+F Repair protein KO #

  DNA Repair and Recombination Proteins - Paraburkholderia dioscoreae

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PDMSB3_3618 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PDMSB3_2851.1 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PDMSB3_0209.1 phrA; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PDMSB3_3927 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PDMSB3_1411.1 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PDMSB3_0416 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PDMSB3_1212 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E PDMSB3_1925.1 DNA helicase, Rad3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PDMSB3_3877 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PDMSB3_2526 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PDMSB3_3560 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PDMSB3_3618 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PDMSB3_2851.1 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PDMSB3_4359 ada; Methylphosphotriester-DNA--protein-cysteine S-methyltransferase / Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PDMSB3_0209.1 phrA; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PDMSB3_3927 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PDMSB3_0870.1 Uracil-DNA glycosylase family domain protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PDMSB3_3022.1 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PDMSB3_2622 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PDMSB3_4358 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PDMSB3_2657 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PDMSB3_1411.1 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PDMSB3_0416 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PDMSB3_4252 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PDMSB3_0415 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PDMSB3_1212 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PDMSB3_0878.1 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PDMSB3_0129 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PDMSB3_2897 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PDMSB3_2855 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PDMSB3_0221.1 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PDMSB3_3375 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E PDMSB3_0435 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E PDMSB3_1478 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E PDMSB3_1389 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B E PDMSB3_3193 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E PDMSB3_3246 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PDMSB3_3094 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PDMSB3_0221.1 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] E PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PDMSB3_4088 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PDMSB3_4087 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PDMSB3_4054 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PDMSB3_3387 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PDMSB3_1982 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PDMSB3_2800 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PDMSB3_0594 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E PDMSB3_3599 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PDMSB3_0226.1 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PDMSB3_1233 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PDMSB3_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PDMSB3_0863 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PDMSB3_3797 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PDMSB3_2066 DNA polymerase III, delta'' subunit (fragment) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PDMSB3_3378 Exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PDMSB3_1936 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PDMSB3_3246 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PDMSB3_3094 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PDMSB3_0437 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PDMSB3_1162 vsr; DNA mismatch endonuclease of very short patch repair K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PDMSB3_1669 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PDMSB3_1668 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PDMSB3_1130 protein of unknown function K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PDMSB3_1670 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PDMSB3_3701 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E PDMSB3_3754 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA E PDMSB3_3755 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PDMSB3_3753 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PDMSB3_4290 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PDMSB3_1890 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N E PDMSB3_0002.4 Metallophosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PDMSB3_3701 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E PDMSB3_2616 radA; repair protein radA homolog K04485 radA; DNA repair protein RadA/Sms E PDMSB3_0553 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PDMSB3_2855 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PDMSB3_3202 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PDMSB3_1938 recR; gap repair protein K06187 recR; recombination protein RecR E PDMSB3_0573 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E PDMSB3_1244 rdgC; Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E PDMSB3_3754 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA E PDMSB3_3755 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PDMSB3_3753 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E PDMSB3_0002.4 Metallophosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E PDMSB3_1965 ku; Non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku E PDMSB3_1966 ligD; 3'-phosphoesterase / DNA ligase D / DNA repair polymerase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PDMSB3_3314 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PDMSB3_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PDMSB3_1942.1 DNA topoisomerase IB (poxvirus type) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PDMSB3_4335 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta F PDMSB3_2198.1 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta F PDMSB3_2495.1 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta F PDMSB3_2032 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PDMSB3_2855 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PDMSB3_3202 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PDMSB3_1938 recR; gap repair protein K06187 recR; recombination protein RecR F PDMSB3_2601 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PDMSB3_3750 putative Fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PDMSB3_3049 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F PDMSB3_3305 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F PDMSB3_4086 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PDMSB3_3375 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F PDMSB3_0435 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F PDMSB3_1478 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F PDMSB3_1389 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B F PDMSB3_4245 Histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F PDMSB3_0070.1 DNA-binding protein Bv3F K03746 hns; DNA-binding protein H-NS F PDMSB3_0275.1 conserved protein of unknown function K03746 hns; DNA-binding protein H-NS F PDMSB3_2096.1 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F PDMSB3_0202 DNA-binding protein Bv3F K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PDMSB3_1062.1 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D PDMSB3_3701 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D PDMSB3_1872 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D PDMSB3_0573 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D PDMSB3_2227.1 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PDMSB3_0010.2 conserved protein of unknown function K14160 imuA; protein ImuA D PDMSB3_1375 conserved protein of unknown function K14160 imuA; protein ImuA D PDMSB3_0009.2 Protein ImuB K14161 imuB; protein ImuB D PDMSB3_1376 Nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB D PDMSB3_0008.2 dnaE; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PDMSB3_1377 dnaE; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PDMSB3_0437 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PDMSB3_3700 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PDMSB3_4276 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PDMSB3_2807 yoaA; putative ATP-dependent DNA helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PDMSB3_1951.1 Lhr-like helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D PDMSB3_2609.1 Helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D PDMSB3_3877 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PDMSB3_2526 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PDMSB3_3560 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PDMSB3_3854 nrdA; ribonucleoside diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PDMSB3_1384.1 Ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PDMSB3_3853 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024