+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Penicillium digitatum</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        PDIP_36530 hypothetical protein	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        PDIP_37010 hypothetical protein	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        PDIP_01800 hypothetical protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        PDIP_86740 mRNA-capping enzyme subunit alpha	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
D      Cap binding complex
E        PDIP_18800 snRNA cap binding complex subunit (Gcr3), putative	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        PDIP_84640 Small subunit of nuclear cap-binding protein complex	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        PDIP_47900 Cleavage and polyadenylation specific factor 5	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        PDIP_60450 mRNA cleavage factor complex II protein Clp1, putative	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        PDIP_34660 MRNA cleavage factor complex component Pcf11, putative	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        PDIP_88920 Cleavage and polyadenylation specificity factor subunit A, putative	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        PDIP_76220 Cleavage and polyadenylylation specificity factor, putative	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        PDIP_11640 Endoribonuclease ysh1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        PDIP_38970 Pre-mRNA polyadenylation factor fip1	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        PDIP_56820 hypothetical protein	K15541 MPE1; protein MPE1 
E        PDIP_85000 WD repeat protein	K15542 PFS2; polyadenylation factor subunit 2 
E        PDIP_59300 WD repeat protein	K14962 WDR82; COMPASS component SWD2 
E        PDIP_70200 Serine/threonine-protein phosphatase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PDIP_20130 Serine/threonine-protein phosphatase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PDIP_71210 hypothetical protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        PDIP_19680 Polyadenylation factor subunit CstF64, putative	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        PDIP_30050 mRNA 3'-end-processing protein rna14	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        PDIP_61190 MRNA cleavage and polyadenylation specificity factor complex subunit (Pta1), putative	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        PDIP_16160 Small nuclear ribonucleoprotein-associated protein B	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        PDIP_25030 Small nuclear ribonucleoprotein SmD3, putative	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        PDIP_22900 Small nuclear ribonucleoprotein SmE, putative	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        PDIP_81430 Small nuclear ribonucleoprotein SmF, putative	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        PDIP_02770 Small nuclear ribonucleoprotein SmG, putative	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        PDIP_76220 Cleavage and polyadenylylation specificity factor, putative	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        PDIP_11640 Endoribonuclease ysh1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        PDIP_19680 Polyadenylation factor subunit CstF64, putative	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        PDIP_61190 MRNA cleavage and polyadenylation specificity factor complex subunit (Pta1), putative	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        PDIP_50480 hypothetical protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        PDIP_88380 Transcription initiation protein spt5	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        PDIP_54270 hypothetical protein	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
D      Poly(A) addition factors
E        PDIP_88520 Poly(A) polymerase Pap	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
D      PDIP_67500 hypothetical protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      PDIP_02970 Arsenite resistance protein Ars2, putative	K27103 SRRT; serrate RNA effector molecule 
D      PDIP_24700 Nuclear polyadenylated RNA-binding protein Nab2, putative	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        PDIP_72120 hypothetical protein	K12876 RBM8A; RNA-binding protein 8A 
E        PDIP_27470 hypothetical protein	K12877 MAGOH; protein mago nashi 
E        PDIP_51970 RNA binding protein, putative	K12881 THOC4; THO complex subunit 4 
E        PDIP_81630 hypothetical protein	K12881 THOC4; THO complex subunit 4 
E        PDIP_61710 ATP-dependent RNA helicase SUB2	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        PDIP_48340 Eukaryotic translation initiation factor eIF-4A subunit, putative	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        PDIP_30310 hypothetical protein	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        PDIP_11810 hypothetical protein	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        PDIP_06630 Serine/arginine repetitive matrix protein 1	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        PDIP_15630 THO complex subunit Tho1, putative	K12878 THOC1; THO complex subunit 1 
E        PDIP_50770 THO complex component (Rlr1), putative	K12879 THOC2; THO complex subunit 2 
E        PDIP_85950 WD repeat-containing protein	K12880 THOC3; THO complex subunit 3 
E        PDIP_51970 RNA binding protein, putative	K12881 THOC4; THO complex subunit 4 
E        PDIP_81630 hypothetical protein	K12881 THOC4; THO complex subunit 4 
E        PDIP_70910 hypothetical protein	K13174 THOC5; THO complex subunit 5 
D      TREX-2 complex
E        PDIP_46560 hypothetical protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        PDIP_06110 hypothetical protein	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        PDIP_52310 Leucine permease transcriptional regulator (SAC3), putative	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        PDIP_45090 Filament-forming protein (Tpr/p270), putative	K09291 TPR; nucleoprotein TPR 
E        PDIP_41600 Nuclear pore complex protein (SonA), putative	K14298 RAE1; mRNA export factor 
E        PDIP_21810 Nuclear pore complex subunit (SEC13), putative	K14004 SEC13; protein transport protein SEC13 
E        PDIP_26890 Nucleoporin, putative	K14308 NUP54; nuclear pore complex protein Nup54 
E        PDIP_72190 Nucleoporin Nsp1, putative	K14306 NUP62; nuclear pore complex protein Nup62 
E        PDIP_14830 Nuclear pore protein (Nic96), putative	K14309 NUP93; nuclear pore complex protein Nup93 
E        PDIP_33400 hypothetical protein	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        PDIP_27350 Nuclear pore complex protein Nup107, putative	K14301 NUP107; nuclear pore complex protein Nup107 
E        PDIP_22100 Nuclear pore complex subunit Nup133, putative	K14300 NUP133; nuclear pore complex protein Nup133 
E        PDIP_26480 Nucleoporin (Nup184), putative	K14311 NUP188; nuclear pore complex protein Nup188 
E        PDIP_22860 Non-repetitive nucleoporin, putative	K14312 NUP155; nuclear pore complex protein Nup155 
E        PDIP_06060 hypothetical protein	K14303 NUP160; nuclear pore complex protein Nup160 
E        PDIP_58200 Nuclear pore complex subunit Nup192, putative	K14310 NUP205; nuclear pore complex protein Nup205 
E        PDIP_39010 Nucleoporin NUP49/NSP49, putative	K14307 NUPL1; nucleoporin p58/p45 
E        PDIP_12920 Nuclear envelope protein, putative	K14315 NDC1; nucleoporin NDC1 
E        PDIP_10710 Nuclear pore protein (SEH1), putative	K14299 SEH1; nucleoporin SEH1 
E        PDIP_37250 Nuclear pore complex subunit Nup159, putative	K18715 NUP159; nucleoporin NUP159 
E        PDIP_08160 hypothetical protein	K18716 NUP42; nucleoporin NUP42 
E        PDIP_84650 hypothetical protein	K18719 NUP82; nucleoporin NUP82 
E        PDIP_30530 RNA export mediator gle1, putative	K18723 GLE1; nucleoporin GLE1 
E        PDIP_16280 hypothetical protein	K14285 NXT1_2; NTF2-related export protein 1/2 
E        PDIP_01200 Nuclear envelope pore membrane protein, putative	K18725 POM152; nucleoporin POM152 
D      Ran-mediated transport factors
E        PDIP_45750 GTP-binding nuclear protein GSP1/Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        PDIP_66770 hypothetical protein	K18726 FAF2; FAS-associated factor 2 
E        PDIP_38040 Cdc48p	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        PDIP_41750 Exportin KapK	K14290 XPO1; exportin-1 
E        PDIP_10080 Ran GTPase activating protein 1 (RNA1 protein)	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        PDIP_55360 Cap binding protein	K03259 EIF4E; translation initiation factor 4E 
E        PDIP_49190 Translation initiation factor eIF4E3, putative	K03259 EIF4E; translation initiation factor 4E 
E        PDIP_00040 Eukaryotic translation initiation factor 4, putative	K03257 EIF4A; translation initiation factor 4A 
E        PDIP_37570 Translation initiation factor 4B	K03258 EIF4B; translation initiation factor 4B 
E        PDIP_09700 DEAD/DEAH box RNA helicase, putative	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        PDIP_12260 ATP dependent RNA helicase (Dbp1), putative	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        PDIP_34840 hypothetical protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        PDIP_20770 Polyadenylate-binding protein	K13126 PABPC; polyadenylate-binding protein 
E        PDIP_64670 DEAD/DEAH box RNA helicase (Ski2), putative	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        PDIP_77500 DEAD/DEAH box helicase, putative	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        PDIP_40170 hypothetical protein	K07575 MCTS; malignant T-cell-amplified sequence 
E        PDIP_42110 RNA binding protein Tma22, putative	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        PDIP_24720 RNA binding protein Pym, putative	K14294 WIBG; partner of Y14 and mago 
E        PDIP_32470 Heterogeneous nuclear ribonucleoprotein HRP1	K14411 MSI; RNA-binding protein Musashi 
E        PDIP_80030 Translation elongation factor EF-1 subunit, putative	K14416 HBS1; elongation factor 1 alpha-like protein 
E        PDIP_70010 Translation factor pelota, putative	K06965 PELO; protein pelota 
E        PDIP_41010 hypothetical protein	K14396 PABPN1; polyadenylate-binding protein 2 
E        PDIP_07050 ATP dependent RNA helicase (Dbp5), putative	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        PDIP_59920 Pre-mRNA-splicing factor syf1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        PDIP_78780 hypothetical protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        PDIP_14810 Ran exchange factor Prp20/Pim1, putative	K11493 RCC1; regulator of chromosome condensation 
E        PDIP_15380 hypothetical protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        PDIP_22340 Peptide chain release factor eRF/aRF, subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        PDIP_37170 Translation release factor eRF3, putative	K03267 ERF3; peptide chain release factor subunit 3 
E        PDIP_26520 Regulator of nonsense transcript, putative	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        PDIP_54560 Nonsense-mediated mRNA decay factor (Upf2), putative	K14327 UPF2; regulator of nonsense transcripts 2 
E        PDIP_05250 Nonsense-mediated mRNA decay protein Upf3, putative	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        PDIP_39130 Serine/threonine-protein phosphatase	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        PDIP_73890 Protein phosphatase 2a 65kd regulatory sububit	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        PDIP_03620 Protein phosphatase PP2A regulatory B subunit, putative	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        PDIP_48570 Protein phosphatase regulatory subunit (Ssc1), putative	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        PDIP_34840 hypothetical protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        PDIP_82230 hypothetical protein	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        PDIP_31490 hypothetical protein	K14844 PUF6; pumilio homology domain family member 6 
E        PDIP_71440 hypothetical protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        PDIP_37280 hypothetical protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        PDIP_22230 Class V myosin (Myo4), putative	K10357 MYO5; myosin V 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        PDIP_69010 Elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        PDIP_18010 hypothetical protein	K03233 EEF1G; elongation factor 1-gamma 
E        PDIP_11910 Translation elongation factor eEF-1B gamma subunit, putative	K03233 EEF1G; elongation factor 1-gamma 
E        PDIP_07850 hypothetical protein	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        PDIP_30520 Cell wall biogenesis protein phosphatase Ssd1, putative	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        PDIP_49240 Exonuclease Kem1, putative	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        PDIP_30060 Eukaryotic translation initiation factor eIF-2C4, putative	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        PDIP_44340 hypothetical protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        PDIP_55360 Cap binding protein	K03259 EIF4E; translation initiation factor 4E 
E        PDIP_49190 Translation initiation factor eIF4E3, putative	K03259 EIF4E; translation initiation factor 4E 
E        PDIP_26520 Regulator of nonsense transcript, putative	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        PDIP_09700 DEAD/DEAH box RNA helicase, putative	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        PDIP_12260 ATP dependent RNA helicase (Dbp1), putative	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        PDIP_01520 hypothetical protein	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        PDIP_27260 hypothetical protein	K18749 LSM14; protein LSM14 
E        PDIP_65600 Importin beta-2 subunit, putative	K18752 TNPO1; transportin-1 
E        PDIP_51730 Protein kinase A catalytic subunit 2	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        PDIP_89420 CAMP-dependent protein kinase PKAC catalytic subunit	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        PDIP_40240 hypothetical protein	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        PDIP_59250 Decapping enzyme Dcp2, putative	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        PDIP_16600 hypothetical protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        PDIP_04700 hypothetical protein	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        PDIP_82240 U6 small nuclear ribonucleoprotein (Lsm3), putative	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        PDIP_32020 U6 snRNA-associated Sm-like protein LSM4, putative	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        PDIP_68050 hypothetical protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        PDIP_66820 Small nuclear ribonucleoprotein (LSM7), putative	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        PDIP_28420 U6 snrna-associated sm-like protein, putative	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        PDIP_22230 Class V myosin (Myo4), putative	K10357 MYO5; myosin V 
E        PDIP_63480 Tubulin alpha-1 subunit	K07374 TUBA; tubulin alpha 
E        PDIP_28860 Ccr4-Not transcription complex subunit (NOT1), putative	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        PDIP_10600 NOT2 family protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        PDIP_07970 CCR4-NOT transcription complex, subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        PDIP_36130 CCR4-NOT core complex subunit Not4, putative	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        PDIP_44780 Transcription factor, putative	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        PDIP_52990 CCR4-NOT core complex subunit Caf1, putative	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        PDIP_80040 PAB-dependent poly(A)-specific ribonuclease subunit (Pan2), putative	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        PDIP_66780 Poly(A)-binding protein-dependent poly(A) ribonuclease, putative	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        PDIP_57480 Topisomerase II associated protein (Pat1), putative	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        PDIP_81990 hypothetical protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        PDIP_54560 Nonsense-mediated mRNA decay factor (Upf2), putative	K14327 UPF2; regulator of nonsense transcripts 2 
E        PDIP_05250 Nonsense-mediated mRNA decay protein Upf3, putative	K14328 UPF3; regulator of nonsense transcripts 3 
E        PDIP_03820 RNA polymerase II subunit 7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Stress granule specific factors
E        PDIP_76770 Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        PDIP_20770 Polyadenylate-binding protein	K13126 PABPC; polyadenylate-binding protein 
E        PDIP_54940 hypothetical protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        PDIP_01030 Eukaryotic translation initiation factor subunit eIF2A, putative	K15026 EIF2A; translation initiation factor 2A 
E        PDIP_63020 Eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        PDIP_00040 Eukaryotic translation initiation factor 4, putative	K03257 EIF4A; translation initiation factor 4A 
E        PDIP_48340 Eukaryotic translation initiation factor eIF-4A subunit, putative	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        PDIP_37570 Translation initiation factor 4B	K03258 EIF4B; translation initiation factor 4B 
E        PDIP_44400 G-protein comlpex beta subunit CpcB	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        PDIP_47880 Histone deacetylase HdaA	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        PDIP_59250 Decapping enzyme Dcp2, putative	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        PDIP_01520 hypothetical protein	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        PDIP_81990 hypothetical protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        PDIP_57480 Topisomerase II associated protein (Pat1), putative	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        PDIP_16600 hypothetical protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        PDIP_04700 hypothetical protein	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        PDIP_82240 U6 small nuclear ribonucleoprotein (Lsm3), putative	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        PDIP_32020 U6 snRNA-associated Sm-like protein LSM4, putative	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        PDIP_68050 hypothetical protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        PDIP_66820 Small nuclear ribonucleoprotein (LSM7), putative	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        PDIP_28420 U6 snrna-associated sm-like protein, putative	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        PDIP_49240 Exonuclease Kem1, putative	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        PDIP_67390 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        PDIP_87100 MRNA decapping hydrolase, putative	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        PDIP_81790 Exosome complex subunit Csl4, putative	K07573 CSL4; exosome complex component CSL4 
E        PDIP_01140 Exosome complex exonuclease Rrp4, putative	K03679 RRP4; exosome complex component RRP4 
E        PDIP_75810 Exosome complex exonuclease Rrp40, putative	K03681 RRP40; exosome complex component RRP40 
E        PDIP_71190 Exosome complex component ski6	K11600 RRP41; exosome complex component RRP41 
E        PDIP_07150 Exosome complex subunit Rrp46, putative	K12590 RRP46; exosome complex component RRP46 
E        PDIP_80630 3' exoribonuclease family protein	K12587 MTR3; exosome complex component MTR3 
E        PDIP_34990 3' exoribonuclease family protein (Rrp42), putative	K12589 RRP42; exosome complex component RRP42 
E        PDIP_62160 3' exoribonuclease family protein	K12586 RRP43; exosome complex component RRP43 
E        PDIP_84320 Exosome complex endonuclease 2/ribosomal RNA processing protein, putative	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        PDIP_85890 Exosome complex exonuclease exoribonuclease (Rrp44), putative	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        PDIP_76390 Exosome complex exonuclease Rrp6, putative	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        PDIP_00650 Exosome-associated family protein	K12592 C1D; exosome complex protein LRP1 
E        PDIP_80970 DEAD/DEAH box helicase, putative	K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] 
D      TRAMP complex
E        PDIP_82570 Topoisomerase family protein TRF4, putative	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        PDIP_44290 hypothetical protein	K12597 AIR1_2; protein AIR1/2 
E        PDIP_12850 ATP dependent RNA helicase (Dob1), putative	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        PDIP_64670 DEAD/DEAH box RNA helicase (Ski2), putative	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        PDIP_08600 Translation repressor/antiviral protein Ski3, putative	K12600 SKI3; superkiller protein 3 
E        PDIP_41890 Meiotic recombination protein Ski8/Rec14, putative	K12601 SKI8; superkiller protein 8 
D      Ccr4-NOT complex
E        PDIP_44780 Transcription factor, putative	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        PDIP_28860 Ccr4-Not transcription complex subunit (NOT1), putative	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        PDIP_10600 NOT2 family protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        PDIP_07970 CCR4-NOT transcription complex, subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        PDIP_36130 CCR4-NOT core complex subunit Not4, putative	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        PDIP_52990 CCR4-NOT core complex subunit Caf1, putative	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        PDIP_85760 Cell differentiation protein (Rcd1), putative	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        PDIP_18740 ABC transporter, putative	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        PDIP_19900 hypothetical protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        PDIP_80040 PAB-dependent poly(A)-specific ribonuclease subunit (Pan2), putative	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        PDIP_66780 Poly(A)-binding protein-dependent poly(A) ribonuclease, putative	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        PDIP_38190 CAF1 family ribonuclease, putative	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        PDIP_87100 MRNA decapping hydrolase, putative	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        PDIP_45870 hypothetical protein	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        PDIP_20080 Protein vts1	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        PDIP_26310 Nucleolar RNAse III, putative	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        PDIP_74250 RNA exonuclease Rex2, putative	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        PDIP_68590 Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        PDIP_77920 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        PDIP_64710 Mitochondrial Hsp70 chaperone (Ssc70), putative	K04043 dnaK; molecular chaperone DnaK 
E        PDIP_19430 Antigenic mitochondrial protein HSP60, putative	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        PDIP_01140 Exosome complex exonuclease Rrp4, putative	K03679 RRP4; exosome complex component RRP4 
E        PDIP_81790 Exosome complex subunit Csl4, putative	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        PDIP_71190 Exosome complex component ski6	K11600 RRP41; exosome complex component RRP41 
E        PDIP_34990 3' exoribonuclease family protein (Rrp42), putative	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024