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Transcription Machinery - Penicillium digitatum
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E PDIP_66280 DNA-directed RNA polymerase K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E PDIP_55940 DNA-directed RNA polymerase K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E PDIP_35060 RNA polymerase II subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E PDIP_82960 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E PDIP_06700 Polymerase (RNA) II (DNA directed) polypeptide D K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E PDIP_03820 RNA polymerase II subunit 7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E PDIP_84690 DNA-directed RNA polymerase subunit K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E PDIP_66930 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PDIP_19870 DNA-directed RNA polymerase I, II, and III subunit Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PDIP_60630 DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PDIP_86130 Hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E PDIP_56710 DNA-directed RNA polymerases N/8 kDa subunit superfamily K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E PDIP_66180 Transcription factor TFIIA complex subunit Toa1, putative K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E PDIP_81050 Transcription initiation factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E PDIP_74110 Transcription initiation protein K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E PDIP_28730 RNA polymerase I and III transcription factor complex component Tbp, putative K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E PDIP_79570 Transcription factor TFIID complex 145 kDa subunit, putative K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48]
E PDIP_02780 Transcription initiation factor TFIID subunit TSM1/127kD, putative K03128 TAF2; transcription initiation factor TFIID subunit 2
E PDIP_04270 hypothetical protein K14650 TAF3; transcription initiation factor TFIID subunit 3
E PDIP_83490 Transcription initiation factor TFIID subunit, putative K03130 TAF5; transcription initiation factor TFIID subunit 5
E PDIP_51260 Transcription initiation factor TFIID complex 60 kDa subunit K03131 TAF6; transcription initiation factor TFIID subunit 6
E PDIP_04240 Transcription initiation factor TFIID subunit 7, putative K03132 TAF7; transcription initiation factor TFIID subunit 7
E PDIP_66360 Transcription initiation factor TFIID, 31kD subunit, putative K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E PDIP_60390 TFIID and and SAGA complex TAF10 subunit, putative K03134 TAF10; transcription initiation factor TFIID subunit 10
E PDIP_51240 Transcription initiation factor TFIID subunit beta, putative K03135 TAF11; transcription initiation factor TFIID subunit 11
E PDIP_00900 Transcription initiation factor TFIID subunit 12, putative K03126 TAF12; transcription initiation factor TFIID subunit 12
E PDIP_41210 Transcription initiation factor TFIID subunit 13 K03127 TAF13; transcription initiation factor TFIID subunit 13
E PDIP_59470 Transcription initiation factor subunit (TAF30), putative K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit
D TFIIE
E PDIP_84930 Transcription factor TFIIE complex alpha subunit, putative K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E PDIP_45080 Transcription initiation factor TFIIE, beta subunit, putative K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E PDIP_03560 Transcription initiation factor iif, beta subunit K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E PDIP_43030 RNA polymerase II transcription factor related protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E PDIP_26180 RNA polymerase TFIIH complex subunit Ssl1, putative K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E PDIP_60270 Transcription factor TFIIH subunit Tfb4, putative K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E PDIP_15600 TFIIH and nucleotide excision repair factor 3 complexes subunit (Tfb2), putative K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E PDIP_49050 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E PDIP_67210 TFIIH complex helicase Rad3, putative K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E PDIP_01800 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E PDIP_21600 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E PDIP_53110 Cyclin Ccl1, putative K06634 CCNH; cyclin H
C Mediator complex
D Head
E PDIP_18270 RNA polymerase II transcription mediator complex subunit (Med6), putative K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E PDIP_88230 RNA polymerase II mediator complex component Med8, putative K15130 MED8; mediator of RNA polymerase II transcription subunit 8, fungi type
E PDIP_77950 Mediator of RNA polymerase II transcription subunit 17 K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type
E PDIP_68660 hypothetical protein K15136 SRB5; mediator of RNA polymerase II transcription subunit 18, fungi type
D Middle
E PDIP_13610 Mediator of RNA polymerase II transcription subunit 5 K15147 MED5; mediator of RNA polymerase II transcription subunit 5
E PDIP_47060 Mediator of RNA polymerase II transcription subunit 7 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E PDIP_69490 Mediator of RNA polymerase II transcription subunit 10 K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E PDIP_79330 RNA polymerase II transcription mediator complex subunit Srb7, putative K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E PDIP_24240 RNA polymerase II mediator complex subunit Soh1, putative K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E PDIP_56860 RNA polymerase II holoenzyme/mediator complex component Rgr1, putative K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E PDIP_31430 Mediator of RNA polymerase II transcription subunit 16 K15160 SIN4; mediator of RNA polymerase II transcription subunit 16, fungi type
D CDK-module
E PDIP_24170 Meiotic mRNA stability protein kinase UME5 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E PDIP_80900 RNA polymerase II holoenzyme cyclin-like subunit K15161 CCNC; cyclin-C
E PDIP_00520 Mediator of RNA polymerase II transcription subunit 12 K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type
E PDIP_80250 hypothetical protein K15165 SSN2; mediator of RNA polymerase II transcription subunit 13, fungi type
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
E PDIP_43390 Histone acetyltransferase (Gcn5), putative K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E PDIP_87400 Histone acetyltransferase GCN5 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E PDIP_48510 Histone acetylase complex subunit, putative K08874 TRRAP; transformation/transcription domain-associated protein
E PDIP_67090 Transcription factor spt3, putative K11313 SUPT3H; transcription initiation protein SPT3
E PDIP_30070 Transcriptional activator spt7 K11359 SPT7; transcriptional activator SPT7
E PDIP_50360 Transcription factor (SPT8), putative K11360 SPT8; transcriptional activator SPT8
E PDIP_05340 hypothetical protein K11361 SPT20; transcription factor SPT20
E PDIP_64060 SAGA complex subunit (Ada2), putative K11314 TADA2A; transcriptional adapter 2-alpha
E PDIP_20630 Transcriptional regulator Ngg1, putative K11315 TADA3; transcriptional adapter 3
E PDIP_02780 Transcription initiation factor TFIID subunit TSM1/127kD, putative K03128 TAF2; transcription initiation factor TFIID subunit 2
E PDIP_83490 Transcription initiation factor TFIID subunit, putative K03130 TAF5; transcription initiation factor TFIID subunit 5
E PDIP_51260 Transcription initiation factor TFIID complex 60 kDa subunit K03131 TAF6; transcription initiation factor TFIID subunit 6
E PDIP_04240 Transcription initiation factor TFIID subunit 7, putative K03132 TAF7; transcription initiation factor TFIID subunit 7
E PDIP_66360 Transcription initiation factor TFIID, 31kD subunit, putative K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E PDIP_60390 TFIID and and SAGA complex TAF10 subunit, putative K03134 TAF10; transcription initiation factor TFIID subunit 10
E PDIP_00900 Transcription initiation factor TFIID subunit 12, putative K03126 TAF12; transcription initiation factor TFIID subunit 12
E PDIP_27680 SAGA complex component (Sgf29), putative K11364 SGF29; SAGA-associated factor 29
E PDIP_06170 hypothetical protein K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E PDIP_45550 Ubiquitin Carboxy-terminal hydrolase Ubp8, putative K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E PDIP_45920 Pre-mRNA-splicing factor rse1 K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E PDIP_38010 SWI-SNF complex subunit (Snf5), putative K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E PDIP_54390 RSC complex subunit (RSC8), putative K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E PDIP_69080 SWI-SNF complex subunit (BAF60b), putative K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
D SWI/SNF complex
E PDIP_29650 hypothetical protein K11771 SWI1; SWI/SNF chromatin-remodeling complex subunit SWI1
E PDIP_50150 RSC complex subunit (Sth1), putative K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
E PDIP_38010 SWI-SNF complex subunit (Snf5), putative K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E PDIP_67510 Chromatin remodeling complex subunit (Arp9), putative K11768 ARP9; actin-related protein 9
E PDIP_59470 Transcription initiation factor subunit (TAF30), putative K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit
D RSC complex
E PDIP_01260 RSC complex subunit (RSC1), putative K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2
E PDIP_69300 Nuclear localization protein NPL6, putative K11761 NPL6; chromatin structure-remodeling complex protein RSC7
E PDIP_36740 Chromatin remodeling complex subunit (Rsc9), putative K11763 RSC9; chromatin structure-remodeling complex subunit RSC9
E PDIP_67510 Chromatin remodeling complex subunit (Arp9), putative K11768 ARP9; actin-related protein 9
E PDIP_21770 RSC complex subunit Sfh1, putative K11770 SFH1; chromatin structure-remodeling complex subunit SFH1
E PDIP_50150 RSC complex subunit (Sth1), putative K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
D Others
C Other transcription-related factors
D Transcription elongation factors
E PDIP_10070 Transcription elongation factor S-II K03145 TFIIS; transcription elongation factor S-II
E PDIP_50480 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E PDIP_88380 Transcription initiation protein spt5 K15172 SUPT5H; transcription elongation factor SPT5
E PDIP_01110 Transcription elongation factor spt6 K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E PDIP_34660 MRNA cleavage factor complex component Pcf11, putative K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E PDIP_88920 Cleavage and polyadenylation specificity factor subunit A, putative K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E PDIP_11640 Endoribonuclease ysh1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E PDIP_20130 Serine/threonine-protein phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PDIP_70200 Serine/threonine-protein phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PDIP_61190 MRNA cleavage and polyadenylation specificity factor complex subunit (Pta1), putative K06100 SYMPK; symplekin
E PDIP_71210 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E PDIP_67390 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E PDIP_18720 Protein rai1 K14845 RAI1; RAT1-interacting protein
E PDIP_25380 hypothetical protein K15559 RTT103; regulator of Ty1 transposition protein 103
E PDIP_34740 hypothetical protein K15560 NRD1; protein NRD1
E PDIP_61490 tRNA-splicing endonuclease, putative K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E PDIP_84680 Peptidyl-prolyl cis/trans isomerase K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E PDIP_63690 hypothetical protein K15174 PAF1; RNA polymerase II-associated factor 1
E PDIP_10680 Pol II transcription elongation factor subunit Cdc73, putative K15175 CDC73; parafibromin
E PDIP_22560 RNA polymerase II transcription elongation factor (Ctr9), putative K15176 CTR9; RNA polymerase-associated protein CTR9
E PDIP_41400 hypothetical protein K15177 LEO1; RNA polymerase-associated protein LEO1
E PDIP_07690 hypothetical protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
D Super elongation complex (SEC)
E PDIP_24870 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL
D Little elongation complex (LEC)
E PDIP_24870 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL
D Brd4/P-TEFb complex
D BUR kinase complex
E PDIP_22190 Serine/threonine-protein kinase bur1 K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23]
E PDIP_28680 Cyclin, putative K15563 BUR2; protein BUR2
D CTDK-I complex
E PDIP_49200 Protein kinase, putative K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23]
E PDIP_25770 Cyclin, putative K15564 CTK2; CTD kinase subunit beta
D 7SK RNP complex
D DBIRD complex
D Others
E PDIP_67520 hypothetical protein K21751 DR1; down-regulator of transcription 1
E PDIP_78270 hypothetical protein K21752 DRAP1; Dr1-associated corepressor
E PDIP_29600 RNA Polymerase II CTD phosphatase Fcp1, putative K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E PDIP_20410 General stress response phosphoprotein phosphatase Psr1/2, putative K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E PDIP_26900 Transcription factor iws1 K17498 SPN1; transcription factor SPN1
E PDIP_01070 Transcription factor Rba50, putative K20826 RPAP1; RNA polymerase II-associated protein 1
E PDIP_64320 hypothetical protein K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E PDIP_18820 Transcriptional repressor TupA/RocA, putative K06666 TUP1; general transcriptional corepressor TUP1
E PDIP_61540 MADS box transcription factor Mcm1 K12412 MCM1; pheromone receptor transcription factor
E PDIP_31280 GPN-loop GTPase 3, putative K24104 GPN; GPN-loop GTPase
E PDIP_38900 ATP binding protein, putative K24104 GPN; GPN-loop GTPase
E PDIP_42920 ATP binding protein, putative K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E PDIP_23920 DNA-directed RNA polymerase K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E PDIP_63390 DNA-directed RNA polymerase K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E PDIP_78820 DNA-directed RNA polymerase I and III subunit Rpc40, putative K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PDIP_18050 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E PDIP_34820 DNA directed RNA polymerase III subunit Rpc82, putative K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E PDIP_80450 DNA-directed RNA polymerase III RPC4, putative K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E PDIP_55910 DNA-directed RNA polymerase III subunit Rpc34, putative K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E PDIP_50670 hypothetical protein K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E PDIP_61090 hypothetical protein K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E PDIP_69000 DNA-directed RNA polymerase subunit K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E PDIP_66930 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PDIP_19870 DNA-directed RNA polymerase I, II, and III subunit Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PDIP_60630 DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PDIP_86130 Hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E PDIP_56710 DNA-directed RNA polymerases N/8 kDa subunit superfamily K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E PDIP_19880 hypothetical protein K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E PDIP_28730 RNA polymerase I and III transcription factor complex component Tbp, putative K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E PDIP_74540 Transcription factor TFIIIB complex subunit Brf1, putative K15196 BRF1; transcription factor IIIB 90 kDa subunit
E PDIP_17810 hypothetical protein K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E PDIP_20090 RNA polymerase III transcription factor TFIIIC subunit (Tfc4), putative K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E PDIP_48580 RNA polymerase III transcription factor subunit, putative K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
D TFIIIC, fungi type
E PDIP_48580 RNA polymerase III transcription factor subunit, putative K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E PDIP_20090 RNA polymerase III transcription factor TFIIIC subunit (Tfc4), putative K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E PDIP_29040 Transcription factor TFIIIC complex subunit Tfc6, putative K15205 TFC6; transcription factor C subunit 6
E PDIP_65480 hypothetical protein K15206 TFC7; transcription factor C subunit 7
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
E PDIP_07290 hypothetical protein K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E PDIP_67230 DNA-directed RNA polymerase K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E PDIP_32590 DNA-directed RNA polymerase K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E PDIP_78820 DNA-directed RNA polymerase I and III subunit Rpc40, putative K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PDIP_18050 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E PDIP_54070 hypothetical protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E PDIP_56240 RNA polymerase I subunit Rpa43, putative K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
D Pol I, II, III common subunits
E PDIP_66930 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PDIP_19870 DNA-directed RNA polymerase I, II, and III subunit Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PDIP_60630 DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PDIP_86130 Hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E PDIP_56710 DNA-directed RNA polymerases N/8 kDa subunit superfamily K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E PDIP_28730 RNA polymerase I and III transcription factor complex component Tbp, putative K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
D Transcription initiation factors
E PDIP_63550 RNA polymerase I specific transcription initiation factor RRN3 superfamily K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E PDIP_54380 hypothetical protein K15217 RRN5; RNA polymerase I-specific transcription initiation factor RRN5
E PDIP_41910 hypothetical protein K15218 RRN6; RNA polymerase I-specific transcription initiation factor RRN6
E PDIP_21200 RNA polymerase I specific transcription initiation factor Rrn7, putative K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7
E PDIP_63780 hypothetical protein K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11
E PDIP_63010 hypothetical protein K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E PDIP_50480 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E PDIP_88380 Transcription initiation protein spt5 K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E PDIP_43980 SNF2 family helicase/ATPase, putative K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
E PDIP_49200 Protein kinase, putative K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23]
E PDIP_25770 Cyclin, putative K15564 CTK2; CTD kinase subunit beta
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E PDIP_74110 Transcription initiation protein K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E PDIP_84930 Transcription factor TFIIE complex alpha subunit, putative K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 17, 2025