+D GENES KO
#
KEGG Orthology (KO) - Pyrodictium delaneyi
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pdl00010]
D Pyrde_0899 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Pyrde_0050 D-fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Pyrde_0049 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Pyrde_1673 NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D Pyrde_1674 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Pyrde_1131 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Pyrde_1645 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Pyrde_1716 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Pyrde_1059 Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_0268 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_1448 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_0267 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_1449 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_0270 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_1446 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_0269 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1447 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1713 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pyrde_1714 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pyrde_0366 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pyrde_1729 Acyl-CoA synthetase (NDP forming) K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D Pyrde_0750 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D Pyrde_0972 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Pyrde_0538 putative aldehyde ferredoxin oxidoreductase K11389 gapor; glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) [EC:1.2.7.6]
D Pyrde_0274 hypothetical protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:pdl00020]
D Pyrde_1539 isopropylmalate/homocitrate/citramalate synthase-like protein K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3]
D Pyrde_1536 Isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_1713 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pyrde_1714 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pyrde_0793 Succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Pyrde_0794 Succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Pyrde_1917 Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pyrde_1920 Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pyrde_1918 putative succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Pyrde_1919 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Pyrde_1915 L(+)-tartrate dehydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Pyrde_1916 L(+)-tartrate dehydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Pyrde_0268 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_1448 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_0267 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_1449 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_0270 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_1446 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_0269 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1447 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:pdl00030]
D Pyrde_0899 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Pyrde_0944 Transketolase, N-terminal region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pyrde_0945 Transketolase, C-terminal region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pyrde_0985 Ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Pyrde_1086 3-hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D Pyrde_0680 hexulose-6-phosphate synthase K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27]
D Pyrde_1693 Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Pyrde_1176 Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D Pyrde_0972 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Pyrde_1813 ribose 1,5-bisphosphate isomerase K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29]
D Pyrde_1814 putative translation initiation factor eIF-2B subunit 2 K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29]
D Pyrde_0280 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Pyrde_1747 Tungsten-containing aldehyde:ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Pyrde_0326 Tungsten-containing formaldehyde:ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Pyrde_1440 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Pyrde_0332 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Pyrde_0050 D-fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:pdl00040]
D Pyrde_0887 hypothetical protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D Pyrde_1304 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:pdl00051]
D Pyrde_0899 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Pyrde_0972 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Pyrde_1304 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D Pyrde_1395 Fumarylacetoacetate hydrolase family protein K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D Pyrde_0369 mannosyl-3-phosphoglycerate synthase K05947 E2.4.1.217; mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217]
D Pyrde_0368 Putative mannosyl-3-phosphoglycerate phosphatase K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]
D Pyrde_0050 D-fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Pyrde_0049 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:pdl00052]
D Pyrde_1945 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Pyrde_0972 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:pdl00500]
D Pyrde_0274 hypothetical protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Pyrde_0972 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Pyrde_0899 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pdl00520]
D Pyrde_0274 hypothetical protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Pyrde_1696 Glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Pyrde_1774 acetyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
D Pyrde_0972 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Pyrde_1945 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Pyrde_0899 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
C 00620 Pyruvate metabolism [PATH:pdl00620]
D Pyrde_0366 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pyrde_0268 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_1448 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_0267 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_1449 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_0270 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_1446 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_0269 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1447 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1713 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pyrde_1714 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_1716 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Pyrde_1237 Pyruvate carboxyl transferase subunit A K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Pyrde_1452 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Pyrde_1729 Acyl-CoA synthetase (NDP forming) K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D Pyrde_0750 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D Pyrde_0331 hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Pyrde_1925 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Pyrde_1915 L(+)-tartrate dehydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Pyrde_1916 L(+)-tartrate dehydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Pyrde_0019 Phosphoenolpyruvate carboxylase, archaeal K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Pyrde_1059 Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_1737 Homocitrate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Pyrde_1931 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Pyrde_0753 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pdl00630]
D Pyrde_0366 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_1597 Glyoxylate reductase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D Pyrde_1508 Phosphoglycolate phosphatase, archaeal type K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18]
D Pyrde_1506 Ribulose-1,5-bisphosphate carboxylase, Type III K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Pyrde_1133 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pyrde_1073 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Pyrde_1179 Glycine cleavage system protein P, N-terminal domain K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Pyrde_1178 Glycine cleavage system protein P, C-terminal domain K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Pyrde_1561 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_1470 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Pyrde_0332 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Pyrde_1511 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Pyrde_1512 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Pyrde_1513 formate dehydrogenase, cytochrome b K00127 fdoI; formate dehydrogenase subunit gamma
C 00640 Propanoate metabolism [PATH:pdl00640]
D Pyrde_0366 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pyrde_1729 Acyl-CoA synthetase (NDP forming) K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D Pyrde_0750 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_0268 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_1448 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_0267 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_1449 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_0270 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_1446 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_0269 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1447 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1237 Pyruvate carboxyl transferase subunit A K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Pyrde_1611 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pyrde_0794 Succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Pyrde_0793 Succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism [PATH:pdl00650]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_1917 Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pyrde_1920 Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pyrde_1918 putative succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Pyrde_1919 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Pyrde_1611 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pyrde_0268 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_1448 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_0267 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_1449 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_0270 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_1446 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_0269 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1447 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1713 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pyrde_1714 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pyrde_0239 putative hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D Pyrde_1930 Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pyrde_1929 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:pdl00660]
D Pyrde_1930 Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pyrde_1929 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Pyrde_0794 Succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Pyrde_0793 Succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Pyrde_1933 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Pyrde_1538 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Pyrde_1926 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Pyrde_1537 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Pyrde_1932 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pdl00562]
D Pyrde_1309 Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Pyrde_1808 Inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Pyrde_0746 sugar nucleotidyltransferase K07281 ipct; 1L-myo-inositol 1-phosphate cytidylyltransferase [EC:2.7.7.74]
D Pyrde_0747 phosphatidylglycerophosphate synthase K07291 dipps; CDP-L-myo-inositol myo-inositolphosphotransferase [EC:2.7.8.34]
D Pyrde_0049 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pdl00190]
D Pyrde_1472 NADH ubiquinone oxidoreductase chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Pyrde_1473 NADH-ubiquinone oxidoreductase chain K K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Pyrde_1474 NADH-ubiquinone oxidoreductase chain J K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Pyrde_1475 NADH-ubiquinone oxidoreductase chain D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Pyrde_1531 putative NADH-ubiquinone oxidoreductase chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Pyrde_1477 NADH-ubiquinone oxidoreductase chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Pyrde_1478 NADH-ubiquinone oxidoreductase chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Pyrde_1479 putative NADH dehydrogenase subunit 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Pyrde_1529 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Pyrde_1481 NADH-ubiquinone oxidoreductase chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Pyrde_1528 NADH-ubiquinone oxidoreductase chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Pyrde_1480 NADH-ubiquinone oxidoreductase chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Pyrde_1526 NADH-ubiquinone oxidoreductase chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Pyrde_1527 NADH-ubiquinone oxidoreductase chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Pyrde_1482 NADH-ubiquinone oxidoreductase chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Pyrde_0327 NADH dehydrogenase, FAD-containing subunit K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D Pyrde_1917 Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pyrde_1920 Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pyrde_1918 putative succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Pyrde_1919 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Pyrde_1126 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pyrde_1264 cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Pyrde_1332 V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Pyrde_1276 V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Pyrde_1331 V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Pyrde_1277 V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Pyrde_1330 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Pyrde_1278 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Pyrde_1333 V-type ATP synthase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Pyrde_1275 V-type ATP synthase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Pyrde_1334 V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Pyrde_1274 V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Pyrde_1271 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D Pyrde_1326 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D Pyrde_1335 V-type ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Pyrde_1273 V-type ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Pyrde_1604 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:pdl00710]
D Pyrde_1506 Ribulose-1,5-bisphosphate carboxylase, Type III K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Pyrde_1674 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Pyrde_1673 NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D Pyrde_0944 Transketolase, N-terminal region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pyrde_0945 Transketolase, C-terminal region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pyrde_0985 Ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Pyrde_0049 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Pyrde_0019 Phosphoenolpyruvate carboxylase, archaeal K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
C 00720 Other carbon fixation pathways [PATH:pdl00720]
D Pyrde_0268 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_1448 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_0267 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_1449 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_0270 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_1446 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_0269 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1447 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1059 Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Pyrde_0019 Phosphoenolpyruvate carboxylase, archaeal K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Pyrde_1915 L(+)-tartrate dehydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Pyrde_1916 L(+)-tartrate dehydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Pyrde_1917 Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Pyrde_1920 Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Pyrde_1918 putative succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Pyrde_1919 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Pyrde_0793 Succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Pyrde_0794 Succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Pyrde_0423 putative 3-hydroxyacyl-CoA dehydrogenase K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_1713 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Pyrde_1714 2-oxoglutarate oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Pyrde_1237 Pyruvate carboxyl transferase subunit A K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Pyrde_0366 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:pdl00680]
D Pyrde_1511 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Pyrde_1512 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Pyrde_1513 formate dehydrogenase, cytochrome b K00127 fdoI; formate dehydrogenase subunit gamma
D Pyrde_1073 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Pyrde_0332 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Pyrde_1645 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Pyrde_0019 Phosphoenolpyruvate carboxylase, archaeal K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Pyrde_0050 D-fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Pyrde_1086 3-hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D Pyrde_0680 hexulose-6-phosphate synthase K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27]
D Pyrde_1299 Coenzyme F420-reducing hydrogenase, alpha subunit K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5]
D Pyrde_1298 Coenzyme F420-reducing hydrogenase, gamma subunit K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5]
D Pyrde_0366 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pyrde_0268 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_1448 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_0267 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_1449 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_0270 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_1446 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_0269 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1447 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1059 Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Pyrde_1131 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Pyrde_1546 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Pyrde_0173 putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Pyrde_1453 Decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
C 00910 Nitrogen metabolism [PATH:pdl00910]
D Pyrde_1307 putative nitric oxide reductase, cytochrome b subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D Pyrde_0337 Hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D Pyrde_1598 NADP-specific glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D Pyrde_1133 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pyrde_1807 glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Pyrde_1827 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:pdl00920]
D Pyrde_1957 Sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Pyrde_1960 Adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D Pyrde_0808 hypothetical protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Pyrde_0891 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Pyrde_1863 putative NADH dehydrogenase, FAD-containing subunit K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Pyrde_0752 NADH dehydrogenase, FAD-containing subunit K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Pyrde_0768 Cysteine synthase K10150 cysO; cysteine synthase / O-phosphoserine sulfhydrylase / cystathionine beta-synthase [EC:2.5.1.47 2.5.1.65 4.2.1.22]
D Pyrde_0662 Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Pyrde_0021 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pdl00061]
D Pyrde_1237 Pyruvate carboxyl transferase subunit A K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Pyrde_0037 Putative dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0391 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_1323 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0497 Putative dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0208 fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0210 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0428 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:pdl00071]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_1521 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Pyrde_0208 fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0210 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0428 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
D Pyrde_0332 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
C 00564 Glycerophospholipid metabolism [PATH:pdl00564]
D Pyrde_0290 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Pyrde_1535 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Pyrde_0450 NAD(P)-dependent glycerol-1-phosphate dehydrogenase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
D Pyrde_0546 geranylgeranylglyceryl phosphate synthase-like protein K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41]
D Pyrde_0563 geranylgeranylglycerol-phosphate geranylgeranyltransferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42]
D Pyrde_0508 hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67]
D Pyrde_1316 Phosphatidylserine synthase K19665 pssA; archaetidylserine synthase [EC:2.7.8.38]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pdl00230]
D Pyrde_1456 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Pyrde_0972 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Pyrde_0280 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Pyrde_1430 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pyrde_1431 glutamine amidotransferase class-II K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pyrde_1429 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Pyrde_1428 phosphoribosylaminoimidazole carboxylase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D Pyrde_1432 Phosphoribosylformylglycinamidine synthase, synthetase subunit K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D Pyrde_1434 Phosphoribosylformylglycinamidine synthase, PurS subunit K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D Pyrde_1433 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Pyrde_1426 Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Pyrde_0799 Phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Pyrde_0789 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Pyrde_0749 IMP biosynthesis protein PurP domain containing protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23]
D Pyrde_0289 IMP biosynthesis protein PurP domain containing protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23]
D Pyrde_0970 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pyrde_0145 putative inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Pyrde_2011 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Pyrde_0104 inosine/xanthosine triphosphatase K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D Pyrde_0126 putative deoxyribonucleotide triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Pyrde_0144 Putative GMP synthase, amidotransferase subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Pyrde_1589 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Pyrde_0738 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Pyrde_0795 Adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D Pyrde_0791 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Pyrde_2037 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57]
D Pyrde_0999 Adenylate kinase, archaeal type K00939 adk; adenylate kinase [EC:2.7.4.3]
D Pyrde_0057 putative nucleotide kinase K18532 AK6; adenylate kinase [EC:2.7.4.3]
D Pyrde_1635 putative nucleotide kinase K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D Pyrde_1701 hypothetical protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D Pyrde_1960 Adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D Pyrde_1957 Sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Pyrde_1827 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:pdl00240]
D Pyrde_0371 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Pyrde_0372 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Pyrde_0659 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Pyrde_0658 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D Pyrde_0656 putative dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Pyrde_0797 Dihydroorotate dehydrogenase, catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D Pyrde_0657 Dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D Pyrde_0660 Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Pyrde_0661 Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Pyrde_1775 Uridine monophosphate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Pyrde_2011 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Pyrde_0663 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Pyrde_0996 Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Pyrde_0970 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pyrde_0966 S-methyl-5-thioadenosine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D Pyrde_0633 Uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D Pyrde_1742 Uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Pyrde_2037 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57]
D Pyrde_1558 Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Pyrde_0738 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Pyrde_1239 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Pyrde_1589 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Pyrde_0163 Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Pyrde_1593 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Pyrde_1588 thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pdl00250]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pyrde_0161 L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Pyrde_0374 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Pyrde_0373 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Pyrde_0791 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Pyrde_0789 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Pyrde_0659 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Pyrde_0658 aspartate carbamoyltransferase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D Pyrde_1611 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pyrde_1807 glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Pyrde_1598 NADP-specific glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D Pyrde_1133 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pyrde_0371 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Pyrde_0372 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Pyrde_1433 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Pyrde_1696 Glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Pyrde_1430 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pyrde_1431 glutamine amidotransferase class-II K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pdl00260]
D Pyrde_0377 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Pyrde_0376 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Pyrde_0378 putative homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Pyrde_0020 Homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Pyrde_1784 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Pyrde_1073 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Pyrde_0332 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Pyrde_1131 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal type K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Pyrde_1546 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Pyrde_0173 putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Pyrde_1179 Glycine cleavage system protein P, N-terminal domain K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Pyrde_1178 Glycine cleavage system protein P, C-terminal domain K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Pyrde_1561 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_1470 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Pyrde_0768 Cysteine synthase K10150 cysO; cysteine synthase / O-phosphoserine sulfhydrylase / cystathionine beta-synthase [EC:2.5.1.47 2.5.1.65 4.2.1.22]
D Pyrde_0939 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Pyrde_0483 pyridoxal-phosphate dependent TrpB-like protein K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Pyrde_0938 tryptophan synthase beta chain K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pdl00270]
D Pyrde_0662 Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Pyrde_0768 Cysteine synthase K10150 cysO; cysteine synthase / O-phosphoserine sulfhydrylase / cystathionine beta-synthase [EC:2.5.1.47 2.5.1.65 4.2.1.22]
D Pyrde_0097 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Pyrde_1971 putative cobalamin-independent synthase MetE domain containing protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Pyrde_0620 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Pyrde_1146 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Pyrde_0967 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Pyrde_0018 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Pyrde_0598 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Pyrde_1656 Uridine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D Pyrde_0561 5'-methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D Pyrde_1820 putative amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D Pyrde_1216 DNA-cytosine modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pyrde_1213 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Pyrde_0377 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Pyrde_0376 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Pyrde_0378 putative homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Pyrde_0020 Homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Pyrde_0021 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pyrde_1546 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Pyrde_0769 ParB-like nuclease domain K23370 serK; L-serine kinase (ADP) [EC:2.7.1.226]
C 00280 Valine, leucine and isoleucine degradation [PATH:pdl00280]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_1521 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Pyrde_2013 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0239 putative hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pdl00290]
D Pyrde_1933 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Pyrde_1538 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Pyrde_1926 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Pyrde_1537 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Pyrde_1932 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Pyrde_1930 Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pyrde_1929 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Pyrde_1928 Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Pyrde_1927 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Pyrde_1737 Homocitrate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Pyrde_1931 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Pyrde_0753 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pdl00300]
D Pyrde_0378 putative homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Pyrde_0377 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Pyrde_0376 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Pyrde_1767 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Pyrde_0675 diaminopimelate aminotransferase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Pyrde_0142 transcriptional regulator K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Pyrde_1836 putative lysine biosynthesis protein LysW K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW
D Pyrde_1837 putative lysine biosynthesis protein LysX K05827 lysX; [lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase [EC:6.3.2.43]
D Pyrde_1834 N-acetylglutamate kinase K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19]
D Pyrde_1835 N-acetyl-gamma-aminoadipyl-phosphate reductase K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106]
D Pyrde_1838 putative acetylornithine aminotransferase K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D Pyrde_1839 N-acetyl-lysine deacetylase K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132]
C 00310 Lysine degradation [PATH:pdl00310]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_1540 Lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
C 00220 Arginine biosynthesis [PATH:pdl00220]
D Pyrde_1124 Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Pyrde_0374 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Pyrde_0373 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Pyrde_1433 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Pyrde_1133 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pyrde_0371 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Pyrde_0372 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Pyrde_1827 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D Pyrde_1598 NADP-specific glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pyrde_1836 putative lysine biosynthesis protein LysW K05826 lysW; alpha-aminoadipate/glutamate carrier protein LysW
D Pyrde_0370 Lysine biosynthesis protein LysX K19412 argX; glutamate---[amino group carrier protein] ligase [EC:6.3.2.60]
D Pyrde_1834 N-acetylglutamate kinase K05828 lysZ; [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19]
D Pyrde_1835 N-acetyl-gamma-aminoadipyl-phosphate reductase K05829 lysY; [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106]
D Pyrde_1838 putative acetylornithine aminotransferase K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D Pyrde_1839 N-acetyl-lysine deacetylase K05831 lysK; [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132]
C 00330 Arginine and proline metabolism [PATH:pdl00330]
D Pyrde_0896 N-methylhydantoinase A/acetone carboxylase, beta subunit K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D Pyrde_0897 N-methylhydantoinase B/acetone carboxylase, alpha subunit K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D Pyrde_0589 Agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D Pyrde_0018 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Pyrde_0598 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Pyrde_1146 S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Pyrde_0967 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Pyrde_0147 Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:pdl00340]
D Pyrde_1383 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Pyrde_1373 phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D Pyrde_1375 Phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D Pyrde_1382 hypothetical protein K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Pyrde_1374 Imidazole glycerol phosphate synthase amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Pyrde_1371 Imidazole glycerol phosphate synthase cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Pyrde_1380 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Pyrde_1743 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pyrde_1372 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:pdl00350]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pyrde_1743 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pyrde_1453 Decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
C 00360 Phenylalanine metabolism [PATH:pdl00360]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pyrde_1743 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:pdl00380]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pdl00400]
D Pyrde_0942 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Pyrde_0941 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D Pyrde_0950 putative shikimate kinase II K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Pyrde_0949 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Pyrde_0948 putative chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Pyrde_0935 Anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pyrde_0934 Anthranilate synthase, amidotransferase component K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Pyrde_0937 Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Pyrde_0936 phosphoribosyl anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Pyrde_0933 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Pyrde_0939 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Pyrde_0483 pyridoxal-phosphate dependent TrpB-like protein K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Pyrde_0938 tryptophan synthase beta chain K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Pyrde_0946 Prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D Pyrde_1468 Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pyrde_1743 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pdl00410]
D Pyrde_1453 Decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D Pyrde_1611 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pyrde_0351 pantothenate synthetase K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
C 00430 Taurine and hypotaurine metabolism
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pdl00450]
D Pyrde_0021 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Pyrde_0097 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Pyrde_1971 putative cobalamin-independent synthase MetE domain containing protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Pyrde_0767 SufS subfamily cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D Pyrde_1957 Sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Pyrde_1175 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pdl00460]
D Pyrde_0161 L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Pyrde_1073 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pdl00470]
D Pyrde_1433 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Pyrde_0253 L-alanine-DL-glutamate epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
C 00480 Glutathione metabolism [PATH:pdl00480]
D Pyrde_1851 Cytosol aminopeptidase PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Pyrde_0018 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Pyrde_0598 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
C 00550 Peptidoglycan biosynthesis
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pdl00730]
D Pyrde_0348 hydroxymethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D Pyrde_0221 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D Pyrde_1998 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Pyrde_0220 thiazole-adenylate synthase K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D Pyrde_0347 thiazole-adenylate synthase K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D Pyrde_1308 Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Pyrde_1635 putative nucleotide kinase K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D Pyrde_0999 Adenylate kinase, archaeal type K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:pdl00740]
D Pyrde_2004 putative GTP cyclohydrolase K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29]
D Pyrde_2005 pyrimidine reductase, riboflavin biosynthesis K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302]
D Pyrde_2003 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D Pyrde_2001 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Pyrde_2002 Riboflavin synthase archaeal K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Pyrde_0601 FMN adenylyltransferase K14656 ribL; FAD synthetase [EC:2.7.7.2]
D Pyrde_1861 nitroreductase K19286 nfrA2; FMN reductase [NAD(P)H] [EC:1.5.1.39]
D Pyrde_1456 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Pyrde_0581 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:pdl00750]
D Pyrde_1784 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Pyrde_0407 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D Pyrde_0406 pyridoxal phosphate synthase yaaE subunit K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pdl00760]
D Pyrde_0813 L-Aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]
D Pyrde_0272 putative quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Pyrde_0814 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Pyrde_1184 Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Pyrde_0970 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Pyrde_1114 Nicotinamide-nucleotide adenylyltransferase, NadM family K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1]
D Pyrde_0480 nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1]
D Pyrde_1666 NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D Pyrde_1500 NAD-dependent protein deacetylase, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Pyrde_1877 ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:pdl00770]
D Pyrde_1930 Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Pyrde_1929 hypothetical protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D Pyrde_1928 Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Pyrde_1927 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Pyrde_0817 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Pyrde_0102 hypothetical protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D Pyrde_0818 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D Pyrde_0820 pantothenate kinase K06982 pok; pantoate kinase [EC:2.7.1.169]
D Pyrde_0351 pantothenate synthetase K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
D Pyrde_0823 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Pyrde_0121 hypothetical protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237]
D Pyrde_1453 Decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
C 00780 Biotin metabolism [PATH:pdl00780]
D Pyrde_0037 Putative dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0391 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_1323 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0497 Putative dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_1238 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:pdl00785]
D Pyrde_1321 hypothetical protein K09711 lipS1; lipoyl synthase
D Pyrde_1320 biotin synthase-related enzyme K24689 lipS2; lipoyl synthase
D Pyrde_0455 hypothetical protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D Pyrde_1319 lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_1179 Glycine cleavage system protein P, N-terminal domain K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Pyrde_1178 Glycine cleavage system protein P, C-terminal domain K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Pyrde_1561 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Pyrde_1470 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pdl00790]
D Pyrde_1605 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Pyrde_1466 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Pyrde_1592 hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Pyrde_1467 Organic radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Pyrde_0916 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Pyrde_0555 HD superfamily metal-dependent phosphohydrolase K17487 mptB; 7,8-dihydroneopterin 2',3'-cyclic phosphate phosphodiesterase [EC:3.1.4.56]
D Pyrde_1682 hypothetical protein K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Pyrde_1683 putative archaeal sugar kinase K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54]
D Pyrde_0679 GHMP kinase group 1 K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54]
D Pyrde_0914 beta-lactamase domain-containing protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D Pyrde_1127 Molybdenum cofactor biosynthesis protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Pyrde_1641 Molybdenum cofactor biosynthesis protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Pyrde_1390 molybdopterin converting factor, large subunit K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12]
D Pyrde_1821 molybdenum cofactor biosynthesis bifunctional protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Pyrde_0681 molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Pyrde_1510 Molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:pdl00670]
D Pyrde_1073 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Pyrde_1561 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Pyrde_1588 thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D Pyrde_0576 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pdl00860]
D Pyrde_2019 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pyrde_0763 Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Pyrde_1567 Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Pyrde_0040 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Pyrde_1566 Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Pyrde_1564 Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Pyrde_1565 Uroporphyrinogen-III methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Pyrde_0190 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Pyrde_0575 Radical SAM domain containing protein K22226 ahbC; Fe-coproporphyrin III synthase
D Pyrde_0573 Radical SAM domain containing protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D Pyrde_1126 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Pyrde_1712 hypothetical protein K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Pyrde_0281 hypothetical protein K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Pyrde_1487 putative cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Pyrde_1490 GTP:adenosylcobinamide-phosphate guanylyltransferase K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62]
D Pyrde_1488 putative cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Pyrde_1489 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D Pyrde_1416 putative magnesium chelatase K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pdl00130]
D Pyrde_1732 polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Pyrde_1731 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D Pyrde_0581 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Pyrde_0580 methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Pyrde_1749 hypothetical protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D Pyrde_1750 hypothetical protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D Pyrde_1738 hypothetical protein K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pdl00900]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0239 putative hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D Pyrde_0242 3-hydroxy-3-methylglutaryl-coenzyme A reductase K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
D Pyrde_1615 Mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D Pyrde_2023 Isopentenyl phosphate kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26]
D Pyrde_0503 putative aconitase subunit 1 K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182]
D Pyrde_0502 putative aconitase subunit 2 K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182]
D Pyrde_0504 UbiD family decarboxylase K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126]
D Pyrde_0581 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Pyrde_2022 isopentenyl pyrophosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Pyrde_2021 geranylgeranyl pyrophosphate synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Pyrde_0981 undecaprenyl diphosphate synthase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Pyrde_0944 Transketolase, N-terminal region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Pyrde_0945 Transketolase, C-terminal region K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D Pyrde_1695 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Pyrde_1774 acetyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:pdl00261]
D Pyrde_1957 Sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D Pyrde_0377 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Pyrde_0376 Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pdl00521]
D Pyrde_0972 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Pyrde_1808 Inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Pyrde_1309 Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Pyrde_1695 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Pyrde_1774 acetyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
D Pyrde_1695 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Pyrde_1774 acetyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]
C 00401 Novobiocin biosynthesis [PATH:pdl00401]
D Pyrde_0946 Prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pyrde_1743 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Pyrde_0935 Anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pyrde_0934 Anthranilate synthase, amidotransferase component K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Pyrde_0037 Putative dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0391 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_1323 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0497 Putative dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites
D Pyrde_0620 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:pdl00627]
D Pyrde_1452 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Pyrde_0581 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:pdl00633]
D Pyrde_0647 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Pyrde_0395 hyaluronate lyase K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Pyrde_0268 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_1448 Pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Pyrde_0267 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_1449 Pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Pyrde_0270 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_1446 Pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Pyrde_0269 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Pyrde_1447 Pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pdl03020]
D Pyrde_0443 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6]
D Pyrde_0442 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D Pyrde_0441 DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D Pyrde_2031 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D Pyrde_0517 DNA-directed RNA polymerase subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D Pyrde_0119 DNA-directed RNA polymerase subunit E' K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D Pyrde_0528 DNA-directed RNA polymerase subunit F K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D Pyrde_0064 DNA-directed RNA polymerase subunit G K03052 rpoG; DNA-directed RNA polymerase subunit G [EC:2.7.7.6]
D Pyrde_0444 DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D Pyrde_1651 DNA-directed RNA polymerase subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D Pyrde_2027 DNA-directed RNA polymerase subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
D Pyrde_0590 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
C 03022 Basal transcription factors [PATH:pdl03022]
D Pyrde_0100 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D Pyrde_0593 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D Pyrde_1668 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D Pyrde_1217 Transcription factor E (TFE) K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D Pyrde_0605 Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pdl03010]
D Pyrde_2026 30S ribosomal protein SAe (S2p) K02967 RP-S2; small subunit ribosomal protein S2
D Pyrde_1016 30S ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Pyrde_2033 30S ribosomal protein S9e (S4p) K02986 RP-S4; small subunit ribosomal protein S4
D Pyrde_1003 30S ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Pyrde_0436 30S ribosomal protein S5e (S7p) K02992 RP-S7; small subunit ribosomal protein S7
D Pyrde_1008 30S ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Pyrde_2028 30S ribosomal protein S16e (S9p) K02996 RP-S9; small subunit ribosomal protein S9
D Pyrde_0434 30S ribosomal protein S20e (S10p) K02946 RP-S10; small subunit ribosomal protein S10
D Pyrde_2032 30S ribosomal protein S14e (S11p) K02948 RP-S11; small subunit ribosomal protein S11
D Pyrde_0438 30S ribosomal protein S23e (S12p) K02950 RP-S12; small subunit ribosomal protein S12
D Pyrde_2034 30S ribosomal protein S18e (S13p) K02952 RP-S13; small subunit ribosomal protein S13
D Pyrde_1009 30S ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Pyrde_0127 30S ribosomal protein S13e (S15p) K02956 RP-S15; small subunit ribosomal protein S15
D Pyrde_1014 30S ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Pyrde_1028 30S ribosomal protein S19p K02965 RP-S19; small subunit ribosomal protein S19
D Pyrde_0130 30S ribosomal protein S3Ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D Pyrde_1011 30S ribosomal protein S4E K02987 RP-S4e; small subunit ribosomal protein S4e
D Pyrde_0116 30S ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e
D Pyrde_0105 30S ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e
D Pyrde_0055 30S ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e
D Pyrde_0470 30S ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e
D Pyrde_0122 30S ribosomal protein S24e K02974 RP-S24e; small subunit ribosomal protein S24e
D Pyrde_1169 30S ribosomal protein S25e K02975 RP-S25e; small subunit ribosomal protein S25e
D Pyrde_1284 30S ribosomal protein S26e K02976 RP-S26e; small subunit ribosomal protein S26e
D Pyrde_0511 30S ribosomal protein S27e K02978 RP-S27e; small subunit ribosomal protein S27e
D Pyrde_0123 30S ribosomal protein S27Ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D Pyrde_2016 30S ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e
D Pyrde_1663 30S ribosomal protein S30e K02983 RP-S30e; small subunit ribosomal protein S30e
D Pyrde_0459 50S ribosomal protein L1p K02863 RP-L1; large subunit ribosomal protein L1
D Pyrde_1029 50S ribosomal protein L2p K02886 RP-L2; large subunit ribosomal protein L2
D Pyrde_1020 50S ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Pyrde_1010 50S ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Pyrde_1007 50S ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Pyrde_0458 50S ribosomal protein L10p K02864 RP-L10; large subunit ribosomal protein L10
D Pyrde_0460 50S ribosomal protein L11p K02867 RP-L11; large subunit ribosomal protein L11
D Pyrde_0160 50S ribosomal protein L12a (P1/P2) K02869 RP-L12; large subunit ribosomal protein L12
D Pyrde_2029 50S ribosomal protein L13Ae (L13p) K02871 RP-L13; large subunit ribosomal protein L13
D Pyrde_1013 50S ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Pyrde_1001 50S ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Pyrde_1004 50S ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Pyrde_1017 50S ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Pyrde_1018 50S ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Pyrde_1012 50S ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Pyrde_1015 50S ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Pyrde_1002 50S ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Pyrde_1019 50S ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e
D Pyrde_2018 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D Pyrde_0522 50S ribosomal protein L10e K02866 RP-L10e; large subunit ribosomal protein L10e
D Pyrde_0642 50S ribosomal protein L13e K02873 RP-L13e; large subunit ribosomal protein L13e
D Pyrde_0995 50S ribosomal protein L14e K02875 RP-L14e; large subunit ribosomal protein L14e
D Pyrde_2009 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e
D Pyrde_2030 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e
D Pyrde_1005 50S ribosomal protein L19E K02885 RP-L19e; large subunit ribosomal protein L19e
D Pyrde_0529 50S ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e
D Pyrde_2015 50S ribosomal protein L24e K02896 RP-L24e; large subunit ribosomal protein L24e
D Pyrde_0440 50S ribosomal protein L30e K02908 RP-L30e; large subunit ribosomal protein L30e
D Pyrde_0467 50S ribosomal protein L31e K02910 RP-L31e; large subunit ribosomal protein L31e
D Pyrde_1006 50S ribosomal protein L32E K02912 RP-L32e; large subunit ribosomal protein L32e
D Pyrde_0997 50S ribosomal protein L34e K02915 RP-L34e; large subunit ribosomal protein L34e
D Pyrde_1612 50S ribosomal protein L35Ae K02917 RP-L35Ae; large subunit ribosomal protein L35Ae
D Pyrde_0445 50S ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e
D Pyrde_1991 50S ribosomal protein L37Ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D Pyrde_0070 50S ribosomal protein L38e K02923 RP-L38e; large subunit ribosomal protein L38e
D Pyrde_0468 50S ribosomal protein L39e K02924 RP-L39e; large subunit ribosomal protein L39e
D Pyrde_1985 50S ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D Pyrde_0512 50S ribosomal protein L44e K02929 RP-L44e; large subunit ribosomal protein L44e
D Pyrde_0465 50S ribosomal protein L18Ae K02944 RP-LX; large subunit ribosomal protein LX
D Pyrde_r0003 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Pyrde_r0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Pyrde_r0001 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Pyrde_r0004 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pdl00970]
D Pyrde_t0018 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Pyrde_t0042 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Pyrde_t0028 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Pyrde_t0014 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0043 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0034 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Pyrde_t0017 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Pyrde_t0038 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Pyrde_t0026 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Pyrde_t0015 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Pyrde_t0025 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Pyrde_t0009 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Pyrde_t0045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Pyrde_t0019 tRNA-His K14226 tRNA-His; tRNA His
D Pyrde_t0027 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Pyrde_t0020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0046 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0001 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0041 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Pyrde_t0035 tRNA-Met K14230 tRNA-Met; tRNA Met
D Pyrde_t0033 tRNA-Met K14230 tRNA-Met; tRNA Met
D Pyrde_t0044 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Pyrde_t0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pyrde_t0010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pyrde_t0029 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pyrde_t0008 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Pyrde_t0021 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Pyrde_t0003 tRNA-Val K14237 tRNA-Val; tRNA Val
D Pyrde_t0022 tRNA-Val K14237 tRNA-Val; tRNA Val
D Pyrde_t0024 tRNA-Val K14237 tRNA-Val; tRNA Val
D Pyrde_2019 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pyrde_1969 glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Pyrde_1559 Aspartyl-tRNA(Asn) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Pyrde_1189 glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Pyrde_1662 Glutamyl-tRNA(Gln) amidotransferase asparaginase subunit K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7]
D Pyrde_1661 Glutamyl-tRNA(Gln) amidotransferase transferase subunit K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7]
D Pyrde_0457 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Pyrde_0572 Aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Pyrde_0588 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Pyrde_1697 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Pyrde_1077 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Pyrde_1140 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Pyrde_1459 hypothetical protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16]
D Pyrde_1175 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Pyrde_1618 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Pyrde_1085 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Pyrde_0841 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Pyrde_0596 Lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D Pyrde_1150 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Pyrde_1281 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Pyrde_1685 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Pyrde_1625 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Pyrde_1626 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Pyrde_1627 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pyrde_1679 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pdl03060]
D Pyrde_1000 preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D Pyrde_0532 Signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Pyrde_0463 Signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D Pyrde_0462 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D Pyrde_0653 Signal recognition particle protein K03105 SRP19; signal recognition particle subunit SRP19
D Pyrde_0422 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pyrde_1769 Anion-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pyrde_1296 Sec-independent secretion pathway protein K03116 tatA; sec-independent protein translocase protein TatA
D Pyrde_1295 Sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
D Pyrde_1649 Signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D Pyrde_1207 signal peptidase I, archaeal type K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D Pyrde_0360 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pdl04122]
D Pyrde_1127 Molybdenum cofactor biosynthesis protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Pyrde_1746 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein
D Pyrde_0988 sulfor transporting protein K03636 moaD; sulfur-carrier protein
D Pyrde_0685 molybdopterin converting factor, small subunit K03636 moaD; sulfur-carrier protein
D Pyrde_1390 molybdopterin converting factor, large subunit K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12]
D Pyrde_1999 dinucleotide-utilizing enzyme K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D Pyrde_1641 Molybdenum cofactor biosynthesis protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Pyrde_1821 molybdenum cofactor biosynthesis bifunctional protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Pyrde_1998 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Pyrde_1973 hypothetical protein K03154 thiS; sulfur carrier protein
D Pyrde_0635 hypothetical protein K03154 thiS; sulfur carrier protein
C 03050 Proteasome [PATH:pdl03050]
D Pyrde_1221 proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit
D Pyrde_1996 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Pyrde_0449 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pyrde_0452 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:pdl03018]
D Pyrde_0519 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Pyrde_1994 ribosomal RNA-processing protein RRP4 K03679 RRP4; exosome complex component RRP4
D Pyrde_1992 RNase PH-related exoribonuclease K12589 RRP42; exosome complex component RRP42
D Pyrde_1993 ribosomal RNA-processing protein RRP41/SKI6 K11600 RRP41; exosome complex component RRP41
D Pyrde_1645 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pdl03030]
D Pyrde_1721 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Pyrde_1628 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Pyrde_1576 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Pyrde_1633 Archaeal DNA polymerase I K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pyrde_1053 Archaeal DNA polymerase I K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pyrde_1637 DNA replication helicase protein MCM K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D Pyrde_0514 DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D Pyrde_1167 DNA primase large subunit K18882 priL; DNA primase large subunit
D Pyrde_1039 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0558 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0515 DNA polymerase sliding clamp B2 K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_1639 Replication factor C small subunit K04801 rfcS; replication factor C small subunit
D Pyrde_1640 Replication factor C large subunit K04800 rfcL; replication factor C large subunit
D Pyrde_1874 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pyrde_0136 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03410 Base excision repair [PATH:pdl03410]
D Pyrde_1762 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Pyrde_1802 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Pyrde_1039 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0558 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0515 DNA polymerase sliding clamp B2 K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_1874 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pyrde_0136 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Pyrde_0632 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Pyrde_1778 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
C 03420 Nucleotide excision repair [PATH:pdl03420]
D Pyrde_0605 Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Pyrde_1573 ERCC4-type nuclease K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pyrde_0109 ERCC4 domain containing protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pyrde_1039 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0558 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0515 DNA polymerase sliding clamp B2 K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0136 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03430 Mismatch repair [PATH:pdl03430]
D Pyrde_1594 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D Pyrde_1721 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Pyrde_1039 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0558 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0515 DNA polymerase sliding clamp B2 K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0136 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03440 Homologous recombination
D Pyrde_1721 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
C 03450 Non-homologous end-joining
D Pyrde_1874 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
D Pyrde_0120 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4
D Pyrde_0461 50S ribosomal protein L24A K15172 SUPT5H; transcription elongation factor SPT5
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pdl02010]
D Pyrde_1923 ABC-type tungstate transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein
D Pyrde_1922 ABC-type tungstate transport system, periplasmic component K05773 tupB; tungstate transport system permease protein
D Pyrde_1921 ABC-type cobalt transport system, ATPase component K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Pyrde_1860 Molybdenum ABC transporter, periplasmic molybdenum-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Pyrde_1858 Molybdenum ABC transporter, permease protein ModB K02018 modB; molybdate transport system permease protein
D Pyrde_1857 Molybdenum ABC transporter, ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Pyrde_0609 ABC-type Fe3+ transport, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D Pyrde_0153 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D Pyrde_0608 ABC-type Fe3+ transport, permease component K02011 afuB; iron(III) transport system permease protein
D Pyrde_0154 ABC-type Fe3+ transport system, permease component K02011 afuB; iron(III) transport system permease protein
D Pyrde_0607 ABC-type spermidine/spermine transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Pyrde_0298 Thiamin ABC transporter, substrate-binding component K02064 thiB; thiamine transport system substrate-binding protein
D Pyrde_0297 putative ABC-type iron(III) transport system, permease component K02063 thiP; thiamine transport system permease protein
D Pyrde_1386 hypothetical protein K07335 bmpA; basic membrane protein A and related proteins
D Pyrde_0881 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D Pyrde_0640 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D Pyrde_0639 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Pyrde_0880 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Pyrde_0882 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Pyrde_0641 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Pyrde_1785 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17237 inoE; inositol-phosphate transport system substrate-binding protein
D Pyrde_1786 carbohydrate ABC transporter membrane protein 1, CUT1 family K17238 inoF; inositol-phosphate transport system permease protein
D Pyrde_1787 carbohydrate ABC transporter membrane protein 2, CUT1 family K17239 inoG; inositol-phosphate transport system permease protein
D Pyrde_1788 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17240 inoK; inositol-phosphate transport system ATP-binding protein
D Pyrde_0955 Phosphate transport system periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Pyrde_0954 Phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D Pyrde_0953 Phosphate transport system permease protein K02038 pstA; phosphate transport system permease protein
D Pyrde_0952 Phosphate transport system ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Pyrde_0828 putative branched-chain amino acid ABC transporter periplasmic protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_0205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_1292 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_0831 putative Branched-chain amino acid transport system permease protein K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_0207 ABC transporter substrate-binding protein permease protein K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_1289 ABC-type branched-chain amino acid transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_0832 putative Branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_0206 ABC transporter substrate-binding protein permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_1288 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_0829 putative branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0209 amino acid/amide ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_1291 Branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0830 putative branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0204 amino acid/amide ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_1290 Branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_1485 hypothetical protein K02009 cbiN; cobalt/nickel transport protein
D Pyrde_1486 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Pyrde_1484 ABC-type cobalt transport system, permease component K02008 cbiQ; cobalt/nickel transport system permease protein
D Pyrde_1483 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Pyrde_1815 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component
D Pyrde_0490 Cytochrome C assembly protein K02195 ccmC; heme exporter protein C
D Pyrde_0493 ABC-type transport system involved in cytochrome c biogenesis, permease component K02194 ccmB; heme exporter protein B
C 02060 Phosphotransferase system (PTS) [PATH:pdl02060]
D Pyrde_0274 hypothetical protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:pdl03070]
D Pyrde_1000 preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D Pyrde_0463 Signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D Pyrde_0532 Signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Pyrde_1296 Sec-independent secretion pathway protein K03116 tatA; sec-independent protein translocase protein TatA
D Pyrde_1295 Sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pdl02020]
D Pyrde_0955 Phosphate transport system periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Pyrde_0051 hypothetical protein K18987 irr; two-component system, OmpR family, response regulator Irr
D Pyrde_0959 hypothetical protein K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D Pyrde_1925 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Pyrde_0990 nitrogen regulatory protein P-II family K04751 glnB; nitrogen regulatory protein P-II 1
D Pyrde_1437 putative Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D Pyrde_1133 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0395 hyaluronate lyase K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Pyrde_0647 Ni,Fe-hydrogenase I large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Pyrde_1203 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Pyrde_1264 cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pdl02024]
D Pyrde_0935 Anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Pyrde_0934 Anthranilate synthase, amidotransferase component K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Pyrde_0828 putative branched-chain amino acid ABC transporter periplasmic protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_0205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_1292 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_0831 putative Branched-chain amino acid transport system permease protein K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_0207 ABC transporter substrate-binding protein permease protein K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_1289 ABC-type branched-chain amino acid transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_0832 putative Branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_0206 ABC transporter substrate-binding protein permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_1288 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_0829 putative branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0209 amino acid/amide ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_1291 Branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0830 putative branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0204 amino acid/amide ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_1290 Branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0208 fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0210 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0428 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_1203 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Pyrde_0361 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pyrde_1554 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pyrde_0218 oligopeptide/dipeptide ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pyrde_1553 putative oligopeptide/dipeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pyrde_0217 oligopeptide/dipeptide ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pyrde_1552 putative oligopeptide/dipeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pyrde_0216 oligopeptide/dipeptide ABC transporter ATPase component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Pyrde_0356 oligopeptide transport ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Pyrde_1551 oligopeptide transport ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Pyrde_1000 preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D Pyrde_0463 Signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D Pyrde_0532 Signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Pyrde_1645 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D Pyrde_1712 hypothetical protein K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Pyrde_0281 hypothetical protein K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
C 01502 Vancomycin resistance
C 01503 Cationic antimicrobial peptide (CAMP) resistance
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pdl01000]
C 01001 Protein kinases [BR:pdl01001]
D Pyrde_0125 serine/threonine kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D Pyrde_1261 Serine/threonine-protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Pyrde_0614 RIO-like serine/threonine kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C 01009 Protein phosphatases and associated proteins [BR:pdl01009]
D Pyrde_0979 translation initiation factor IF-2 subunit beta K03238 EIF2S2; translation initiation factor 2 subunit 2
D Pyrde_1213 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Pyrde_0173 putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:pdl01002]
D Pyrde_1700 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D Pyrde_0397 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Pyrde_0803 Hydrogenase 3 maturation peptidase K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D Pyrde_1368 Pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D Pyrde_0144 Putative GMP synthase, amidotransferase subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Pyrde_1430 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pyrde_1431 glutamine amidotransferase class-II K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Pyrde_1696 Glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Pyrde_1790 intracellular proteinase K26818 pfpI; archaeal arginyl aminopeptidase [EC:3.4.11.27]
D Pyrde_1793 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D Pyrde_1851 Cytosol aminopeptidase PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Pyrde_1767 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Pyrde_0675 diaminopimelate aminotransferase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Pyrde_1621 Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Pyrde_1424 Thermostable carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D Pyrde_1293 putative protease K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Pyrde_1967 hypothetical protein K06974 amzA; archaemetzincin [EC:3.4.-.-]
D Pyrde_0411 D-aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D Pyrde_0048 Subtilase family K01342 aprE; subtilisin [EC:3.4.21.62]
D Pyrde_1649 Signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D Pyrde_1207 signal peptidase I, archaeal type K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D Pyrde_0360 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D Pyrde_0148 hypothetical protein K07059 K07059; rhomboid family protein
D Pyrde_1996 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Pyrde_0449 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pyrde_0452 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pyrde_0161 L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Pyrde_0150 Zn-dependent protease TldD K03592 pmbA; PmbA protein
D Pyrde_0149 Zn-dependent protease TldD K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:pdl01003]
D Pyrde_1936 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15]
D Pyrde_1121 hypothetical protein K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18]
D Pyrde_0235 glycosyltransferase family protein K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Pyrde_0369 mannosyl-3-phosphoglycerate synthase K05947 E2.4.1.217; mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pdl01005]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pdl01011]
C 01004 Lipid biosynthesis proteins [BR:pdl01004]
D Pyrde_0037 Putative dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0391 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_1323 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0497 Putative dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Pyrde_0366 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Pyrde_1729 Acyl-CoA synthetase (NDP forming) K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13]
D Pyrde_0750 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13]
D Pyrde_0208 fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0210 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0428 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pdl01006]
D Pyrde_2021 geranylgeranyl pyrophosphate synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Pyrde_1732 polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Pyrde_1126 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:pdl01007]
D Pyrde_0596 Lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D Pyrde_2019 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pyrde_1627 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pyrde_1679 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Pyrde_1140 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Pyrde_1150 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Pyrde_1175 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Pyrde_0841 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Pyrde_1618 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Pyrde_1085 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Pyrde_0572 Aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Pyrde_1685 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Pyrde_0588 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Pyrde_1077 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Pyrde_1281 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Pyrde_1697 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Pyrde_0457 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Pyrde_1625 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Pyrde_1626 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Pyrde_1459 hypothetical protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16]
D Pyrde_0918 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Pyrde_1743 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Pyrde_1838 putative acetylornithine aminotransferase K05830 lysJ; [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124]
D Pyrde_1611 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D Pyrde_1567 Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pdl03000]
D Pyrde_1216 DNA-cytosine modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pyrde_1668 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D Pyrde_0664 transcriptional regulator, AsnC family K06154 lysM; Lrp/AsnC family transcriptional regulator, involved in the regulation of lysine biosynthesis
D Pyrde_0666 Transcriptional regulator, FUR family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D Pyrde_1203 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Pyrde_0674 transcriptional regulator K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator
D Pyrde_1794 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D Pyrde_1238 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Pyrde_1752 Transcriptional regulator, TrmB family K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D Pyrde_1859 DNA-binding protein K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator
D Pyrde_0309 CRISPR-associated protein, Csa3 family K07725 csa3; CRISPR-associated protein Csa3
D Pyrde_0571 Putative HTH-type transcriptional regulatory protein K07728 K07728; putative transcriptional regulator
D Pyrde_0060 putative transcriptional regulator K07731 K07731; putative transcriptional regulator
D Pyrde_0025 putative transcriptional regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D Pyrde_0928 Nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D Pyrde_0649 Nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D Pyrde_1586 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C 03021 Transcription machinery [BR:pdl03021]
D Pyrde_0100 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D Pyrde_0593 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D Pyrde_1668 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D Pyrde_1217 Transcription factor E (TFE) K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D Pyrde_0605 Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Pyrde_0120 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4
D Pyrde_0461 50S ribosomal protein L24A K15172 SUPT5H; transcription elongation factor SPT5
D Pyrde_1934 hypothetical protein K24104 GPN; GPN-loop GTPase
D Pyrde_0672 hypothetical protein K24104 GPN; GPN-loop GTPase
D Pyrde_0439 NusA family KH domain protein, archaeal K02600 nusA; transcription termination/antitermination protein NusA
D Pyrde_0442 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D Pyrde_0441 DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D Pyrde_0443 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6]
D Pyrde_2031 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D Pyrde_0119 DNA-directed RNA polymerase subunit E' K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D Pyrde_0528 DNA-directed RNA polymerase subunit F K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D Pyrde_0064 DNA-directed RNA polymerase subunit G K03052 rpoG; DNA-directed RNA polymerase subunit G [EC:2.7.7.6]
D Pyrde_0444 DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D Pyrde_1651 DNA-directed RNA polymerase subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D Pyrde_0517 DNA-directed RNA polymerase subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D Pyrde_2027 DNA-directed RNA polymerase subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
D Pyrde_0590 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
D Pyrde_2036 putative DNA-directed RNA polymerase subunit M K03057 tfs; transcription factor S
D Pyrde_0516 DNA-directed RNA polymerase subunit M K03057 tfs; transcription factor S
C 03019 Messenger RNA biogenesis [BR:pdl03019]
D Pyrde_0120 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4
D Pyrde_0461 50S ribosomal protein L24A K15172 SUPT5H; transcription elongation factor SPT5
D Pyrde_1267 putative cell division protein K13525 VCP; transitional endoplasmic reticulum ATPase
D Pyrde_1872 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pyrde_1631 putative RNA-binding protein K06965 PELO; protein pelota
D Pyrde_1105 peptide chain release factor K03265 ETF1; peptide chain release factor subunit 1
D Pyrde_0435 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pyrde_0519 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Pyrde_1994 ribosomal RNA-processing protein RRP4 K03679 RRP4; exosome complex component RRP4
D Pyrde_1993 ribosomal RNA-processing protein RRP41/SKI6 K11600 RRP41; exosome complex component RRP41
D Pyrde_1992 RNase PH-related exoribonuclease K12589 RRP42; exosome complex component RRP42
D Pyrde_1645 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 03041 Spliceosome [BR:pdl03041]
D Pyrde_1067 hypothetical protein K06874 ZPR1; zinc finger protein ZPR1
C 03011 Ribosome [BR:pdl03011]
D Pyrde_0130 30S ribosomal protein S3Ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D Pyrde_1011 30S ribosomal protein S4E K02987 RP-S4e; small subunit ribosomal protein S4e
D Pyrde_0116 30S ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e
D Pyrde_0105 30S ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e
D Pyrde_0055 30S ribosomal protein S17e K02962 RP-S17e; small subunit ribosomal protein S17e
D Pyrde_0470 30S ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e
D Pyrde_0122 30S ribosomal protein S24e K02974 RP-S24e; small subunit ribosomal protein S24e
D Pyrde_1169 30S ribosomal protein S25e K02975 RP-S25e; small subunit ribosomal protein S25e
D Pyrde_1284 30S ribosomal protein S26e K02976 RP-S26e; small subunit ribosomal protein S26e
D Pyrde_0511 30S ribosomal protein S27e K02978 RP-S27e; small subunit ribosomal protein S27e
D Pyrde_0123 30S ribosomal protein S27Ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D Pyrde_2016 30S ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e
D Pyrde_1663 30S ribosomal protein S30e K02983 RP-S30e; small subunit ribosomal protein S30e
D Pyrde_1019 50S ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e
D Pyrde_2018 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D Pyrde_0522 50S ribosomal protein L10e K02866 RP-L10e; large subunit ribosomal protein L10e
D Pyrde_0642 50S ribosomal protein L13e K02873 RP-L13e; large subunit ribosomal protein L13e
D Pyrde_0995 50S ribosomal protein L14e K02875 RP-L14e; large subunit ribosomal protein L14e
D Pyrde_2009 50S ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e
D Pyrde_2030 50S ribosomal protein L18e K02883 RP-L18e; large subunit ribosomal protein L18e
D Pyrde_1005 50S ribosomal protein L19E K02885 RP-L19e; large subunit ribosomal protein L19e
D Pyrde_0529 50S ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e
D Pyrde_2015 50S ribosomal protein L24e K02896 RP-L24e; large subunit ribosomal protein L24e
D Pyrde_0440 50S ribosomal protein L30e K02908 RP-L30e; large subunit ribosomal protein L30e
D Pyrde_0467 50S ribosomal protein L31e K02910 RP-L31e; large subunit ribosomal protein L31e
D Pyrde_1006 50S ribosomal protein L32E K02912 RP-L32e; large subunit ribosomal protein L32e
D Pyrde_0997 50S ribosomal protein L34e K02915 RP-L34e; large subunit ribosomal protein L34e
D Pyrde_1612 50S ribosomal protein L35Ae K02917 RP-L35Ae; large subunit ribosomal protein L35Ae
D Pyrde_0445 50S ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e
D Pyrde_1991 50S ribosomal protein L37Ae K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D Pyrde_0070 50S ribosomal protein L38e K02923 RP-L38e; large subunit ribosomal protein L38e
D Pyrde_0468 50S ribosomal protein L39e K02924 RP-L39e; large subunit ribosomal protein L39e
D Pyrde_1985 50S ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D Pyrde_0512 50S ribosomal protein L44e K02929 RP-L44e; large subunit ribosomal protein L44e
D Pyrde_2026 30S ribosomal protein SAe (S2p) K02967 RP-S2; small subunit ribosomal protein S2
D Pyrde_1016 30S ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Pyrde_2033 30S ribosomal protein S9e (S4p) K02986 RP-S4; small subunit ribosomal protein S4
D Pyrde_1003 30S ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Pyrde_0436 30S ribosomal protein S5e (S7p) K02992 RP-S7; small subunit ribosomal protein S7
D Pyrde_1008 30S ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Pyrde_2028 30S ribosomal protein S16e (S9p) K02996 RP-S9; small subunit ribosomal protein S9
D Pyrde_0434 30S ribosomal protein S20e (S10p) K02946 RP-S10; small subunit ribosomal protein S10
D Pyrde_2032 30S ribosomal protein S14e (S11p) K02948 RP-S11; small subunit ribosomal protein S11
D Pyrde_0438 30S ribosomal protein S23e (S12p) K02950 RP-S12; small subunit ribosomal protein S12
D Pyrde_2034 30S ribosomal protein S18e (S13p) K02952 RP-S13; small subunit ribosomal protein S13
D Pyrde_1009 30S ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Pyrde_0127 30S ribosomal protein S13e (S15p) K02956 RP-S15; small subunit ribosomal protein S15
D Pyrde_1014 30S ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Pyrde_1028 30S ribosomal protein S19p K02965 RP-S19; small subunit ribosomal protein S19
D Pyrde_0459 50S ribosomal protein L1p K02863 RP-L1; large subunit ribosomal protein L1
D Pyrde_1029 50S ribosomal protein L2p K02886 RP-L2; large subunit ribosomal protein L2
D Pyrde_1020 50S ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Pyrde_1010 50S ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Pyrde_1007 50S ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Pyrde_0458 50S ribosomal protein L10p K02864 RP-L10; large subunit ribosomal protein L10
D Pyrde_0460 50S ribosomal protein L11p K02867 RP-L11; large subunit ribosomal protein L11
D Pyrde_2029 50S ribosomal protein L13Ae (L13p) K02871 RP-L13; large subunit ribosomal protein L13
D Pyrde_1013 50S ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Pyrde_1001 50S ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Pyrde_1004 50S ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Pyrde_1017 50S ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Pyrde_1018 50S ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Pyrde_1012 50S ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Pyrde_1015 50S ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Pyrde_1002 50S ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Pyrde_0160 50S ribosomal protein L12a (P1/P2) K02869 RP-L12; large subunit ribosomal protein L12
D Pyrde_0465 50S ribosomal protein L18Ae K02944 RP-LX; large subunit ribosomal protein LX
D Pyrde_r0001 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Pyrde_r0004 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Pyrde_r0003 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Pyrde_r0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pdl03009]
D Pyrde_0568 rRNA biogenesis protein Nop56/Nop58 K14564 NOP56; nucleolar protein 56
D Pyrde_0509 Ribosome biogenesis protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D Pyrde_1990 hypothetical protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D Pyrde_0473 ribosome biogenesis protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D Pyrde_1262 putative RNA-processing protein K06961 KRR1; ribosomal RNA assembly protein
D Pyrde_1261 Serine/threonine-protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Pyrde_0614 RIO-like serine/threonine kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
D Pyrde_0057 putative nucleotide kinase K18532 AK6; adenylate kinase [EC:2.7.4.3]
D Pyrde_0551 hypothetical protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D Pyrde_0052 putative ATPase K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
D Pyrde_0482 GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein
D Pyrde_2006 RNase P/RNase MRP subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D Pyrde_2007 RNase P/RNase MRP subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D Pyrde_0682 hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
D Pyrde_0505 hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
D Pyrde_0466 translation initiation factor IF-6 K03264 EIF6; translation initiation factor 6
D Pyrde_0957 hypothetical protein K07562 NMD3; 60S ribosomal export protein NMD3
D Pyrde_1090 hypothetical protein K07562 NMD3; 60S ribosomal export protein NMD3
D Pyrde_1995 putative RNA-associated protein K14574 SDO1; ribosome maturation protein SDO1
D Pyrde_1267 putative cell division protein K13525 VCP; transitional endoplasmic reticulum ATPase
D Pyrde_1872 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pyrde_0478 hypothetical protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D Pyrde_0569 rRNA 2'-O-methyltransferase fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein
D Pyrde_2018 50S ribosomal protein L7Ae K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D Pyrde_0439 NusA family KH domain protein, archaeal K02600 nusA; transcription termination/antitermination protein NusA
D Pyrde_0526 ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Pyrde_0103 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Pyrde_0165 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Pyrde_0188 tRNA/RNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Pyrde_0043 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Pyrde_1575 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Pyrde_0993 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Pyrde_1981 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Pyrde_1632 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Pyrde_1715 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Pyrde_0559 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D Pyrde_1219 GTP-binding protein K03665 hflX; GTPase
D Pyrde_0878 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Pyrde_0471 hypothetical protein K07574 yhbY; RNA-binding protein
D Pyrde_2010 translation-associated GTPase K06942 ychF; ribosome-binding ATPase
D Pyrde_0498 hypothetical protein K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-]
C 03016 Transfer RNA biogenesis [BR:pdl03016]
D Pyrde_2006 RNase P/RNase MRP subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D Pyrde_2007 RNase P/RNase MRP subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D Pyrde_0472 hypothetical protein K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
D Pyrde_0250 Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Pyrde_0179 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D Pyrde_0180 hypothetical protein K24956 ZBTB8OS; protein archease
D Pyrde_0435 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pyrde_2019 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pyrde_1281 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Pyrde_0841 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Pyrde_1085 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Pyrde_1175 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Pyrde_1150 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Pyrde_0457 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Pyrde_0588 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Pyrde_1697 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Pyrde_1077 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Pyrde_1140 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Pyrde_1618 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Pyrde_1685 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Pyrde_1625 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Pyrde_1626 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Pyrde_1627 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pyrde_1679 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Pyrde_1279 hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Pyrde_1111 metal-dependent hydrolase K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
D Pyrde_1503 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Pyrde_0986 MiaB-like tRNA modifying enzyme, archaeal-type K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
D Pyrde_0098 N(2),N(2)-dimethylguanosine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D Pyrde_1876 methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Pyrde_0629 methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Pyrde_1783 tRNA-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D Pyrde_1181 tRNA-modifying enzyme K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D Pyrde_0564 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D Pyrde_1225 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D Pyrde_0994 putative pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Pyrde_1868 putative tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D Pyrde_0530 putative pseudouridylate synthase K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
D Pyrde_0125 serine/threonine kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D Pyrde_0124 putative DNA-binding/iron metalloprotein/AP endonuclease K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D Pyrde_0878 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Pyrde_0131 RNA-binding protein K06963 TAN1; tRNA acetyltransferase TAN1
D Pyrde_1138 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
D Pyrde_0379 hypothetical protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5]
D Pyrde_0554 tRNA CCA-pyrophosphorylase K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
D Pyrde_1686 tRNA splicing endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
D Pyrde_0583 tRNA-intron endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
D Pyrde_0176 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Pyrde_0038 RNA:NAD 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D Pyrde_0596 Lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D Pyrde_1459 hypothetical protein K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16]
D Pyrde_0572 Aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Pyrde_0524 rRNA methylase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D Pyrde_1606 putative rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Pyrde_0531 hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D Pyrde_1283 hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D Pyrde_0479 tRNA/RNA cytosine-C5-methylase K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D Pyrde_0625 hypothetical protein K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221]
D Pyrde_0523 rRNA (guanine-N(2)-)-methyltransferase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256]
D Pyrde_0349 DNA modification methylase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D Pyrde_1218 hypothetical protein K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
D Pyrde_0636 PP-loop domain-containing protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D Pyrde_0916 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Pyrde_1466 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Pyrde_1592 hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Pyrde_1467 Organic radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Pyrde_0066 archaeosine tRNA-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D Pyrde_1365 tRNA-guanine family transglycosylase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D Pyrde_1998 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Pyrde_0549 nucleic acid binding domain protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D Pyrde_1964 putative P-loop ATPase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D Pyrde_1684 putative P-loop ATPase fused to an acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D Pyrde_1233 putative P-loop ATPase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
C 03012 Translation factors [BR:pdl03012]
D Pyrde_1259 Translation initiation factor 1A K03236 EIF1A; translation initiation factor 1A
D Pyrde_0591 translation initiation factor Sui1 K03113 EIF1; translation initiation factor 1
D Pyrde_0510 translation initiation factor IF-2 subunit alpha K03237 EIF2S1; translation initiation factor 2 subunit 1
D Pyrde_0979 translation initiation factor IF-2 subunit beta K03238 EIF2S2; translation initiation factor 2 subunit 2
D Pyrde_0117 translation initiation factor IF-2 subunit gamma K03242 EIF2S3; translation initiation factor 2 subunit 3
D Pyrde_0534 translation initiation factor IF-5A K03263 EIF5A; translation initiation factor 5A
D Pyrde_0115 Translation initiation factor 2 K03243 EIF5B; translation initiation factor 5B
D Pyrde_0466 translation initiation factor IF-6 K03264 EIF6; translation initiation factor 6
D Pyrde_0435 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pyrde_1871 translation elongation factor 1B (aEF-1B) K03232 EEF1B; elongation factor 1-beta
D Pyrde_1572 translation elongation factor 2 (EF-2/EF-G) K03234 EEF2; elongation factor 2
D Pyrde_0521 hypothetical protein K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108]
D Pyrde_0963 hypothetical protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14]
D Pyrde_1105 peptide chain release factor K03265 ETF1; peptide chain release factor subunit 1
D Pyrde_0525 Methyltransferase small domain K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Pyrde_1869 Peptidyl-tRNA hydrolase, archaeal type K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]
C 03110 Chaperones and folding catalysts [BR:pdl03110]
D Pyrde_0056 thermosome beta subunit K22447 cct; archaeal chaperonin
D Pyrde_1652 thermosome alpha subunit K22447 cct; archaeal chaperonin
D Pyrde_1068 Small heat shock protein K13993 HSP20; HSP20 family protein
D Pyrde_0975 Molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein
D Pyrde_0464 hypothetical protein K04797 pfdA; prefoldin alpha subunit
D Pyrde_1989 prefoldin beta subunit K04798 pfdB; prefoldin beta subunit
D Pyrde_1763 [NiFe] hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Pyrde_0800 [NiFe] hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Pyrde_0048 Subtilase family K01342 aprE; subtilisin [EC:3.4.21.62]
D Pyrde_0477 putative FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Pyrde_0989 Thioredoxin K03671 TXN; thioredoxin
D Pyrde_1653 hypothetical protein K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:pdl04131]
D Pyrde_2011 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Pyrde_1267 putative cell division protein K13525 VCP; transitional endoplasmic reticulum ATPase
D Pyrde_1872 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pyrde_0422 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pyrde_1769 Anion-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pyrde_0462 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D Pyrde_1716 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Pyrde_0435 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
C 04121 Ubiquitin system [BR:pdl04121]
D Pyrde_1985 50S ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D Pyrde_0123 30S ribosomal protein S27Ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D Pyrde_1663 30S ribosomal protein S30e K02983 RP-S30e; small subunit ribosomal protein S30e
C 03051 Proteasome [BR:pdl03051]
D Pyrde_1996 Proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D Pyrde_0449 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pyrde_0452 Proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D Pyrde_1221 proteasome-activating nucleotidase K03420 psmR; proteasome regulatory subunit
C 03032 DNA replication proteins [BR:pdl03032]
D Pyrde_1039 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0558 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0515 DNA polymerase sliding clamp B2 K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_1874 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pyrde_0136 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Pyrde_1216 DNA-cytosine modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pyrde_0509 Ribosome biogenesis protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D Pyrde_1573 ERCC4-type nuclease K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pyrde_0109 ERCC4 domain containing protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pyrde_1628 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Pyrde_1866 cell division control protein Cdc6 K10725 cdc6A; archaeal cell division control protein 6
D Pyrde_1643 ORC complex protein Cdc6/Orc1 K10725 cdc6A; archaeal cell division control protein 6
D Pyrde_1637 DNA replication helicase protein MCM K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D Pyrde_0514 DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D Pyrde_1167 DNA primase large subunit K18882 priL; DNA primase large subunit
D Pyrde_1638 GINS complex protein K09723 ginS; DNA replication factor GINS
D Pyrde_1721 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Pyrde_1576 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Pyrde_1633 Archaeal DNA polymerase I K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pyrde_1053 Archaeal DNA polymerase I K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D Pyrde_1640 Replication factor C large subunit K04800 rfcL; replication factor C large subunit
D Pyrde_1639 Replication factor C small subunit K04801 rfcS; replication factor C small subunit
D Pyrde_1692 DNA topoisomerase VI subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2]
D Pyrde_1691 DNA topoisomerase VI subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2]
D Pyrde_1650 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Pyrde_0838 DNA reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-]
D Pyrde_1665 DNA reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-]
C 03036 Chromosome and associated proteins [BR:pdl03036]
D Pyrde_1216 DNA-cytosine modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pyrde_1021 hypothetical protein K09142 SPOUT1; methyltransferase [EC:2.1.1.-]
D Pyrde_0364 Site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D Pyrde_1043 nucleotide binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Pyrde_0801 ATPase involved in chromosome partitioning, ParA/MinD family K03593 mrp; ATP-binding protein involved in chromosome partitioning
C 03400 DNA repair and recombination proteins [BR:pdl03400]
D Pyrde_1182 6-O-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Pyrde_1762 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Pyrde_1802 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Pyrde_1039 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0558 DNA polymerase sliding clamp subunit K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_0515 DNA polymerase sliding clamp B2 K04802 PCNA; proliferating cell nuclear antigen
D Pyrde_1874 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pyrde_0136 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Pyrde_0605 Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Pyrde_1573 ERCC4-type nuclease K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pyrde_0109 ERCC4 domain containing protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D Pyrde_1613 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Pyrde_0842 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Pyrde_1593 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Pyrde_0632 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Pyrde_1778 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Pyrde_0451 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D Pyrde_1594 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D Pyrde_1721 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Pyrde_1135 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50
D Pyrde_1136 putative DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D Pyrde_0315 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Pyrde_1348 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D Pyrde_1698 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
D Pyrde_0507 RecA/RadA recombinase K04484 radB; DNA repair protein RadB
D Pyrde_1048 hypothetical protein K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
D Pyrde_1137 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Pyrde_0157 putative DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
D Pyrde_1650 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Pyrde_1034 ATP dependent helicase, Lhr family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Pyrde_1675 ATP dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Pyrde_1706 ATP dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Pyrde_1589 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Pyrde_1106 hypothetical protein K22585 nreA; DNA repair protein NreA
C 03029 Mitochondrial biogenesis [BR:pdl03029]
D Pyrde_2006 RNase P/RNase MRP subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D Pyrde_2007 RNase P/RNase MRP subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D Pyrde_1627 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Pyrde_1085 Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Pyrde_0588 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Pyrde_1150 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Pyrde_1969 glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Pyrde_1559 Aspartyl-tRNA(Asn) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Pyrde_1189 glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Pyrde_1043 nucleotide binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Pyrde_0801 ATPase involved in chromosome partitioning, ParA/MinD family K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Pyrde_1126 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pdl02000]
D Pyrde_1860 Molybdenum ABC transporter, periplasmic molybdenum-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Pyrde_1858 Molybdenum ABC transporter, permease protein ModB K02018 modB; molybdate transport system permease protein
D Pyrde_1857 Molybdenum ABC transporter, ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Pyrde_1923 ABC-type tungstate transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein
D Pyrde_1922 ABC-type tungstate transport system, periplasmic component K05773 tupB; tungstate transport system permease protein
D Pyrde_1921 ABC-type cobalt transport system, ATPase component K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Pyrde_0609 ABC-type Fe3+ transport, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D Pyrde_0153 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D Pyrde_0608 ABC-type Fe3+ transport, permease component K02011 afuB; iron(III) transport system permease protein
D Pyrde_0154 ABC-type Fe3+ transport system, permease component K02011 afuB; iron(III) transport system permease protein
D Pyrde_0607 ABC-type spermidine/spermine transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Pyrde_0298 Thiamin ABC transporter, substrate-binding component K02064 thiB; thiamine transport system substrate-binding protein
D Pyrde_0297 putative ABC-type iron(III) transport system, permease component K02063 thiP; thiamine transport system permease protein
D Pyrde_0355 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Pyrde_0354 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Pyrde_0353 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Pyrde_1785 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17237 inoE; inositol-phosphate transport system substrate-binding protein
D Pyrde_1786 carbohydrate ABC transporter membrane protein 1, CUT1 family K17238 inoF; inositol-phosphate transport system permease protein
D Pyrde_1787 carbohydrate ABC transporter membrane protein 2, CUT1 family K17239 inoG; inositol-phosphate transport system permease protein
D Pyrde_1788 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17240 inoK; inositol-phosphate transport system ATP-binding protein
D Pyrde_1386 hypothetical protein K07335 bmpA; basic membrane protein A and related proteins
D Pyrde_0881 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D Pyrde_0640 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D Pyrde_0639 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Pyrde_0880 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Pyrde_0882 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Pyrde_0641 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Pyrde_0955 Phosphate transport system periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Pyrde_0954 Phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D Pyrde_0953 Phosphate transport system permease protein K02038 pstA; phosphate transport system permease protein
D Pyrde_0952 Phosphate transport system ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Pyrde_0828 putative branched-chain amino acid ABC transporter periplasmic protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_0205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_1292 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Pyrde_0831 putative Branched-chain amino acid transport system permease protein K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_0207 ABC transporter substrate-binding protein permease protein K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_1289 ABC-type branched-chain amino acid transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Pyrde_0832 putative Branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_0206 ABC transporter substrate-binding protein permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_1288 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Pyrde_0829 putative branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0209 amino acid/amide ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_1291 Branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0830 putative branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0204 amino acid/amide ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_1290 Branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Pyrde_0361 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pyrde_1554 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Pyrde_0218 oligopeptide/dipeptide ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pyrde_1553 putative oligopeptide/dipeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Pyrde_0217 oligopeptide/dipeptide ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pyrde_1552 putative oligopeptide/dipeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Pyrde_0216 oligopeptide/dipeptide ABC transporter ATPase component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Pyrde_0356 oligopeptide transport ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Pyrde_1551 oligopeptide transport ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Pyrde_1460 ABC-type Fe3+-hydroxamate transport system, periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Pyrde_1461 ABC-type Fe3+-siderophore transport system, permease component K02015 ABC.FEV.P; iron complex transport system permease protein
D Pyrde_1462 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D Pyrde_1485 hypothetical protein K02009 cbiN; cobalt/nickel transport protein
D Pyrde_1484 ABC-type cobalt transport system, permease component K02008 cbiQ; cobalt/nickel transport system permease protein
D Pyrde_1486 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Pyrde_1483 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Pyrde_1815 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component
D Pyrde_1421 hypothetical protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Pyrde_0027 putative ABC-type metal ion transport system, periplasmic component K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D Pyrde_0026 putative ABC-type metal ion transport system, permease component K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D Pyrde_0028 putative ABC-type metal ion transport system,ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D Pyrde_0490 Cytochrome C assembly protein K02195 ccmC; heme exporter protein C
D Pyrde_0493 ABC-type transport system involved in cytochrome c biogenesis, permease component K02194 ccmB; heme exporter protein B
D Pyrde_0222 putative daunorubicin resistance ABC transporter inner membrane subunit B K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pyrde_0815 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pyrde_1818 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pyrde_1450 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pyrde_1582 ABC-type Na+ efflux pump, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D Pyrde_0223 putative daunorubicin resistance ABC transporter ATPase subunit K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pyrde_0816 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pyrde_1819 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pyrde_1451 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pyrde_1581 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pyrde_0544 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Pyrde_0652 putative ABC transporter K02004 ABC.CD.P; putative ABC transport system permease protein
D Pyrde_0650 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Pyrde_1755 putative ABC transporter related protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Pyrde_1831 iron ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Pyrde_0247 MatE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D Pyrde_0171 sodium-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D Pyrde_0634 Arabinose efflux permease K08153 blt; MFS transporter, DHA1 family, multidrug resistance protein
D Pyrde_0274 hypothetical protein K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Pyrde_1730 hypothetical protein K10716 kch; voltage-gated potassium channel
D Pyrde_0152 K+ transport systems, NAD-binding component K10716 kch; voltage-gated potassium channel
D Pyrde_0992 Ammonium transporter K03320 amt; ammonium transporter, Amt family
D Pyrde_1436 Ammonium transporter K03320 amt; ammonium transporter, Amt family
D Pyrde_0330 hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D Pyrde_1777 divalent cation transporter K06213 mgtE; magnesium transporter
D Pyrde_1549 hypothetical protein K06199 crcB; fluoride exporter
D Pyrde_0824 cobalt-zinc-cadmium resistance protein K13283 fieF; ferrous-iron efflux pump FieF
D Pyrde_1399 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D Pyrde_2014 hypothetical protein K03298 TC.DME; drug/metabolite transporter, DME family
D Pyrde_1501 hypothetical protein K03298 TC.DME; drug/metabolite transporter, DME family
D Pyrde_0413 hypothetical protein K07301 yrbG; cation:H+ antiporter
D Pyrde_1719 putative sodium:solute symporter K14393 actP; cation/acetate symporter
D Pyrde_0184 Trk-type K+ transport system, membrane component K03498 trkH; trk/ktr system potassium uptake protein
D Pyrde_0344 Trk-type K+ transport system, membrane component K03498 trkH; trk/ktr system potassium uptake protein
D Pyrde_1646 K+ transport system protein K03499 trkA; trk/ktr system potassium uptake protein
D Pyrde_1578 hypothetical protein K03281 clcA; chloride channel protein, CIC family
D Pyrde_0422 arsenite efflux ATP-binding protein ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pyrde_1769 Anion-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Pyrde_0637 hypothetical protein K24180 mleP; malate permease and related proteins
D Pyrde_1058 putative transporter protein K05595 marC; multiple antibiotic resistance protein
D Pyrde_1314 hypothetical protein K05595 marC; multiple antibiotic resistance protein
D Pyrde_0389 hypothetical protein K06196 ccdA; cytochrome c-type biogenesis protein
D Pyrde_0164 FeoA domain-containing protein K04758 feoA; ferrous iron transport protein A
D Pyrde_1884 Ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D Pyrde_1030 hypothetical protein K25503 cedB; DNA import protein CedB
D Pyrde_1032 hypothetical protein K25504 cedA; DNA import protein CedA
D Pyrde_1033 hypothetical protein K25505 cedA1; DNA import protein CedA1
D Pyrde_0781 Cytochrome c biogenesis factor K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D Pyrde_0491 Cytochrome c biogenesis factor K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:pdl02044]
D Pyrde_1193 putative flagellin K07325 flaB; archaeal flagellin FlaB
D Pyrde_1199 putative Flagella-related protein FlaH K07331 flaH; archaeal flagellar protein FlaH
D Pyrde_1164 Type II/IV secretion system protein K07332 flaI; archaeal flagellar protein FlaI
D Pyrde_1200 putative Flagella-related protein FlaI K07332 flaI; archaeal flagellar protein FlaI
D Pyrde_0774 TypeII/TypeIV secretory system protein, ATPase K07332 flaI; archaeal flagellar protein FlaI
D Pyrde_1689 hypothetical protein K07332 flaI; archaeal flagellar protein FlaI
D Pyrde_1165 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D Pyrde_0730 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D Pyrde_1201 putative Flagella-related protein FlaJ K07333 flaJ; archaeal flagellar protein FlaJ
D Pyrde_0773 Type II secretion system (T2SS), protein F K07333 flaJ; archaeal flagellar protein FlaJ
D Pyrde_1700 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D Pyrde_1000 preprotein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D Pyrde_0532 Signal recognition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Pyrde_0463 Signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D Pyrde_0462 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D Pyrde_0653 Signal recognition particle protein K03105 SRP19; signal recognition particle subunit SRP19
D Pyrde_1296 Sec-independent secretion pathway protein K03116 tatA; sec-independent protein translocase protein TatA
D Pyrde_1295 Sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins
C 02022 Two-component system [BR:pdl02022]
D Pyrde_0051 hypothetical protein K18987 irr; two-component system, OmpR family, response regulator Irr
C 02035 Bacterial motility proteins [BR:pdl02035]
D Pyrde_1193 putative flagellin K07325 flaB; archaeal flagellin FlaB
D Pyrde_1199 putative Flagella-related protein FlaH K07331 flaH; archaeal flagellar protein FlaH
D Pyrde_1164 Type II/IV secretion system protein K07332 flaI; archaeal flagellar protein FlaI
D Pyrde_1200 putative Flagella-related protein FlaI K07332 flaI; archaeal flagellar protein FlaI
D Pyrde_0774 TypeII/TypeIV secretory system protein, ATPase K07332 flaI; archaeal flagellar protein FlaI
D Pyrde_1689 hypothetical protein K07332 flaI; archaeal flagellar protein FlaI
D Pyrde_1165 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D Pyrde_0730 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D Pyrde_1201 putative Flagella-related protein FlaJ K07333 flaJ; archaeal flagellar protein FlaJ
D Pyrde_0773 Type II secretion system (T2SS), protein F K07333 flaJ; archaeal flagellar protein FlaJ
D Pyrde_1700 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pdl04812]
D Pyrde_2025 hypothetical protein K06990 MEMO1; MEMO1 family protein
C 04147 Exosome [BR:pdl04147]
D Pyrde_1645 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Pyrde_1674 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Pyrde_1716 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Pyrde_0333 peroxiredoxin family protein K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D Pyrde_0435 translation elongation factor 1A (EF-1A/EF-Tu) K03231 EEF1A; elongation factor 1-alpha
D Pyrde_1572 translation elongation factor 2 (EF-2/EF-G) K03234 EEF2; elongation factor 2
D Pyrde_1874 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Pyrde_0145 putative inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Pyrde_0123 30S ribosomal protein S27Ae K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D Pyrde_1267 putative cell division protein K13525 VCP; transitional endoplasmic reticulum ATPase
D Pyrde_1872 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Pyrde_1503 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Pyrde_0208 fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0210 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0428 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Pyrde_0240 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_0426 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Pyrde_1213 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Pyrde_0999 Adenylate kinase, archaeal type K00939 adk; adenylate kinase [EC:2.7.4.3]
D Pyrde_0373 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Pyrde_0374 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Pyrde_1133 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Pyrde_0040 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Pyrde_1546 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Pyrde_0940 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Pyrde_0429 Electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Pyrde_1598 NADP-specific glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D Pyrde_0049 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:pdl02048]
D Pyrde_0315 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Pyrde_1348 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D Pyrde_0313 CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D Pyrde_1349 CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D Pyrde_0304 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Pyrde_0314 CRISPR-associated protein, Csa1 family K19085 csa1; CRISPR-associated protein Csa1
D Pyrde_1347 CRISPR-associated protein, Csa1 family K19085 csa1; CRISPR-associated protein Csa1
D Pyrde_0307 CRISPR-associated protein, Csa2 family K19074 csa2; CRISPR-associated protein Csa2
D Pyrde_0309 CRISPR-associated protein, Csa3 family K07725 csa3; CRISPR-associated protein Csa3
D Pyrde_0312 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Pyrde_1677 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Pyrde_1350 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Pyrde_0306 CRISPR-associated protein, Cas5a family K19089 cas5a_b_c; CRISPR-associated protein Cas5a/b/c
D Pyrde_1357 CRISPR-associated protein K19076 cmr2; CRISPR-associated protein Cmr2
D Pyrde_1356 CRISPR-associated protein (Cas_Cmr3) K09127 cmr3; CRISPR-associated protein Cmr3
D Pyrde_1361 CRISPR type III-B/RAMP module RAMP protein Cmr4 K09000 cmr4; CRISPR-associated protein Cmr4
D Pyrde_1358 CRISPR-associated protein, Cmr6 family K19142 cmr6; CRISPR-associated protein Cmr6
D Pyrde_1340 hypothetical protein K19143 csx1; CRISPR-associated protein Csx1
D Pyrde_1216 DNA-cytosine modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Pyrde_1586 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D Pyrde_0670 Ribbon-helix-helix protein, copG family K07746 parD1_3_4; antitoxin ParD1/3/4
D Pyrde_2019 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Pyrde_1878 hypothetical protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pdl03100]
D Pyrde_t0018 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Pyrde_t0042 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Pyrde_t0028 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Pyrde_t0014 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0043 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Pyrde_t0034 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Pyrde_t0017 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Pyrde_t0038 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Pyrde_t0026 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Pyrde_t0015 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Pyrde_t0025 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Pyrde_t0009 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Pyrde_t0045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Pyrde_t0019 tRNA-His K14226 tRNA-His; tRNA His
D Pyrde_t0027 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Pyrde_t0020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0046 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0001 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Pyrde_t0041 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Pyrde_t0035 tRNA-Met K14230 tRNA-Met; tRNA Met
D Pyrde_t0033 tRNA-Met K14230 tRNA-Met; tRNA Met
D Pyrde_t0044 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Pyrde_t0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pyrde_t0010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pyrde_t0029 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Pyrde_t0008 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Pyrde_t0021 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Pyrde_t0003 tRNA-Val K14237 tRNA-Val; tRNA Val
D Pyrde_t0022 tRNA-Val K14237 tRNA-Val; tRNA Val
D Pyrde_t0024 tRNA-Val K14237 tRNA-Val; tRNA Val
D Pyrde_r0003 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Pyrde_r0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Pyrde_r0001 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Pyrde_r0004 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Pyrde_1518 NADH oxidase K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18]
D Pyrde_0476 Thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Pyrde_0034 putative desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2]
D Pyrde_1081 Fe-S osidoreductase K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5]
D Pyrde_0740 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Pyrde_1495 Pyruvate-formate lyase-activating enzyme like protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Pyrde_1427 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Pyrde_1079 hypothetical protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Pyrde_1875 putativre O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Pyrde_0677 Diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98]
D Pyrde_0835 hypothetical protein K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D Pyrde_0754 putative molybdenum transport system protein K03813 modD; molybdenum transport protein [EC:2.4.2.-]
D Pyrde_0578 Deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D Pyrde_1542 hypothetical protein K22723 AUR1; inositol phosphorylceramide synthase catalytic subunit [EC:2.7.1.227]
D Pyrde_0895 CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39]
D Pyrde_0228 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Pyrde_1739 hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-]
D Pyrde_1603 hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-]
D Pyrde_1082 putative DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Pyrde_1166 hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-]
D Pyrde_0045 amidohydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D Pyrde_0199 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Pyrde_1061 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Pyrde_1414 hypothetical protein K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3]
D Pyrde_1667 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Pyrde_0113 putative N-glycosylase/DNA lyase K01741 E4.2.99.18; DNA-(apurinic or apyrimidinic site) lyase [EC:4.2.99.18]
D Pyrde_0481 RNA 3'-terminal-phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4]
D Pyrde_0382 RNA ligase, Pab1020 family K07468 K07468; DNA/RNA ligase [EC:6.5.1.-]
D Pyrde_1976 hypothetical protein K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Pyrde_0929 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D Pyrde_0751 hypothetical protein K06206 sfsA; sugar fermentation stimulation protein A
D Pyrde_0035 sugar fermentation stimulation protein A K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D Pyrde_1514 Formate dehydrogenase chain D K02379 fdhD; FdhD protein
D Pyrde_0110 Ferredoxin K05337 fer; ferredoxin
D Pyrde_1523 NADH-ubiquinone oxidoreductase chain D K14090 echE; ech hydrogenase subunit E
D Pyrde_1155 hypothetical protein K02573 napG; ferredoxin-type protein NapG
D Pyrde_1156 polyferredoxin K02574 napH; ferredoxin-type protein NapH
D Pyrde_0430 electron transfer flavoprotein beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
D Pyrde_1161 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D Pyrde_1388 Molybdopterin-guanine dinucleotide biosynthesis protein K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D Pyrde_0241 hypothetical protein K07068 DUF35; scaffold protein (connect acetoacetyl-CoA thiolase and HMG-CoA synthase)
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Pyrde_1220 hypothetical protein K03627 MBF1; putative transcription factor
D Pyrde_1664 DNA/RNA-binding protein K03622 ssh10b; archaea-specific DNA-binding protein
D Pyrde_1708 DNA/RNA-binding protein K03622 ssh10b; archaea-specific DNA-binding protein
D Pyrde_0446 Small nuclear ribonucleoprotein, LSM family K04796 RUXX; small nuclear ribonucleoprotein
D Pyrde_0619 Small nuclear ribonucleoprotein, LSM family K04796 RUXX; small nuclear ribonucleoprotein
D Pyrde_1119 hypothetical protein K07743 K07743; transcriptional regulator
D Pyrde_0667 transcriptional regulator K07744 K07744; transcriptional regulator
D Pyrde_1102 hypothetical protein K07745 K07745; transcriptional regulator
D Pyrde_1496 hypothetical protein K07745 K07745; transcriptional regulator
C 99974 Translation
D Pyrde_0527 hypothetical protein K07572 K07572; putative nucleotide binding protein
D Pyrde_0062 putative exoribonuclease K07577 K07577; putative mRNA 3-end processing factor
D Pyrde_1190 hypothetical protein K07577 K07577; putative mRNA 3-end processing factor
D Pyrde_0520 putative RNA methylase K07579 K07579; putative methylase
D Pyrde_1870 putative Zn-ribbon RNA-binding protein K07580 K07580; Zn-ribbon RNA-binding protein
D Pyrde_2008 hypothetical protein K07581 K07581; RNA-binding protein
C 99975 Protein processing
D Pyrde_1515 formate dehydrogenase formation protein FdhE K02380 fdhE; FdhE protein
D Pyrde_0401 [NiFe] hydrogenase metallocenter assembly protein HypC K04653 hypC; hydrogenase expression/formation protein HypC
D Pyrde_0402 [NiFe] hydrogenase metallocenter assembly protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D Pyrde_0400 [NiFe] hydrogenase metallocenter assembly protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D Pyrde_0399 [NiFe] hydrogenase metallocenter assembly protein HypF K04656 hypF; hydrogenase maturation protein HypF
D Pyrde_0068 putative RNA modification enzyme K07398 K07398; conserved protein with predicted RNA binding PUA domain
D Pyrde_0668 Putative membrane-bound ClpP-class protease K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D Pyrde_0858 hypothetical protein K07445 K07445; putative DNA methylase
D Pyrde_0855 hypothetical protein K07460 yraN; putative endonuclease
D Pyrde_0158 TATA binding protein (TBP)-interacting protein K07472 TIP49; TBP-interacting protein
D Pyrde_0058 hypothetical protein K07477 K07477; translin
D Pyrde_0719 putative transposase K07491 rayT; REP-associated tyrosine transposase
D Pyrde_0718 putative transposase K07496 K07496; putative transposase
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
C 99978 Cell growth
D Pyrde_1064 hypothetical protein K06384 spoIIM; stage II sporulation protein M
C 99993 Cell motility
D Pyrde_1241 hypothetical protein K12548 rap; autoaggregation protein RapA/B/C
D Pyrde_0350 hypothetical protein K23255 pilA; archaeal type IV pilus assembly protein PilA
C 99995 Signaling proteins
D Pyrde_1771 Carbon starvation protein A K06200 cstA; carbon starvation protein
D Pyrde_1499 hypothetical protein K07166 K07166; ACT domain-containing protein
D Pyrde_0553 putative Ser/Thr protein kinase K07176 K07176; putative serine/threonine protein kinase
D Pyrde_1720 hypothetical protein K07182 K07182; CBS domain-containing protein
D Pyrde_0771 circadian clock protein KaiC K08482 kaiC; circadian clock protein KaiC
D Pyrde_0655 hypothetical protein K08482 kaiC; circadian clock protein KaiC
D Pyrde_0469 DNA-binding protein K06875 PDCD5; programmed cell death protein 5
C 99992 Structural proteins
D Pyrde_1848 hypothetical protein K07340 ybbJ; inner membrane protein
C 99994 Others
D Pyrde_1735 phosphate transport system regulator K02039 phoU; phosphate transport system protein
D Pyrde_1805 periplasmic divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D Pyrde_0381 hypothetical protein K07216 hr; hemerythrin
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Pyrde_1049 hypothetical protein K06865 K06865; ATPase
D Pyrde_0960 hypothetical protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D Pyrde_0645 methionyl-tRNA synthetase subunit beta K06878 K06878; tRNA-binding protein
D Pyrde_1832 Iron-sulfur cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Pyrde_1754 Iron-sulfur cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Pyrde_0392 hypothetical protein K07038 K07038; inner membrane protein
D Pyrde_1063 hypothetical protein K07049 K07049; TatD-related deoxyribonuclease
D Pyrde_1519 Phosphoribosyl transferase domain protein K07100 K07100; putative phosphoribosyl transferase
D Pyrde_0501 hypothetical protein K07143 K07143; UPF0148 protein
D Pyrde_0982 hypothetical protein K08975 K08975; putative membrane protein
C 99997 Function unknown
D Pyrde_0067 hypothetical protein K06869 K06869; uncharacterized protein
D Pyrde_0976 hypothetical protein K06869 K06869; uncharacterized protein
D Pyrde_0023 Archaeal serine protease K06870 K06870; uncharacterized protein
D Pyrde_0631 serine protease K06870 K06870; uncharacterized protein
D Pyrde_1285 HD superfamily phosphohydrolase K06885 K06885; uncharacterized protein
D Pyrde_0232 putative hydrolase K06889 K06889; uncharacterized protein
D Pyrde_0876 putative ATPase (AAA+ superfamily) K06921 K06921; uncharacterized protein
D Pyrde_0414 hypothetical protein K06921 K06921; uncharacterized protein
D Pyrde_0418 hypothetical protein K06921 K06921; uncharacterized protein
D Pyrde_1379 putative archaeal ATPase K06921 K06921; uncharacterized protein
D Pyrde_1855 hypothetical protein K06935 K06935; uncharacterized protein
D Pyrde_1022 hypothetical protein K06940 K06940; uncharacterized protein
D Pyrde_1177 hypothetical protein K06940 K06940; uncharacterized protein
D Pyrde_0600 hypothetical protein K06940 K06940; uncharacterized protein
D Pyrde_1130 hypothetical protein K06950 K06950; uncharacterized protein
D Pyrde_1853 hypothetical protein K06953 K06953; uncharacterized protein
D Pyrde_1187 hypothetical protein K06971 K06971; uncharacterized protein
D Pyrde_0562 putative archaeal methyltransferase K06983 K06983; uncharacterized protein
D Pyrde_1397 hypothetical protein K07013 K07013; uncharacterized protein
D Pyrde_0319 hypothetical protein K07013 K07013; uncharacterized protein
D Pyrde_1173 hypothetical protein K07022 K07022; uncharacterized protein
D Pyrde_0448 exonuclease K07041 K07041; uncharacterized protein
D Pyrde_0266 hypothetical protein K07045 K07045; uncharacterized protein
D Pyrde_0848 hypothetical protein K07064 K07064; uncharacterized protein
D Pyrde_0851 putative nucleic acid-binding protein K07064 K07064; uncharacterized protein
D Pyrde_0291 hypothetical protein K07064 K07064; uncharacterized protein
D Pyrde_0806 putative nucleic acid-binding protein K07064 K07064; uncharacterized protein
D Pyrde_1817 putative nucleic acid-binding protein K07064 K07064; uncharacterized protein
D Pyrde_0741 hypothetical protein K07069 K07069; uncharacterized protein
D Pyrde_1630 hypothetical protein K07073 K07073; uncharacterized protein
D Pyrde_1949 hypothetical protein K07090 K07090; uncharacterized protein
D Pyrde_1824 hypothetical protein K07090 K07090; uncharacterized protein
D Pyrde_0537 hypothetical protein K07090 K07090; uncharacterized protein
D Pyrde_0286 Putative phosphoesterase K07095 K07095; uncharacterized protein
D Pyrde_1711 hypothetical protein K07096 K07096; uncharacterized protein
D Pyrde_0133 hypothetical protein K07096 K07096; uncharacterized protein
D Pyrde_0112 hypothetical protein K07097 K07097; uncharacterized protein
D Pyrde_1791 hypothetical protein K07097 K07097; uncharacterized protein
D Pyrde_1394 hypothetical protein K07098 K07098; uncharacterized protein
D Pyrde_0054 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D Pyrde_0623 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D Pyrde_0766 putative transcriptional regulator K07108 K07108; uncharacterized protein
D Pyrde_1659 hypothetical protein K07108 K07108; uncharacterized protein
D Pyrde_0338 hypothetical protein K07108 K07108; uncharacterized protein
D Pyrde_0362 ABC transporter ATP-binding protein K07128 K07128; uncharacterized protein
D Pyrde_1741 hypothetical protein K07131 K07131; uncharacterized protein
D Pyrde_0030 hypothetical protein K07135 K07135; uncharacterized protein
D Pyrde_0790 hypothetical protein K07137 K07137; uncharacterized protein
D Pyrde_0118 hypothetical protein K07158 K07158; uncharacterized protein
D Pyrde_0106 hypothetical protein K09003 K09003; uncharacterized protein
D Pyrde_1862 hypothetical protein K09120 K09120; uncharacterized protein
D Pyrde_1231 hypothetical protein K09122 K09122; uncharacterized protein
D Pyrde_1094 hypothetical protein K09129 K09129; uncharacterized protein
D Pyrde_1149 hypothetical protein K09131 K09131; uncharacterized protein
D Pyrde_1548 hypothetical protein K09137 K09137; uncharacterized protein
D Pyrde_0029 hypothetical protein K09138 K09138; uncharacterized protein
D Pyrde_0167 hypothetical protein K09141 K09141; uncharacterized protein
D Pyrde_0111 hypothetical protein K09147 K09147; uncharacterized protein
D Pyrde_0978 hypothetical protein K09148 K09148; uncharacterized protein
D Pyrde_0342 hypothetical protein K09149 K09149; uncharacterized protein
D Pyrde_1723 hypothetical protein K09149 K09149; uncharacterized protein
D Pyrde_0621 hypothetical protein K09150 K09150; uncharacterized protein
D Pyrde_0214 hypothetical protein K09157 K09157; uncharacterized protein
D Pyrde_1498 hypothetical protein K09157 K09157; uncharacterized protein
D Pyrde_0689 hypothetical protein K09388 K09388; uncharacterized protein
D Pyrde_0812 hypothetical protein K09703 K09703; uncharacterized protein
D Pyrde_0177 hypothetical protein K09715 K09715; uncharacterized protein
D Pyrde_0500 hypothetical protein K09721 K09721; uncharacterized protein
D Pyrde_0644 hypothetical protein K09732 K09732; uncharacterized protein
D Pyrde_0802 hypothetical protein K09736 K09736; uncharacterized protein
D Pyrde_0570 hypothetical protein K09737 K09737; uncharacterized protein
D Pyrde_0518 hypothetical protein K09742 K09742; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 24, 2024