3_2895.1 transposase K07486 K07486; transposase D PDMSB3_3196.1 transposase K07486 K07486; transposase D PDMSB3_3793 transposase K07486 K07486; transposase D PDMSB3_4029 transposase K07491 rayT; REP-associated tyrosine transposase D PDMSB3_1683 transposase K07492 K07492; putative transposase D PDMSB3_0003.3 transposase K07493 K07493; putative transposase D PDMSB3_0173 transposase K07493 K07493; putative transposase D PDMSB3_2422.1 transposase K07493 K07493; putative transposase D PDMSB3_0033 insD; IS2 insertion element transposase InsAB'; KpLE2 phage-like element K07497 K07497; putative transposase D PDMSB3_0108.2 insF; IS3 element protein InsF K07497 K07497; putative transposase D PDMSB3_0231.2 Integrase core domain protein K07497 K07497; putative transposase D PDMSB3_0420.1 insD; IS2 insertion element transposase InsAB'; KpLE2 phage-like element K07497 K07497; putative transposase D PDMSB3_1371 transposase (fragment) K07497 K07497; putative transposase D PDMSB3_2387 insF; transposase K07497 K07497; putative transposase D PDMSB3_2426.1 insF; IS3 element protein InsF K07497 K07497; putative transposase D PDMSB3_2443.1 Integrase-like protein K07497 K07497; putative transposase D PDMSB3_2896.1 transposase K07497 K07497; putative transposase D PDMSB3_3424 insD; IS2 insertion element transposase InsAB'; KpLE2 phage-like element K07497 K07497; putative transposase D PDMSB3_1995 Integrase K14059 int; integrase C 99979 Viral proteins C 99998 Others D PDMSB3_2393 Phage shock protein A (IM30), suppresses sigma54-dependent transcription K03969 pspA; phage shock protein A D PDMSB3_1937 ybaB; conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D PDMSB3_0668.1 Outer membrane protein (Porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_0920 Outer membrane protein (Porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_1851.1 Outer membrane protein (Porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_1981.1 Outer membrane protein (Porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_2754.1 Outer membrane protein (porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_3009.1 Outer membrane protein (Porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_3045.1 Outer membrane protein (Porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_3056.1 Outer membrane protein (Porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_3382 Outer membrane protein (Porin) K03285 TC.GBP; general bacterial porin, GBP family D PDMSB3_0610 Amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D PDMSB3_0175 yhdG; Uncharacterized amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D PDMSB3_1495 acrB; Multidrug efflux pump subunit AcrB K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D PDMSB3_2627.1 dtpB; Dipeptide and tripeptide permease B K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D PDMSB3_1895 pit; putative low-affinity inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D PDMSB3_2740.1 pitA; Low-affinity inorganic phosphate transporter 1 K03306 TC.PIT; inorganic phosphate transporter, PiT family D PDMSB3_1200 mctP; Monocarboxylate transport permease protein K03307 TC.SSS; solute:Na+ symporter, SSS family D PDMSB3_1817.1 yhjB; Uncharacterized symporter YhjB K03307 TC.SSS; solute:Na+ symporter, SSS family D PDMSB3_2595.1 mctP; Monocarboxylate transport permease protein K03307 TC.SSS; solute:Na+ symporter, SSS family D PDMSB3_3252 panS; Pantothenate precursors transporter PanS K03453 TC.BASS; bile acid:Na+ symporter, BASS family D PDMSB3_0939 putative hydroxymethylpyrimidine transporter CytX K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D PDMSB3_2430 putative permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D PDMSB3_3004 pucI; putative allantoin permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D PDMSB3_2649.1 yeiM; putative sodium/proton nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family D PDMSB3_0810 Membrane protein involved in the export of O-antigen and teichoic acid K03328 TC.PST; polysaccharide transporter, PST family D PDMSB3_0649 Aspartate-alanine antiporter K07085 K07085; putative transport protein D PDMSB3_0650 conserved membrane protein of unknown function K07085 K07085; putative transport protein C 99978 Cell growth D PDMSB3_2048 putative intracellular septation protein A K06190 ispZ; intracellular septation protein D PDMSB3_2501.1 Putative cassette chromosome recombinase resolvase, CcrB like protein K06400 spoIVCA; site-specific DNA recombinase D PDMSB3_2333 ycgB; conserved hypothetical protein K06415 spoVR; stage V sporulation protein R C 99993 Cell motility D PDMSB3_0077.1 ecpD; periplasmic pilin chaperone K15540 ecpD; chaperone protein EcpD D PDMSB3_3455 ecpD; periplasmic pilin chaperone K15540 ecpD; chaperone protein EcpD C 99995 Signaling proteins D PDMSB3_2261 Activator of osmoprotectant transporter ProP K03607 proQ; ProP effector D PDMSB3_1700 bipA; GTP-binding protein K06207 typA; GTP-binding protein D PDMSB3_0600 CBS-domain-containing membrane protein K07168 K07168; CBS domain-containing membrane protein D PDMSB3_3741 ybeZ; putative enzyme with nucleoside triphosphate hydrolase domain K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D PDMSB3_1898 PhoH family protein K07175 phoH2; PhoH-like ATPase D PDMSB3_2335 yeaG; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K07180 prkA; serine protein kinase D PDMSB3_0448.1 RecA-superfamily ATPase possibly involved in signal transduction K08482 kaiC; circadian clock protein KaiC D PDMSB3_2936.1 RecA-superfamily ATPase possibly involved in signal transduction K08482 kaiC; circadian clock protein KaiC D PDMSB3_3613 conserved protein of unknown function K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D PDMSB3_0936 lolA; Outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein D PDMSB3_0413 lolB; Outer-membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D PDMSB3_1102 Phospholipid-binding lipoprotein MlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA D PDMSB3_3363.1 Surface lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D PDMSB3_4004 Surface lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D PDMSB3_0040.4 conserved exported protein of unknown function K06077 slyB; outer membrane lipoprotein SlyB D PDMSB3_3850 pcp; Outer membrane lipoprotein pcp K06077 slyB; outer membrane lipoprotein SlyB D PDMSB3_2584 Outer membrane protein (OmpH-like) K06142 hlpA; outer membrane protein D PDMSB3_0898.1 Membrane proteins related to metalloendopeptidases K06194 nlpD; lipoprotein NlpD D PDMSB3_1394.1 Membrane proteins related to metalloendopeptidases K06194 nlpD; lipoprotein NlpD D PDMSB3_1426.1 Membrane proteins related to metalloendopeptidases K06194 nlpD; lipoprotein NlpD D PDMSB3_1946 Lipoprotein NlpD/LppB homolog K06194 nlpD; lipoprotein NlpD D PDMSB3_0021.3 Capsular biosynthesis protein K07265 kpsS; capsular polysaccharide export protein D PDMSB3_0032.3 Capsule polysaccharide biosynthesis K07266 kpsC; capsular polysaccharide export protein D PDMSB3_2409 Outer membrane protein W K07275 ompW; outer membrane protein D PDMSB3_4030 Outer membrane protein W K07275 ompW; outer membrane protein D PDMSB3_4131 Outer membrane protein W K07275 ompW; outer membrane protein D PDMSB3_1973 conserved protein of unknown function K07290 yhjG; AsmA family protein D PDMSB3_0753.1 yhiI; putative HlyD family secretion protein K01993 ABC-2.TX; HlyD family secretion protein D PDMSB3_0725.1 Multidrug resistance efflux pump K02005 ABC.CD.TX; HlyD family secretion protein D PDMSB3_2981 osmB; Osmotically-inducible lipoprotein B K04062 osmB; osmotically inducible lipoprotein OsmB D PDMSB3_2826 conserved protein of unknown function K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D PDMSB3_0025.2 phoU; negative regulator of PhoR/PhoB two-component regulator K02039 phoU; phosphate transport system protein D PDMSB3_3155 phoU; negative regulator of PhoR/PhoB two-component regulator K02039 phoU; phosphate transport system protein D PDMSB3_4052 conserved protein of unknown function K03926 cutA; periplasmic divalent cation tolerance protein D PDMSB3_0245 cutC; Copper homeostasis protein CutC K06201 cutC; copper homeostasis protein D PDMSB3_0926.1 phnK; carbon-phosphorus lyase complex subunit K05781 phnK; putative phosphonate transport system ATP-binding protein D PDMSB3_3919 apaG; Protein ApaG K06195 apaG; ApaG protein D PDMSB3_4040 cyaY; frataxin, iron-binding and oxidizing protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D PDMSB3_2394.1 Hemerythrin-like metal-binding domain protein K07216 hr; hemerythrin D PDMSB3_0043.2 putative Monooxygenase K07222 K07222; putative flavoprotein involved in K+ transport D PDMSB3_0912 conserved protein of unknown function K07222 K07222; putative flavoprotein involved in K+ transport D PDMSB3_3021 Flavin-dependent oxidoreductase, MSMEG_0569 family K07222 K07222; putative flavoprotein involved in K+ transport B B 09194 Poorly characterized C 99996 General function prediction only D PDMSB3_0177.1 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D PDMSB3_3188 elaA; Protein ElaA K02348 elaA; ElaA protein D PDMSB3_2459 chaB; putative cation transport regulator ChaB K06197 chaB; cation transport regulator D PDMSB3_0611.1 pqqA; Coenzyme PQQ synthesis protein A K06135 pqqA; pyrroloquinoline quinone biosynthesis protein A D PDMSB3_3144.1 pqqA; Coenzyme PQQ synthesis protein A (modular protein) K06135 pqqA; pyrroloquinoline quinone biosynthesis protein A D PDMSB3_0598.1 pqqB; Coenzyme PQQ synthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B D PDMSB3_0596.1 pqqD; PqqA binding protein K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D PDMSB3_3145.1 Coenzyme PQQ synthesis protein D K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D PDMSB3_1288 yjbI; Group 2 truncated hemoglobin YjbI K06886 glbN; hemoglobin D PDMSB3_1635.1 glbO; Group 2 truncated hemoglobin GlbO K06886 glbN; hemoglobin D PDMSB3_1916 Hemoglobin K06886 glbN; hemoglobin D PDMSB3_1387 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein D PDMSB3_1563 rssA; NTE family protein RssA K07001 K07001; NTE family protein D PDMSB3_2019 NTE family protein K07001 K07001; NTE family protein D PDMSB3_2641 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein D PDMSB3_2842.1 Putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein D PDMSB3_1600.1 2-haloalkanoic acid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D PDMSB3_1658.1 yadR; putative chaperone involved in Fe-S cluster assembly and activation; hesB-like K15724 erpA; iron-sulfur cluster insertion protein D PDMSB3_3761 putative chaperone involved in Fe-S cluster assembly and activation (HesB-like) K15724 erpA; iron-sulfur cluster insertion protein D PDMSB3_0584.1 Ribonuclease BN K07058 K07058; membrane protein D PDMSB3_2619.1 Ribonuclease BN K07058 K07058; membrane protein D PDMSB3_3074 conserved membrane protein of unknown function K07058 K07058; membrane protein D PDMSB3_2458 putative phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D PDMSB3_1232 conserved protein of unknown function K07146 K07146; UPF0176 protein D PDMSB3_1202 conserved protein of unknown function K04750 phnB; PhnB protein D PDMSB3_1250 conserved protein of unknown function K04750 phnB; PhnB protein D PDMSB3_0441 conserved exported protein of unknown function K11477 glcG; glc operon protein GlcG D PDMSB3_1053 glcG; conserved hypothetical protein K11477 glcG; glc operon protein GlcG D PDMSB3_2103 glcG; conserved hypothetical protein K11477 glcG; glc operon protein GlcG D PDMSB3_0055.3 Adsorption protein B K11740 nfrB; bacteriophage N4 adsorption protein B D PDMSB3_0018.2 Arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH D PDMSB3_3154.1 arsH; NADPH-dependent FMN reductase ArsH K11811 arsH; arsenical resistance protein ArsH D PDMSB3_2885.1 Ferric reductase K13255 fhuF; ferric iron reductase protein FhuF D PDMSB3_3187 putative membrane protein K02351 K02351; putative membrane protein D PDMSB3_2450 conserved protein of unknown function K03744 lemA; LemA protein D PDMSB3_3044.1 conserved exported protein of unknown function K03744 lemA; LemA protein D PDMSB3_3241 conserved protein of unknown function K05805 creA; CreA protein D PDMSB3_0176.1 DedD protein K03749 dedD; DedD protein D PDMSB3_0595 dedA; conserved hypothetical protein; putative inner membrane protein K03975 dedA; membrane-associated protein D PDMSB3_4172 yvlD; Uncharacterized membrane protein YvlD K08972 K08972; putative membrane protein D PDMSB3_3177 putative membrane protein K08983 K08983; putative membrane protein D PDMSB3_1939.1 Putative outer membrane protein K08995 K08995; putative membrane protein D PDMSB3_0280 conserved protein of unknown function K09858 K09858; SEC-C motif domain protein D PDMSB3_1331.1 yjdM; Protein YjdM K06193 phnA; protein PhnA C 99997 Function unknown D PDMSB3_0648.1 Ankyrin repeat-containing protein K06867 K06867; uncharacterized protein D PDMSB3_1637.1 Ankyrin repeat-containing protein K06867 K06867; uncharacterized protein D PDMSB3_1767.1 Ankyrin repeat-containing protein K06867 K06867; uncharacterized protein D PDMSB3_2069 Ankyrin repeat-containing protein K06867 K06867; uncharacterized protein D PDMSB3_2787 Ankyrin repeat protein K06867 K06867; uncharacterized protein D PDMSB3_2449 Beta-propeller domain-containing protein, methanol dehydrogenase K06872 K06872; uncharacterized protein D PDMSB3_1774 Ketosteroid isomerase-like protein K06893 K06893; uncharacterized protein D PDMSB3_3878 putative ATPase (AAA+ superfamily) K06923 K06923; uncharacterized protein D PDMSB3_0393.1 protein of unknown function K06934 K06934; uncharacterized protein D PDMSB3_0266 putative Fe-S protein K06938 K06938; uncharacterized protein D PDMSB3_1161.1 conserved protein of unknown function K06938 K06938; uncharacterized protein D PDMSB3_2408 putative Fe-S protein K06938 K06938; uncharacterized protein D PDMSB3_3487 conserved protein of unknown function K06940 K06940; uncharacterized protein D PDMSB3_3856 conserved protein of unknown function K06950 K06950; uncharacterized protein D PDMSB3_0948 putative NAD/FAD-binding protein K06954 K06954; uncharacterized protein D PDMSB3_0917.1 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D PDMSB3_3252.1 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D PDMSB3_1056.1 Putative dioxygenase of extradiol dioxygenase family K06991 K06991; uncharacterized protein D PDMSB3_0536 Lactoylglutathione lyase family protein K06996 K06996; uncharacterized protein D PDMSB3_3839 yqiA; Esterase YqiA K07000 K07000; uncharacterized protein D PDMSB3_2332.1 conserved membrane protein of unknown function K07003 K07003; uncharacterized protein D PDMSB3_2429.1 conserved membrane protein of unknown function K07003 K07003; uncharacterized protein D PDMSB3_3362.1 putative protein export membrane protein, SecD/SecF family K07003 K07003; uncharacterized protein D PDMSB3_0890.1 putative PPOX class FMN-dependent enzyme, DR_2398 family K07006 K07006; uncharacterized protein D PDMSB3_2230.1 Flavodoxin reductase family protein K07006 K07006; uncharacterized protein D PDMSB3_0321 putative hydrolase of the alpha/beta superfamily K07018 K07018; uncharacterized protein D PDMSB3_3690 putative hydrolase of the alpha/beta-hydrolase fold K07019 K07019; uncharacterized protein D PDMSB3_2494 conserved protein of unknown function K07028 K07028; uncharacterized protein D PDMSB3_3227.1 Putative lactoylglutathione lyase K07032 K07032; uncharacterized protein D PDMSB3_1270.1 Putative metal-dependent hydrolase K07044 K07044; uncharacterized protein D PDMSB3_1282.1 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D PDMSB3_0529.1 yraQ; putative permease K07089 K07089; uncharacterized protein D PDMSB3_0185.1 putative membrane transporter protein K07090 K07090; uncharacterized protein D PDMSB3_0678 putative membrane transporter protein K07090 K07090; uncharacterized protein D PDMSB3_0812.1 putative membrane transporter protein K07090 K07090; uncharacterized protein D PDMSB3_2704.1 putative membrane transporter protein K07090 K07090; uncharacterized protein D PDMSB3_2752.1 Alkaline phosphatase K07093 K07093; uncharacterized protein D PDMSB3_2915 Phosphoesterase K07095 K07095; uncharacterized protein D PDMSB3_1201.1 Putative phosphohydrolase K07098 K07098; uncharacterized protein D PDMSB3_2813 putative nucleotide phosphoribosyltransferase K07101 K07101; uncharacterized protein D PDMSB3_2085.1 GENE II AND X PROTEINS K07112 K07112; uncharacterized protein D PDMSB3_2086.1 putative transmembrane protein K07112 K07112; uncharacterized protein D PDMSB3_2493.1 putative Histone-lysine N-methyltransferase K07117 K07117; uncharacterized protein D PDMSB3_2819.1 SET domain-containing protein K07117 K07117; uncharacterized protein D PDMSB3_4328 SET domain-containing protein K07117 K07117; uncharacterized protein D PDMSB3_1638 putative NADH-flavin reductase protein K07118 K07118; uncharacterized protein D PDMSB3_3024 conserved protein of unknown function K07123 K07123; uncharacterized protein D PDMSB3_4372 conserved protein of unknown function K07124 K07124; uncharacterized protein D PDMSB3_0366.1 TPR repeat-containing protein K07126 K07126; uncharacterized protein D PDMSB3_0482.1 Sel1 repeat protein K07126 K07126; uncharacterized protein D PDMSB3_4106 conserved protein of unknown function K07137 K07137; uncharacterized protein D PDMSB3_2108 putative Fe-S protein K07140 K07140; MOSC domain-containing protein D PDMSB3_0417 Peptidase S16, lon domain protein K07157 K07157; uncharacterized protein D PDMSB3_0166 Protein containing von Willebrand factor type A (VWA) domain K07161 K07161; uncharacterized protein D PDMSB3_4390 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein D PDMSB3_0129.1 conserved protein of unknown function K09005 K09005; uncharacterized protein D PDMSB3_3568 conserved exported protein of unknown function K09005 K09005; uncharacterized protein D PDMSB3_0233.1 GatB protein K09117 K09117; uncharacterized protein D PDMSB3_4135 conserved protein of unknown function K09122 K09122; uncharacterized protein D PDMSB3_0610.1 conserved protein of unknown function K09154 K09154; uncharacterized protein D PDMSB3_0324 conserved protein of unknown function K09158 K09158; uncharacterized protein D PDMSB3_0165 conserved protein of unknown function K09386 K09386; uncharacterized protein D PDMSB3_0228 conserved protein of unknown function K09386 K09386; uncharacterized protein D PDMSB3_0949 conserved protein of unknown function K09701 K09701; uncharacterized protein D PDMSB3_3821 conserved protein of unknown function K09705 K09705; uncharacterized protein D PDMSB3_2719.1 FAD:protein FMN transferase K09740 K09740; uncharacterized protein D PDMSB3_2334 yeaH; conserved hypothetical protein K09786 K09786; uncharacterized protein D PDMSB3_3601 conserved protein of unknown function K09791 K09791; uncharacterized protein D PDMSB3_0400.1 conserved protein of unknown function K09794 K09794; uncharacterized protein D PDMSB3_2568 yfjF; hypothetical protein K09801 K09801; uncharacterized protein D PDMSB3_1356 yaaA; conserved hypothetical protein; family UPF0246 K09861 K09861; uncharacterized protein D PDMSB3_3876 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein D PDMSB3_1756.1 conserved protein of unknown function K09915 K09915; uncharacterized protein D PDMSB3_1007 conserved protein of unknown function K09919 K09919; uncharacterized protein D PDMSB3_1128 conserved protein of unknown function K09919 K09919; uncharacterized protein D PDMSB3_0146 conserved protein of unknown function K09921 K09921; uncharacterized protein D PDMSB3_3313 conserved exported protein of unknown function K09924 K09924; uncharacterized protein D PDMSB3_0052.1 Putative cytoplasmic protein clustered with trehalase K09927 K09927; uncharacterized protein D PDMSB3_2805.1 conserved protein of unknown function K09930 K09930; uncharacterized protein D PDMSB3_0498.1 conserved protein of unknown function K09934 K09934; uncharacterized protein D PDMSB3_2816 conserved protein of unknown function K09937 K09937; uncharacterized protein D PDMSB3_0163 conserved membrane protein of unknown function K09939 K09939; uncharacterized protein D PDMSB3_2062.1 putative transmembrane protein K09939 K09939; uncharacterized protein D PDMSB3_3240.1 putative transmembrane protein K09939 K09939; uncharacterized protein D PDMSB3_3963 conserved protein of unknown function K09941 K09941; uncharacterized protein D PDMSB3_1865 conserved protein of unknown function K09954 K09954; uncharacterized protein D PDMSB3_1268.1 conserved protein of unknown function K09957 K09957; uncharacterized protein D PDMSB3_0018.1 conserved protein of unknown function K09958 K09958; uncharacterized protein D PDMSB3_0050 conserved protein of unknown function K09959 K09959; uncharacterized protein D PDMSB3_2712 conserved protein of unknown function K09960 K09960; uncharacterized protein D PDMSB3_2714 conserved protein of unknown function K09961 K09961; uncharacterized protein D PDMSB3_1722.1 Urea carboxylase-related aminomethyltransferase K09967 K09967; uncharacterized protein D PDMSB3_1723.1 Urea carboxylase-related aminomethyltransferase K09967 K09967; uncharacterized protein D PDMSB3_3189 conserved protein of unknown function K09973 K09973; uncharacterized protein D PDMSB3_4164 conserved protein of unknown function K09973 K09973; uncharacterized protein D PDMSB3_1543 conserved protein of unknown function K09975 K09975; uncharacterized protein D PDMSB3_2621 conserved protein of unknown function K09977 K09977; uncharacterized protein D PDMSB3_2583.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K09981 K09981; uncharacterized protein D PDMSB3_1163.1 conserved protein of unknown function K09983 K09983; uncharacterized protein D PDMSB3_1206 conserved protein of unknown function K09989 K09989; uncharacterized protein D PDMSB3_0486.1 conserved protein of unknown function K09990 K09990; uncharacterized protein D PDMSB3_1894 putative low-affinity phosphate transport accessory protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 4, 2025