+F Repair protein KO #

  DNA Repair and Recombination Proteins - Parascardovia denticolens

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E PSDT_0459 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSDT_1178 putative adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSDT_0228 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PSDT_0580 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSDT_0741 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E PSDT_0459 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSDT_1178 putative adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSDT_0228 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PSDT_0710 putative exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E PSDT_0985 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E PSDT_0825 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E PSDT_0906 excinuclease subunit A K03701 uvrA; excinuclease ABC subunit A E PSDT_0929 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E PSDT_0824 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E PSDT_0409 putative DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSDT_0881 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSDT_1210 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSDT_0985 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PSDT_1301 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PSDT_1300 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PSDT_1314 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PSDT_1298 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PSDT_0964 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E PSDT_0489 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PSDT_0488 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PSDT_0433 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PSDT_0003 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PSDT_0562 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PSDT_0126 DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PSDT_0646 putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSDT_0111 DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PSDT_0985 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PSDT_0409 putative DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSDT_0881 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSDT_1210 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSDT_0142 hypothetical protein K03111 ssb; single-strand DNA-binding protein E PSDT_0244 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PSDT_1068 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein E PSDT_0074 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PSDT_0149 hypothetical phage protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PSDT_1463 putative endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PSDT_0725 recombinase RecA K03553 recA; recombination protein RecA E PSDT_0806 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PSDT_0805 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSDT_0807 holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PSDT_1296 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E PSDT_0725 recombinase RecA K03553 recA; recombination protein RecA E PSDT_1176 DNA repair protein K04485 radA; DNA repair protein RadA/Sms E PSDT_0004 recombination protein RecF K03629 recF; DNA replication and repair protein RecF E PSDT_1456 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PSDT_0266 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PSDT_0416 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PSDT_0113 recombination protein RecR K06187 recR; recombination protein RecR E PSDT_0523 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PSDT_0806 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PSDT_0805 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSDT_0807 holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PSDT_0389 CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1 E PSDT_1095 CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PSDT_0007 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PSDT_0737 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PSDT_0006 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PSDT_0736 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PSDT_0124 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PSDT_0447 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PSDT_0416 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PSDT_0113 recombination protein RecR K06187 recR; recombination protein RecR F PSDT_0985 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F PSDT_0825 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F PSDT_0906 excinuclease subunit A K03701 uvrA; excinuclease ABC subunit A F PSDT_0929 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PSDT_1232 putative DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PSDT_0945 putative DNA polymerase K03502 umuC; DNA polymerase V D PSDT_0944 putative SOS mutagenesis protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PSDT_0725 recombinase RecA K03553 recA; recombination protein RecA D PSDT_0623 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PSDT_0523 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PSDT_0142 hypothetical protein K03111 ssb; single-strand DNA-binding protein D PSDT_0244 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PSDT_1068 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein D PSDT_0726 putative regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PSDT_0892 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D PSDT_0580 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSDT_0098 conserved hypothetical protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D PSDT_0741 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024