+D GENES KO
#
KEGG Orthology (KO) - Polynucleobacter duraquae
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pdq00010]
D CL55_00007130 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CL55_00005770 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CL55_00017970 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CL55_00007530 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CL55_00002330 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CL55_00017990 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CL55_00019330 phosphoglycerate mutase, BPG-dependent K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CL55_00020240 Fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CL55_00010500 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CL55_00017980 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CL55_00013920 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CL55_00011480 pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CL55_00011470 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00007020 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CL55_00007120 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CL55_00020550 Phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:pdq00020]
D CL55_00011190 citrate synthase I (hexameric type) K01647 CS; citrate synthase [EC:2.3.3.1]
D CL55_00010470 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CL55_00003770 isocitrate dehydrogenase, NADP-dependent, monomeric type K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CL55_00009570 2-oxoglutarate dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D CL55_00009580 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00018090 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CL55_00018100 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CL55_00011220 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CL55_00011210 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CL55_00011240 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CL55_00011230 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D CL55_00014460 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CL55_00014510 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CL55_00014500 Succinate dehydrogenase, hydrophobic anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D CL55_00014490 succinate dehydrogenase, cytochrome b556 subunit K00247 frdD; succinate dehydrogenase subunit D
D CL55_00007010 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D CL55_00014480 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CL55_00011260 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CL55_00020550 Phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D CL55_00011480 pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CL55_00011470 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:pdq00030]
D CL55_00007130 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CL55_00001490 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CL55_00002320 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CL55_00011680 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CL55_00011670 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D CL55_00007120 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CL55_00019050 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CL55_00015380 Lactate dehydrogenase and related dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D CL55_00001790 Aldehyde:ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D CL55_00018740 Putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CL55_00017970 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CL55_00005770 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:pdq00040]
D CL55_00015760 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CL55_00017120 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CL55_00001490 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:pdq00051]
D CL55_00003090 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D CL55_00007120 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CL55_00002910 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003080 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003100 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003180 Nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D CL55_00005770 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CL55_00017970 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CL55_00007530 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CL55_00019380 Phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:pdq00052]
D CL55_00002570 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CL55_00017120 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CL55_00007120 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism
D CL55_00015760 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:pdq00500]
D CL55_00017120 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CL55_00008910 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CL55_00007120 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CL55_00007130 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pdq00520]
D CL55_00015110 Beta-glucosidase-related glycosidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CL55_00019760 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CL55_00007910 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CL55_00019770 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CL55_00018670 putative molecular chaperone distantly related to HSP70-fold metalloprotease K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D CL55_00015890 2-phosphoglycolate phosphatase, prokaryotic K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D CL55_00018560 putative phosphotransferase related to Ser/Thr protein kinase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D CL55_00018570 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D CL55_00001030 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CL55_00002990 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CL55_00003250 putative nucleoside-diphosphate sugar epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CL55_00014920 Glycosyltransferases involved in cell wall biogenesis K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D CL55_00014950 putative xylanase/chitin deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D CL55_00009010 Nucleoside-diphosphate-sugar epimerase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D CL55_00007120 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CL55_00017120 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CL55_00015760 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CL55_00002570 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CL55_00019380 Phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D CL55_00007130 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CL55_00003090 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D CL55_00002910 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003080 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003100 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003180 Nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D CL55_00008910 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CL55_00008920 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D CL55_00008930 putative pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D CL55_00017190 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
C 00620 Pyruvate metabolism [PATH:pdq00620]
D CL55_00007020 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CL55_00011480 pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CL55_00011470 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00017980 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CL55_00009770 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CL55_00002150 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CL55_00002140 acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CL55_00011080 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CL55_00012720 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D CL55_00010200 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D CL55_00010760 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D CL55_00007800 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CL55_00003410 Zn-dependent hydrolase, including glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CL55_00015380 Lactate dehydrogenase and related dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D CL55_00002290 Malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D CL55_00011260 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CL55_00007010 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D CL55_00014480 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CL55_00014460 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CL55_00014510 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CL55_00014500 Succinate dehydrogenase, hydrophobic anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D CL55_00014490 succinate dehydrogenase, cytochrome b556 subunit K00247 frdD; succinate dehydrogenase subunit D
D CL55_00020550 Phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D CL55_00013920 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CL55_00011780 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CL55_00007470 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pdq00630]
D CL55_00014700 isocitrate lyase/isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D CL55_00007020 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CL55_00011780 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D CL55_00011260 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CL55_00011190 citrate synthase I (hexameric type) K01647 CS; citrate synthase [EC:2.3.3.1]
D CL55_00010470 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CL55_00010300 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D CL55_00010190 acetyl-CoA carboxylase, biotin carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D CL55_00010180 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D CL55_00010160 methylmalonyl-CoA mutase C-terminal domain/methylmalonyl-CoA mutase N-terminal domain K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CL55_00017660 FAD/FMN-containing dehydrogenase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D CL55_00017670 FAD/FMN-containing dehydrogenase K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D CL55_00017680 Fe-S oxidoreductase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D CL55_00015380 Lactate dehydrogenase and related dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D CL55_00015310 HAD-superfamily hydrolase, subfamily IIIA K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CL55_00005170 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D CL55_00002890 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00000260 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CL55_00010570 glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47]
D CL55_00010580 hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D CL55_00010590 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D CL55_00018740 Putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CL55_00014470 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
D CL55_00012280 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D CL55_00007080 formate dehydrogenase, alpha subunit, archaeal-type K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CL55_00013060 Anaerobic dehydrogenase, typically selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CL55_00007070 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D CL55_00013050 Fe-S-cluster-containing hydrogenase components 1 K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CL55_00013030 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CL55_00006910 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D CL55_00005500 oxalyl-CoA decarboxylase K01577 oxc; oxalyl-CoA decarboxylase [EC:4.1.1.8]
C 00640 Propanoate metabolism [PATH:pdq00640]
D CL55_00007020 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CL55_00007820 propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00019680 putative quinone oxidoreductase, YhdH/YhfP family K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00009770 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CL55_00002150 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CL55_00002140 acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CL55_00011080 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CL55_00005400 Malonyl-CoA decarboxylase (MCD) K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D CL55_00006820 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D CL55_00010190 acetyl-CoA carboxylase, biotin carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D CL55_00010180 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D CL55_00010160 methylmalonyl-CoA mutase C-terminal domain/methylmalonyl-CoA mutase N-terminal domain K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CL55_00018100 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CL55_00018090 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CL55_00007710 methylmalonic acid semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D CL55_00010470 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:pdq00650]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CL55_00016080 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00011320 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00006320 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00010290 poly(R)-hydroxyalkanoic acid synthase, class I K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D CL55_00014640 polyhydroxyalkanoate depolymerase, intracellular K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D CL55_00010300 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D CL55_00012280 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D CL55_00011220 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CL55_00011210 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CL55_00011240 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CL55_00011230 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D CL55_00014460 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CL55_00014510 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CL55_00014500 Succinate dehydrogenase, hydrophobic anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D CL55_00014490 succinate dehydrogenase, cytochrome b556 subunit K00247 frdD; succinate dehydrogenase subunit D
D CL55_00016710 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00002730 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00016890 Isopropylmalate/homocitrate/citramalate synthase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D CL55_00009260 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D CL55_00009270 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D CL55_00012810 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D CL55_00007420 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CL55_00008950 Thiamine pyrophosphate-requiring enzymes (acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CL55_00007430 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:pdq00660]
D CL55_00007420 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CL55_00008950 Thiamine pyrophosphate-requiring enzymes (acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CL55_00007430 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CL55_00012960 putative acyl-CoA transferases/carnitine dehydratase K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]
D CL55_00018100 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CL55_00018090 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CL55_00016630 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CL55_00011180 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CL55_00016620 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CL55_00011160 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CL55_00011150 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pdq00562]
D CL55_00009710 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D CL55_00007710 methylmalonic acid semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D CL55_00007530 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pdq00190]
D CL55_00007550 NADH:ubiquinone oxidoreductase subunit 3 (chain A) K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D CL55_00007560 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D CL55_00007570 NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D CL55_00007580 NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D CL55_00007590 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D CL55_00007600 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CL55_00007610 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D CL55_00007620 NADH:ubiquinone oxidoreductase subunit 1 (chain H) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D CL55_00007630 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D CL55_00007640 NADH:ubiquinone oxidoreductase subunit 6 (chain J) K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D CL55_00007650 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D CL55_00007660 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D CL55_00007670 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D CL55_00007680 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D CL55_00011220 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CL55_00011210 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CL55_00011240 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CL55_00011230 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D CL55_00014460 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CL55_00014510 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CL55_00014500 Succinate dehydrogenase, hydrophobic anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D CL55_00014490 succinate dehydrogenase, cytochrome b556 subunit K00247 frdD; succinate dehydrogenase subunit D
D CL55_00001220 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CL55_00001230 Cytochrome b subunit of the bc complex K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CL55_00001250 Cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CL55_00019160 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CL55_00019210 Heme/copper-type cytochrome/quinol oxidase, subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D CL55_00019240 cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D CL55_00019250 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D CL55_00019230 Cytochrome oxidase assembly factor K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D CL55_00019170 Uncharacterized protein required for cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D CL55_00016260 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CL55_00016250 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CL55_00016240 Cbb3-type cytochrome oxidase, subunit 3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CL55_00016230 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CL55_00000340 Cytochrome c551/c552 K08738 CYC; cytochrome c
D CL55_00000200 proton translocating ATP synthase, F1 alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CL55_00000220 ATP synthase, F1 beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CL55_00000210 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CL55_00000190 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CL55_00000230 ATP synthase, F1 epsilon subunit (delta in mitochondria) K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CL55_00000160 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CL55_00000180 ATP synthase, F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CL55_00000170 ATP synthase, F0 subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CL55_00005960 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D CL55_00008140 polyphosphate kinase 2, PA0141 family K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CL55_00009160 polyphosphate kinase 2, PA0141 family K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:pdq00680]
D CL55_00007080 formate dehydrogenase, alpha subunit, archaeal-type K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CL55_00013060 Anaerobic dehydrogenase, typically selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CL55_00007070 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D CL55_00013050 Fe-S-cluster-containing hydrogenase components 1 K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CL55_00013030 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CL55_00002890 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CL55_00005170 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D CL55_00018740 Putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CL55_00010500 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CL55_00011260 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CL55_00017970 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CL55_00005770 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CL55_00013230 Coenzyme F420-reducing hydrogenase, beta subunit K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1]
D CL55_00007020 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CL55_00013920 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CL55_00019330 phosphoglycerate mutase, BPG-dependent K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CL55_00020240 Fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CL55_00015850 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CL55_00010340 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:pdq00910]
D CL55_00000920 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CL55_00000930 glutamate synthase, NADH/NADPH, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CL55_00020150 Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D CL55_00004530 Carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:pdq00920]
D CL55_00010930 diheme cytochrome SoxA (sulfur oxidation) K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D CL55_00006900 hypothetical protein K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D CL55_00010920 Cytochrome c K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D CL55_00006870 hypothetical protein K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D CL55_00010950 putative secreted protein K17226 soxY; sulfur-oxidizing protein SoxY
D CL55_00006880 putative secreted protein K17226 soxY; sulfur-oxidizing protein SoxY
D CL55_00010940 sulfur oxidation protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ
D CL55_00006890 sulfur oxidation protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ
D CL55_00010910 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterase K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20]
D CL55_00010970 Sulfite oxidase-related enzyme K17225 soxC; sulfane dehydrogenase subunit SoxC
D CL55_00010960 Cytochrome c551/c552 K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6]
D CL55_00003530 Sulfite reductase, beta subunit (hemoprotein) K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D CL55_00006360 putative NAD(FAD)-dependent dehydrogenase K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3]
D CL55_00006370 Cytochrome c553 K17230 fccA; cytochrome subunit of sulfide dehydrogenase
D CL55_00017030 Rhodanese-related sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CL55_00009690 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CL55_00019960 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D CL55_00011030 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D CL55_00015660 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D CL55_00015630 Acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pdq00061]
D CL55_00009770 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CL55_00002150 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CL55_00002140 acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CL55_00011080 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CL55_00015210 acyl carrier protein K02078 acpP; acyl carrier protein
D CL55_00015230 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CL55_00003420 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CL55_00015240 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CL55_00015200 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CL55_00003400 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00003430 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00016720 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00007360 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00002190 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00015220 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00013980 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CL55_00006460 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CL55_00016800 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009890 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009900 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:pdq00071]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00012950 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D CL55_00010810 Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D CL55_00016800 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009890 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009900 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00012780 NAD(P)H-nitrite reductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:pdq00561]
D CL55_00018740 Putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CL55_00015250 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CL55_00003020 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CL55_00018510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CL55_00008130 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CL55_00008100 Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CL55_00008110 Glycosyltransferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
C 00564 Glycerophospholipid metabolism [PATH:pdq00564]
D CL55_00019290 Glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CL55_00004990 Fe-S oxidoreductase K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D CL55_00003020 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CL55_00018510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CL55_00008130 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CL55_00008100 Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CL55_00014040 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CL55_00007460 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CL55_00007450 phosphatidylserine decarboxylase precursor-related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CL55_00008750 phosphatidylserine decarboxylase precursor K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CL55_00002270 Phosphatidylglycerophosphatase A-related protein K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D CL55_00012970 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-related enzyme K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D CL55_00015070 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:pdq01040]
D CL55_00017260 Fatty-acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D CL55_00010430 Lysophospholipase L1 and related esterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pdq00230]
D CL55_00007690 NTP pyrophosphohydrolase including oxidative damage repair enzyme K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CL55_00007120 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CL55_00019050 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CL55_00011040 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CL55_00005320 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CL55_00017280 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CL55_00010450 phosphoribosylformylglycinamidine synthase, single chain form K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D CL55_00017460 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CL55_00017940 phosphoribosylaminoimidazole carboxylase, PurK protein K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D CL55_00017950 phosphoribosylaminoimidazole carboxylase, PurE protein K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CL55_00017960 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CL55_00017790 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CL55_00018620 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CL55_00009870 Adenine/guanine phosphoribosyltransferase-related PRPP-binding protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CL55_00018860 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D CL55_00011980 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CL55_00017380 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CL55_00010280 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CL55_00013880 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CL55_00011910 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CL55_00007250 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CL55_00013870 GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CL55_00007280 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CL55_00002090 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CL55_00002100 Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CL55_00007300 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CL55_00012160 Guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CL55_00008080 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CL55_00009290 Guanosine polyphosphate pyrophosphohydrolase/synthetase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D CL55_00011790 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CL55_00002120 Sugar kinase, ribokinase family K00856 ADK; adenosine kinase [EC:2.7.1.20]
D CL55_00002920 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CL55_00002450 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D CL55_00018280 gamma-glutamyltranspeptidase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
C 00240 Pyrimidine metabolism [PATH:pdq00240]
D CL55_00007840 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CL55_00007830 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CL55_00002510 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CL55_00018730 dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CL55_00011410 dihydroorotate dehydrogenase, subfamily 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D CL55_00019920 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CL55_00002240 orotidine 5'-phosphate decarboxylase, subfamily 2 K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CL55_00014070 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CL55_00011910 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CL55_00005270 MAF protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CL55_00010480 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CL55_00015800 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D CL55_00018860 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D CL55_00011980 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CL55_00017380 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CL55_00002500 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CL55_00005590 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D CL55_00002090 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CL55_00002100 Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CL55_00010660 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CL55_00017330 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CL55_00015460 thymidylate synthase/thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CL55_00003840 Short-chain alcohol dehydrogenase of unknown specificity K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pdq00250]
D CL55_00007090 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CL55_00015040 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CL55_00014880 Aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CL55_00005170 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D CL55_00005740 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D CL55_00017390 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CL55_00005630 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CL55_00011790 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CL55_00017790 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CL55_00002510 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CL55_00016710 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00002730 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00000920 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CL55_00000930 glutamate synthase, NADH/NADPH, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CL55_00007840 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CL55_00007830 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CL55_00019760 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CL55_00011040 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pdq00260]
D CL55_00009790 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CL55_00011140 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CL55_00014870 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CL55_00017080 homoserine kinase, Neisseria type K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D CL55_00014860 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CL55_00002890 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CL55_00005170 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D CL55_00015380 Lactate dehydrogenase and related dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D CL55_00018740 Putative glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CL55_00019330 phosphoglycerate mutase, BPG-dependent K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CL55_00020240 Fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CL55_00015850 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CL55_00010340 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D CL55_00003840 Short-chain alcohol dehydrogenase of unknown specificity K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00000260 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CL55_00007460 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CL55_00018850 threonine ammonia-lyase, biosynthetic, long form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CL55_00011090 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CL55_00011100 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pdq00270]
D CL55_00009690 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CL55_00019640 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CL55_00019650 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CL55_00019880 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CL55_00010460 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D CL55_00004790 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D CL55_00009880 Nucleoside phosphorylase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D CL55_00010280 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CL55_00014630 Aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D CL55_00019870 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D CL55_00009790 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CL55_00011140 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CL55_00014870 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CL55_00019960 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D CL55_00011030 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D CL55_00018000 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CL55_00019400 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D CL55_00019390 glutathione synthetase, prokaryotic K01920 gshB; glutathione synthase [EC:6.3.2.3]
D CL55_00017030 Rhodanese-related sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CL55_00011260 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CL55_00014430 Malate/L-lactate dehydrogenase K16844 comC; (2R)-3-sulfolactate dehydrogenase (NADP+) [EC:1.1.1.338]
D CL55_00014420 Altronate dehydratase K16845 suyA; (2R)-sulfolactate sulfo-lyase subunit alpha [EC:4.4.1.24]
D CL55_00014410 Altronate dehydratase K16846 suyB; (2R)-sulfolactate sulfo-lyase subunit beta [EC:4.4.1.24]
D CL55_00015690 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D CL55_00015850 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:pdq00280]
D CL55_00018000 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00012950 Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00010190 acetyl-CoA carboxylase, biotin carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D CL55_00010180 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D CL55_00010160 methylmalonyl-CoA mutase C-terminal domain/methylmalonyl-CoA mutase N-terminal domain K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CL55_00012560 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D CL55_00007710 methylmalonic acid semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D CL55_00005420 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-]
D CL55_00006820 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D CL55_00016890 Isopropylmalate/homocitrate/citramalate synthase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D CL55_00009260 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D CL55_00009270 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pdq00290]
D CL55_00018850 threonine ammonia-lyase, biosynthetic, long form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CL55_00016630 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CL55_00011180 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CL55_00016620 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CL55_00011160 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CL55_00011150 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D CL55_00007420 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CL55_00008950 Thiamine pyrophosphate-requiring enzymes (acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CL55_00007430 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CL55_00007440 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CL55_00005910 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CL55_00018000 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CL55_00014880 Aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CL55_00007470 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pdq00300]
D CL55_00014870 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CL55_00009790 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CL55_00011140 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CL55_00009640 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CL55_00016100 Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CL55_00002360 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CL55_00014160 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CL55_00017200 Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CL55_00014170 succinyl-diaminopimelate desuccinylase, proteobacterial clade K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CL55_00019910 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CL55_00000830 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CL55_00001630 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CL55_00001640 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:pdq00310]
D CL55_00009580 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00010810 Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CL55_00016710 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00002730 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00010050 putative acyl-CoA transferases/carnitine dehydratase K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
C 00220 Arginine biosynthesis [PATH:pdq00220]
D CL55_00017400 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CL55_00017390 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CL55_00005630 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CL55_00007840 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CL55_00007830 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CL55_00014880 Aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CL55_00011650 amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D CL55_00001830 glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D CL55_00019980 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D CL55_00018690 N-acetyl-gamma-glutamyl-phosphate reductase, common form K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D CL55_00017200 Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:pdq00330]
D CL55_00005600 Arginine/lysine/ornithine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D CL55_00010460 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D CL55_00004790 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D CL55_00017700 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CL55_00002020 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CL55_00002400 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00340 Histidine metabolism [PATH:pdq00340]
D CL55_00001040 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CL55_00011800 ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D CL55_00001120 phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D CL55_00001110 Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D CL55_00001090 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D CL55_00001080 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CL55_00001100 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CL55_00001070 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D CL55_00001060 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00015830 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00001050 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D CL55_00005030 putative methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:pdq00350]
D CL55_00001060 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00015830 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00014630 Aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D CL55_00016710 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00002730 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00012440 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:pdq00360]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00016080 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00011320 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00006320 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00001060 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00015830 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00014630 Aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00380 Tryptophan metabolism [PATH:pdq00380]
D CL55_00009580 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00010810 Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pdq00400]
D CL55_00017640 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CL55_00000860 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CL55_00002160 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CL55_00002220 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D CL55_00000870 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CL55_00015810 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CL55_00009230 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CL55_00001480 anthranilate synthase component I, non-proteobacterial lineages K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CL55_00001470 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D CL55_00001460 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D CL55_00011110 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D CL55_00001450 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D CL55_00011090 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CL55_00011100 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D CL55_00015840 chorismate mutase domain of proteobacterial P-protein, clade 2 K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D CL55_00015820 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CL55_00001060 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00015830 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00014630 Aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pdq00410]
D CL55_00005540 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CL55_00006820 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00005400 Malonyl-CoA decarboxylase (MCD) K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D CL55_00007710 methylmalonic acid semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:pdq00430]
D CL55_00006800 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D CL55_00005740 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pdq00450]
D CL55_00019640 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CL55_00019650 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CL55_00005990 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CL55_00015450 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CL55_00005040 selenium donor protein K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CL55_00005570 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pdq00460]
D CL55_00006800 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D CL55_00015040 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CL55_00002890 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pdq00470]
D CL55_00010250 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CL55_00001700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CL55_00007000 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CL55_00001660 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CL55_00019910 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CL55_00000830 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:pdq00480]
D CL55_00006800 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D CL55_00019400 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D CL55_00019390 glutathione synthetase, prokaryotic K01920 gshB; glutathione synthase [EC:6.3.2.3]
D CL55_00005370 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CL55_00005760 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D CL55_00017800 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CL55_00019710 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CL55_00004970 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CL55_00003770 isocitrate dehydrogenase, NADP-dependent, monomeric type K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CL55_00006100 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D CL55_00019550 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D CL55_00001740 Peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D CL55_00010460 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D CL55_00004790 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
D CL55_00007740 putative O-linked N-acetylglucosamine transferase, SPINDLY family K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D CL55_00004730 putative O-linked N-acetylglucosamine transferase, SPINDLY family K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:pdq00540]
D CL55_00013970 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CL55_00001750 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CL55_00013990 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CL55_00009720 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CL55_00013960 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CL55_00002950 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CL55_00018920 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CL55_00010490 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CL55_00018930 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CL55_00002930 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CL55_00017780 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CL55_00019890 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CL55_00019900 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CL55_00020160 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CL55_00020330 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CL55_00020130 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D CL55_00000320 Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CL55_00015750 rfaE bifunctional protein, domain I K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D CL55_00018500 histidinol-phosphate phosphatase family domain/HAD-superfamily hydrolase, subfamily IIIA K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CL55_00019540 cytidyltransferase-related domain K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D CL55_00015740 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D CL55_00002660 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CL55_00018020 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CL55_00005220 ADP-heptose:LPS heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CL55_00002720 ADP-heptose:LPS heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CL55_00002590 Lipid A core - O-antigen ligase-related enzyme K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pdq00541]
D CL55_00017120 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CL55_00002570 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CL55_00015760 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CL55_00002640 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CL55_00002620 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CL55_00002650 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CL55_00003330 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D CL55_00002630 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D CL55_00008910 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CL55_00008920 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D CL55_00008930 putative pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D CL55_00017190 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D CL55_00003090 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D CL55_00002910 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003080 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003100 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CL55_00003180 Nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D CL55_00019770 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CL55_00003250 putative nucleoside-diphosphate sugar epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CL55_00003260 NAD dependent epimerase/dehydratase family K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367]
D CL55_00003320 UDP-N-acetylglucosamine 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
C 00550 Peptidoglycan biosynthesis [PATH:pdq00550]
D CL55_00001030 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CL55_00002990 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CL55_00001690 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CL55_00001660 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CL55_00001630 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CL55_00001700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CL55_00001640 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CL55_00014050 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CL55_00002680 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CL55_00001650 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CL55_00001680 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CL55_00002230 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CL55_00000900 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CL55_00020090 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CL55_00001620 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CL55_00017920 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:pdq00552]
D CL55_00002680 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:pdq00543]
D CL55_00020430 Glycosyltransferase, probably involved in cell wall biogenesis K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D CL55_00009690 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pdq00730]
D CL55_00010010 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D CL55_00009960 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CL55_00014600 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CL55_00010000 Glycine/D-amino acid oxidases (deaminating) K03153 thiO; glycine oxidase [EC:1.4.3.19]
D CL55_00016990 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CL55_00013240 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CL55_00009980 putative enzyme of thiazole biosynthesis K03149 thiG; thiazole synthase [EC:2.8.1.10]
D CL55_00009970 Thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CL55_00002280 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D CL55_00015540 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CL55_00008040 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CL55_00002920 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:pdq00740]
D CL55_00002760 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CL55_00002800 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CL55_00002750 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CL55_00002810 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CL55_00017290 riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CL55_00007690 NTP pyrophosphohydrolase including oxidative damage repair enzyme K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:pdq00750]
D CL55_00005710 pyridoxamine-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D CL55_00015850 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CL55_00018530 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D CL55_00015130 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D CL55_00014860 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pdq00760]
D CL55_00007090 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CL55_00007110 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D CL55_00007100 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D CL55_00018860 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D CL55_00011980 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CL55_00005300 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CL55_00005950 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D CL55_00002260 competence/damage-inducible protein CinA C-terminal domain K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D CL55_00017580 putative sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D CL55_00017820 NAD/NADP transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D CL55_00017830 NAD(P)+ transhydrogenase (Re/Si-specific) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D CL55_00017840 NAD/NADP transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D CL55_00016710 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CL55_00002730 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:pdq00770]
D CL55_00007420 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CL55_00008950 Thiamine pyrophosphate-requiring enzymes (acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CL55_00007430 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CL55_00007440 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CL55_00005910 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CL55_00017520 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CL55_00018310 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D CL55_00001950 Ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D CL55_00015430 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D CL55_00005540 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CL55_00019530 pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D CL55_00017320 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CL55_00019090 pantetheine-phosphate adenylyltransferase, bacterial K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CL55_00001870 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CL55_00015120 phosphopantetheine--protein transferase domain K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CL55_00018000 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:pdq00780]
D CL55_00019260 Methylase involved in ubiquinone/menaquinone biosynthesis K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D CL55_00015200 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CL55_00003400 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00003430 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00016720 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00007360 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00002190 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00015220 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00013980 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CL55_00006460 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CL55_00001550 7-keto-8-aminopelargonate synthetase-related enzyme K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CL55_00001560 adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CL55_00001540 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D CL55_00001570 biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CL55_00019520 birA, biotin-[acetyl-CoA-carboxylase] ligase region K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:pdq00785]
D CL55_00019470 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D CL55_00019460 lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011480 pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CL55_00011470 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CL55_00009570 2-oxoglutarate dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D CL55_00009580 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D CL55_00000260 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pdq00790]
D CL55_00003040 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CL55_00006090 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CL55_00016980 TIGR00294 family protein K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D CL55_00008040 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CL55_00018760 NTP pyrophosphohydrolase including oxidative damage repair enzyme K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D CL55_00019790 Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D CL55_00017510 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D CL55_00007900 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CL55_00015470 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D CL55_00011070 folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CL55_00002760 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CL55_00011370 Anthranilate/para-aminobenzoate synthases component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D CL55_00013730 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CL55_00003870 Pterin-4a-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D CL55_00013740 Organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CL55_00002820 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CL55_00018870 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CL55_00015340 molybdenum cofactor biosynthesis protein A, bacterial K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CL55_00018060 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CL55_00014830 Molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CL55_00015510 molybdenum cofactor synthesis domain K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CL55_00014850 Molybdopterin biosynthesis enzyme K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CL55_00015360 molybdenum cofactor synthesis domain K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CL55_00010090 putative MobA-related protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D CL55_00015350 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:pdq00670]
D CL55_00015470 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D CL55_00011510 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CL55_00002890 Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CL55_00017280 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CL55_00018620 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CL55_00005530 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CL55_00020500 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CL55_00014930 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CL55_00014230 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CL55_00019640 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CL55_00019650 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CL55_00015460 thymidylate synthase/thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CL55_00006910 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D CL55_00019860 5,10-methylenetetrahydrofolate reductase, prokaryotic form K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D CL55_00019850 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pdq00860]
D CL55_00010530 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CL55_00013250 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D CL55_00001340 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D CL55_00008670 Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CL55_00008760 Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CL55_00002440 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CL55_00000800 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CL55_00005640 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CL55_00005650 Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D CL55_00000240 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CL55_00005310 Coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D CL55_00002410 putative membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D CL55_00017560 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D CL55_00003510 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D CL55_00019160 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CL55_00019170 Uncharacterized protein required for cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D CL55_00003500 hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D CL55_00017650 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D CL55_00015550 Cobalamin biosynthesis protein CobD/CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D CL55_00013400 magnesium chelatase, H subunit K03403 chlH; magnesium chelatase subunit H [EC:6.6.1.1]
D CL55_00013660 Mg-chelatase subunit ChlD K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
D CL55_00013670 magnesium chelatase ATPase subunit I K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D CL55_00013380 magnesium protoporphyrin O-methyltransferase K03428 bchM; magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11]
D CL55_00013320 magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase K04035 E1.14.13.81; magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81]
D CL55_00013390 light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein K04037 chlL; light-independent protochlorophyllide reductase subunit L [EC:1.3.7.7]
D CL55_00013420 light-independent protochlorophyllide reductase, N subunit K04038 chlN; light-independent protochlorophyllide reductase subunit N [EC:1.3.7.7]
D CL55_00013410 light-independent protochlorophyllide reductase, B subunit K04039 chlB; light-independent protochlorophyllide reductase subunit B [EC:1.3.7.7]
D CL55_00013290 bacteriochlorophyll/chlorophyll synthetase K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133]
D CL55_00013590 chlorophyllide reductase iron protein subunit X K11333 bchX; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit X [EC:1.3.7.14 1.3.7.15]
D CL55_00013580 chlorophyllide reductase subunit Y K11334 bchY; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit Y [EC:1.3.7.14 1.3.7.15]
D CL55_00013570 chlorophyllide reductase subunit Z K11335 bchZ; 3,8-divinyl chlorophyllide a/chlorophyllide a reductase subunit Z [EC:1.3.7.14 1.3.7.15]
D CL55_00013430 2-vinyl bacteriochlorophyllide hydratase K11336 bchF; 3-vinyl bacteriochlorophyllide hydratase [EC:4.2.1.165]
D CL55_00013600 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase K11337 bchC; bacteriochlorophyllide a dehydrogenase [EC:1.1.1.396]
D CL55_00013270 geranylgeranyl reductase/geranylgeranyl reductase family K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pdq00130]
D CL55_00005660 4-hydroxybenzoate synthetase (chorismate lyase) K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D CL55_00017710 4-hydroxybenzoate polyprenyl transferase, proteobacterial K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D CL55_00001410 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D CL55_00015880 ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D CL55_00018590 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D CL55_00018820 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D CL55_00001580 Ubiquinone biosynthesis protein COQ7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D CL55_00008390 Ubiquinone biosynthesis protein COQ7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D CL55_00009200 NAD(P)H:quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pdq00900]
D CL55_00016990 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CL55_00013240 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CL55_00014030 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CL55_00010360 4-diphosphocytidyl-2-methyl-D-erithritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D CL55_00019040 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CL55_00010370 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D CL55_00011890 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CL55_00017210 (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D CL55_00013300 (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CL55_00017000 Geranylgeranyl pyrophosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D CL55_00013630 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CL55_00001980 Geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CL55_00014050 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CL55_00013270 geranylgeranyl reductase/geranylgeranyl reductase family K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]
D CL55_00015530 Zn-dependent protease with chaperone function K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:pdq00906]
D CL55_00013490 Phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D CL55_00013500 phytoene desaturase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
D CL55_00013480 putative secreted hydrolase K09844 crtC; carotenoid 1,2-hydratase [EC:4.2.1.131]
D CL55_00013470 phytoene desaturase K09845 crtD; 1-hydroxycarotenoid 3,4-desaturase [EC:1.3.99.27]
D CL55_00013610 O-methyltransferase K09846 crtF; demethylspheroidene O-methyltransferase [EC:2.1.1.210]
D CL55_00001930 Phytoene/squalene synthetase K10208 crtM; 4,4'-diapophytoene synthase [EC:2.5.1.96]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:pdq00907]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00016890 Isopropylmalate/homocitrate/citramalate synthase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CL55_00002320 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:pdq00523]
D CL55_00002640 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CL55_00002620 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CL55_00002650 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CL55_00003330 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D CL55_00002630 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D CL55_00002620 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D CL55_00006940 Protein related to penicillin acylase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:pdq00332]
D CL55_00002020 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CL55_00002400 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:pdq00261]
D CL55_00009790 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CL55_00011140 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CL55_00009640 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CL55_00016100 Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CL55_00002360 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pdq00521]
D CL55_00007120 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CL55_00009710 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D CL55_00002640 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CL55_00002620 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CL55_00002650 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CL55_00003330 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D CL55_00002630 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:pdq00525]
D CL55_00002640 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CL55_00002620 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:pdq00401]
D CL55_00015820 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CL55_00001060 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00015830 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00014630 Aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CL55_00001480 anthranilate synthase component I, non-proteobacterial lineages K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CL55_00001470 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D CL55_00015230 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CL55_00003400 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00003430 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00016720 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00007360 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00002190 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00015220 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00006460 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CL55_00015210 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:pdq00999]
D CL55_00019880 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CL55_00002220 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:pdq00362]
D CL55_00003580 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D CL55_00011720 4-oxalocrotonate tautomerase-like protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CL55_00009140 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D CL55_00003560 putative metal-dependent hydrolase of the TIM-barrel fold K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D CL55_00010810 Acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D CL55_00016080 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00011320 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00006320 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:pdq00627]
D CL55_00003560 putative metal-dependent hydrolase of the TIM-barrel fold K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:pdq00364]
D CL55_00017050 Dienelactone hydrolase-related enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D CL55_00011750 Dienelactone hydrolase-related enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:pdq00625]
D CL55_00016640 putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily) K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D CL55_00004000 2-haloalkanoic acid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D CL55_00020300 2-haloalkanoic acid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:pdq00361]
D CL55_00017050 Dienelactone hydrolase-related enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D CL55_00011750 Dienelactone hydrolase-related enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D CL55_00004000 2-haloalkanoic acid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D CL55_00020300 2-haloalkanoic acid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D CL55_00016640 putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily) K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
C 00623 Toluene degradation [PATH:pdq00623]
D CL55_00017050 Dienelactone hydrolase-related enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D CL55_00011750 Dienelactone hydrolase-related enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D CL55_00011720 4-oxalocrotonate tautomerase-like protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:pdq00633]
D CL55_00012750 NADH:flavin oxidoreductase, Old Yellow Enzyme family K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
D CL55_00001520 Enoyl-CoA hydratase/carnithine racemase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D CL55_00011720 4-oxalocrotonate tautomerase-like protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation [PATH:pdq00365]
D CL55_00008540 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K16876 hmfD; 2-furoate---CoA ligase [EC:6.2.1.31]
D CL55_00008510 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein K16877 hmfA; 2-furoyl-CoA dehydrogenase large subunit [EC:1.3.99.8]
D CL55_00008520 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein K16878 hmfB; 2-furoyl-CoA dehydrogenase FAD binding subunit [EC:1.3.99.8]
D CL55_00008530 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein K16879 hmfC; 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit [EC:1.3.99.8]
D CL55_00008550 Enoyl-CoA hydratase/carnithine racemase K16880 hmfE; 2-oxoglutaroyl-CoA hydrolase
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pdq03020]
D CL55_00000430 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CL55_00000440 DNA-directed RNA polymerase, beta' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CL55_00000760 DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CL55_00007290 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pdq03010]
D CL55_00015790 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CL55_00014090 ribosomal protein S2, bacterial type K02967 RP-S2; small subunit ribosomal protein S2
D CL55_00000560 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3
D CL55_00000750 ribosomal protein S4, bacterial/organelle type K02986 RP-S4; small subunit ribosomal protein S4
D CL55_00000670 ribosomal protein S5, bacterial/organelle type K02988 RP-S5; small subunit ribosomal protein S5
D CL55_00015030 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CL55_00000460 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7
D CL55_00000640 Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CL55_00018700 Ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CL55_00000490 ribosomal protein S10, bacterial/organelle K02946 RP-S10; small subunit ribosomal protein S10
D CL55_00000740 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CL55_00000450 ribosomal protein S12, bacterial/organelle K02950 RP-S12; small subunit ribosomal protein S12
D CL55_00000730 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CL55_00000630 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CL55_00007500 ribosomal protein S15, bacterial/organelle K02956 RP-S15; small subunit ribosomal protein S15
D CL55_00015600 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CL55_00000590 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CL55_00015010 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CL55_00000540 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19
D CL55_00017420 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CL55_00016960 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CL55_00000400 ribosomal protein L1, bacterial/chloroplast K02863 RP-L1; large subunit ribosomal protein L1
D CL55_00000530 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2
D CL55_00000500 50S ribosomal protein L3, bacterial K02906 RP-L3; large subunit ribosomal protein L3
D CL55_00000510 50S ribosomal protein L4, bacterial/organelle K02926 RP-L4; large subunit ribosomal protein L4
D CL55_00000620 Ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CL55_00000650 ribosomal protein L6, bacterial type K02933 RP-L6; large subunit ribosomal protein L6
D CL55_00000420 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CL55_00015000 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CL55_00000410 Ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CL55_00000390 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CL55_00018710 ribosomal protein L13, bacterial type K02871 RP-L13; large subunit ribosomal protein L13
D CL55_00000600 ribosomal protein L14, bacterial/organelle K02874 RP-L14; large subunit ribosomal protein L14
D CL55_00000690 ribosomal protein L15, bacterial/organelle K02876 RP-L15; large subunit ribosomal protein L15
D CL55_00000570 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16
D CL55_00000770 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CL55_00000660 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18
D CL55_00015570 ribosomal protein L19, bacterial type K02884 RP-L19; large subunit ribosomal protein L19
D CL55_00009350 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CL55_00001990 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CL55_00000550 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22
D CL55_00000520 Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CL55_00000610 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24
D CL55_00019060 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D CL55_00002000 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CL55_00017240 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CL55_00000580 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CL55_00000680 ribosomal protein L30, bacterial/organelle K02907 RP-L30; large subunit ribosomal protein L30
D CL55_00012350 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CL55_00015260 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CL55_00017250 ribosomal protein L33, bacterial type K02913 RP-L33; large subunit ribosomal protein L33
D CL55_00020590 Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CL55_00009340 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CL55_00000720 ribosomal protein L36, bacterial type K02919 RP-L36; large subunit ribosomal protein L36
D CL55_00020600 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CL55_00020610 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CL55_00020620 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pdq00970]
D CL55_00021000 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CL55_00020750 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CL55_00020730 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020910 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020970 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020880 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020920 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020960 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CL55_00021020 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CL55_00021050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CL55_00021090 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CL55_00021010 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CL55_00020770 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CL55_00021060 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CL55_00020840 tRNA-His K14226 tRNA-His; tRNA His
D CL55_00020740 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CL55_00020820 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00020890 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00021030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00020980 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00020850 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00020810 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CL55_00021040 tRNA-Met K14230 tRNA-Met; tRNA Met
D CL55_00021070 tRNA-Met K14230 tRNA-Met; tRNA Met
D CL55_00021080 tRNA-Met K14230 tRNA-Met; tRNA Met
D CL55_00021100 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CL55_00020900 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CL55_00020940 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CL55_00020950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CL55_00020860 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CL55_00020870 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CL55_00020830 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CL55_00020780 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CL55_00020800 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CL55_00020790 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CL55_00020760 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CL55_00020930 tRNA-Val K14237 tRNA-Val; tRNA Val
D CL55_00020990 tRNA-Val K14237 tRNA-Val; tRNA Val
D CL55_00010530 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CL55_00020040 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CL55_00020030 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CL55_00020050 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CL55_00017170 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CL55_00017140 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CL55_00018770 aspartyl-tRNA synthetase, bacterial type K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CL55_00018480 glycyl-tRNA synthetase, tetrameric type, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CL55_00018490 glycyl-tRNA synthetase, tetrameric type, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CL55_00009320 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CL55_00006020 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CL55_00009750 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CL55_00005570 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CL55_00005530 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CL55_00020500 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CL55_00014930 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CL55_00014230 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CL55_00017110 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CL55_00002370 leucyl-tRNA synthetase, eubacterial and mitochondrial family K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CL55_00017300 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CL55_00014330 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CL55_00019620 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CL55_00002050 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CL55_00011880 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CL55_00009360 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CL55_00009370 phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CL55_00018660 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CL55_00009620 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pdq03060]
D CL55_00000700 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CL55_00000370 preprotein translocase, SecE subunit, bacterial K03073 secE; preprotein translocase subunit SecE
D CL55_00007540 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CL55_00017760 protein-export membrane protein, SecD/SecF family/protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CL55_00017770 protein-export membrane protein, SecD/SecF family/protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CL55_00017750 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CL55_00020570 Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CL55_00001770 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CL55_00019300 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CL55_00002060 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CL55_00020700 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D CL55_00019130 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CL55_00001140 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D CL55_00001150 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D CL55_00001160 Twin arginine targeting (Tat) protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D CL55_00015170 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CL55_00017310 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pdq04122]
D CL55_00014600 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CL55_00017030 Rhodanese-related sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CL55_00017130 putative redox protein, regulator of disulfide bond formation K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D CL55_00017810 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CL55_00014830 Molybdopterin converting factor, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CL55_00015340 molybdenum cofactor biosynthesis protein A, bacterial K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CL55_00014840 molybdopterin converting factor, subunit 1, non-archaeal K03636 moaD; sulfur-carrier protein
D CL55_00019350 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D CL55_00018060 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CL55_00015510 molybdenum cofactor synthesis domain K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CL55_00009990 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:pdq03018]
D CL55_00002040 ADP-ribose pyrophosphatase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CL55_00015330 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D CL55_00010500 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CL55_00007510 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CL55_00012550 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CL55_00005190 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CL55_00011710 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CL55_00012340 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D CL55_00017540 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CL55_00017870 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CL55_00011840 RNA chaperone Hfq K03666 hfq; host factor-I protein
D CL55_00008140 polyphosphate kinase 2, PA0141 family K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CL55_00009160 polyphosphate kinase 2, PA0141 family K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CL55_00017500 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pdq03030]
D CL55_00018190 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00007750 DNA polymerase III, epsilon subunit, Proteobacterial K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00014730 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00005210 DNA-directed DNA polymerase III (polc) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CL55_00012060 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CL55_00010650 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CL55_00002390 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CL55_00005380 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CL55_00000020 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CL55_00014990 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CL55_00016940 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101]
D CL55_00018880 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D CL55_00007780 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CL55_00013950 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CL55_00017060 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CL55_00014130 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:pdq03410]
D CL55_00014660 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CL55_00001380 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CL55_00019010 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D CL55_00019020 formamidopyrimidine-DNA glycosylase (fpg) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CL55_00009760 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D CL55_00010230 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CL55_00011550 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CL55_00019930 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CL55_00017060 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CL55_00014310 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CL55_00014130 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:pdq03420]
D CL55_00010350 transcription-repair coupling factor (mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CL55_00018900 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D CL55_00014620 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D CL55_00015080 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D CL55_00017100 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CL55_00017060 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CL55_00014130 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:pdq03430]
D CL55_00017100 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CL55_00002980 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CL55_00017010 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CL55_00012230 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D CL55_00014310 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CL55_00018880 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D CL55_00005210 DNA-directed DNA polymerase III (polc) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CL55_00000020 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CL55_00012060 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CL55_00002390 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CL55_00010650 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CL55_00018190 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00007750 DNA polymerase III, epsilon subunit, Proteobacterial K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00014730 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00005380 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CL55_00014130 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:pdq03440]
D CL55_00014310 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CL55_00018880 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D CL55_00015140 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D CL55_00012040 recombination protein RecR K06187 recR; recombination protein RecR
D CL55_00018120 protein RecA K03553 recA; recombination protein RecA
D CL55_00017060 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CL55_00018640 Holliday junction DNA helicase, RuvA subunit K03550 ruvA; holliday junction DNA helicase RuvA
D CL55_00018650 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CL55_00018630 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CL55_00017720 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CL55_00005210 DNA-directed DNA polymerase III (polc) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CL55_00000020 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CL55_00012060 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CL55_00002390 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CL55_00010650 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CL55_00018190 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00007750 DNA polymerase III, epsilon subunit, Proteobacterial K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00014730 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00005380 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CL55_00000250 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CL55_00015020 restart primosome assembly protein PriB K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
D CL55_00007740 putative O-linked N-acetylglucosamine transferase, SPINDLY family K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D CL55_00004730 putative O-linked N-acetylglucosamine transferase, SPINDLY family K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:pdq03250]
D CL55_00011360 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pdq02010]
D CL55_00012480 ABC-type tungstate transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein
D CL55_00012490 ABC-type tungstate transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein
D CL55_00013000 ABC-type tungstate transport system, periplasmic component K05773 tupB; tungstate transport system permease protein
D CL55_00013010 ABC-type multidrug transport system, ATPase component K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CL55_00006640 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CL55_00010990 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CL55_00011000 ABC-type spermidine/putrescine transport systems, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CL55_00006130 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D CL55_00006120 ABC-type Fe3+ transport system, permease component K02011 afuB; iron(III) transport system permease protein
D CL55_00006110 ABC-type spermidine/putrescine transport systems, ATPase component K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CL55_00005070 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) K05845 opuC; osmoprotectant transport system substrate-binding protein
D CL55_00000980 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D CL55_00000960 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CL55_00007340 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CL55_00007320 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CL55_00000950 conserved hypothetical integral membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CL55_00000990 putative NTP binding protein (contains STAS domain) K07122 mlaB; phospholipid transport system transporter-binding protein
D CL55_00007330 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CL55_00000940 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CL55_00007920 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CL55_00007930 phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D CL55_00007940 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CL55_00007950 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CL55_00013830 phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D CL55_00013800 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D CL55_00013810 ABC-type phosphate/phosphonate transport system, permease component K02042 phnE; phosphonate transport system permease protein
D CL55_00013820 ABC-type phosphate/phosphonate transport system, ATPase component K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D CL55_00009100 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D CL55_00009120 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K10002 gltK; glutamate/aspartate transport system permease protein
D CL55_00009110 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K10003 gltJ; glutamate/aspartate transport system permease protein
D CL55_00009130 ABC-type polar amino acid transport system, ATPase component K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D CL55_00016810 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00012890 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00000080 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00008560 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00016840 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00012900 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00000090 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00008570 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00000100 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00008580 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00016850 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00012910 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00016820 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00012920 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00000060 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00008590 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00000070 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00008600 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00016830 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00012930 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00006470 ABC-type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein
D CL55_00006480 ABC-type uncharacterized transport system, permease component K13894 yejB; microcin C transport system permease protein
D CL55_00006490 ABC-type uncharacterized transport system, permease component K13895 yejE; microcin C transport system permease protein
D CL55_00006500 ABC-type uncharacterized transport system, duplicated ATPase component K13896 yejF; microcin C transport system ATP-binding protein
D CL55_00014290 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D CL55_00014280 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D CL55_00016380 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D CL55_00016390 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D CL55_00016400 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D CL55_00016410 heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D CL55_00005360 putative permease K07091 lptF; lipopolysaccharide export system permease protein
D CL55_00005350 putative permease K11720 lptG; lipopolysaccharide export system permease protein
D CL55_00018960 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CL55_00005250 lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CL55_00018750 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase component K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
C 02060 Phosphotransferase system (PTS) [PATH:pdq02060]
D CL55_00019360 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CL55_00019370 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D CL55_00019380 Phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D CL55_00018980 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:pdq03070]
D CL55_00002670 Outer membrane protein K12340 tolC; outer membrane protein
D CL55_00017760 protein-export membrane protein, SecD/SecF family/protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CL55_00017770 protein-export membrane protein, SecD/SecF family/protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CL55_00000370 preprotein translocase, SecE subunit, bacterial K03073 secE; preprotein translocase subunit SecE
D CL55_00007540 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CL55_00000700 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CL55_00017750 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CL55_00020570 Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CL55_00001770 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CL55_00019130 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CL55_00019300 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CL55_00002060 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CL55_00001140 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D CL55_00001150 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D CL55_00001160 Twin arginine targeting (Tat) protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pdq02020]
D CL55_00007980 phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CL55_00007970 phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D CL55_00008040 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CL55_00007920 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CL55_00015190 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107]
D CL55_00012000 RND family efflux transporter, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D CL55_00004300 Flagellin-related hook-associated protein K02406 fliC; flagellin
D CL55_00004250 RNA polymerase sigma factor, FliA/WhiG family/RNA polymerase sigma factor, sigma-70 family K02405 fliA; RNA polymerase sigma factor FliA
D CL55_00004660 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CL55_00017160 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein
D CL55_00005850 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein
D CL55_00005840 Tripartite tricarboxylate transporter TctB family K07794 tctB; putative tricarboxylic transport membrane protein
D CL55_00017150 Tripartite tricarboxylate transporter TctB family K07794 tctB; putative tricarboxylic transport membrane protein
D CL55_00005830 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D CL55_00012290 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D CL55_00019170 Uncharacterized protein required for cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D CL55_00000010 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CL55_00006420 Citrate lyase beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D CL55_00014460 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CL55_00014510 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CL55_00014500 Succinate dehydrogenase, hydrophobic anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D CL55_00014490 succinate dehydrogenase, cytochrome b556 subunit K00247 frdD; succinate dehydrogenase subunit D
D CL55_00017910 Signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CL55_00017900 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07690 evgA; two-component system, NarL family, response regulator EvgA
D CL55_00000290 Fatty acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D CL55_00014110 [Protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D CL55_00003980 Nitrogen regulatory protein PII K04751 glnB; nitrogen regulatory protein P-II 1
D CL55_00005940 Nitrogen regulatory protein PII K04751 glnB; nitrogen regulatory protein P-II 1
D CL55_00011570 Signal transduction histidine kinase, nitrogen specific K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D CL55_00011560 nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D CL55_00020470 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D CL55_00020460 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CL55_00004130 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CL55_00018070 prepilin-type N-terminal cleavage/methylation domain K02650 pilA; type IV pilus assembly protein PilA
D CL55_00004380 Signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D CL55_00004370 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC
D CL55_00009130 ABC-type polar amino acid transport system, ATPase component K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D CL55_00009120 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K10002 gltK; glutamate/aspartate transport system permease protein
D CL55_00009110 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K10003 gltJ; glutamate/aspartate transport system permease protein
D CL55_00009100 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D CL55_00013520 photosynthetic reaction center M subunit K08929 pufM; photosynthetic reaction center M subunit
D CL55_00013530 photosynthetic reaction center L subunit K08928 pufL; photosynthetic reaction center L subunit
D CL55_00013540 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D CL55_00013560 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
D CL55_00013360 photosynthetic reaction center, subunit H, bacterial K13991 puhA; photosynthetic reaction center H subunit
D CL55_00001220 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CL55_00001230 Cytochrome b subunit of the bc complex K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CL55_00001250 Cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CL55_00000340 Cytochrome c551/c552 K08738 CYC; cytochrome c
D CL55_00016260 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CL55_00016250 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CL55_00016240 Cbb3-type cytochrome oxidase, subunit 3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CL55_00016230 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CL55_00002670 Outer membrane protein K12340 tolC; outer membrane protein
D CL55_00004230 Anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D CL55_00001220 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pdq02024]
D CL55_00011840 RNA chaperone Hfq K03666 hfq; host factor-I protein
D CL55_00001480 anthranilate synthase component I, non-proteobacterial lineages K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CL55_00001470 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D CL55_00017640 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CL55_00016810 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00012890 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00000080 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00008560 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00016840 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00012900 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00000090 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00008570 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00000100 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00008580 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00016850 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00012910 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00016820 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00012920 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00000060 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00008590 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00000070 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00008600 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00016830 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00012930 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00016740 Zn-dependent hydrolase, including glyoxylase K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81]
D CL55_00016800 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009890 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009900 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00002800 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CL55_00020570 Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CL55_00000370 preprotein translocase, SecE subunit, bacterial K03073 secE; preprotein translocase subunit SecE
D CL55_00007540 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CL55_00000700 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CL55_00017750 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CL55_00001770 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CL55_00019130 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CL55_00019300 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CL55_00002060 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:pdq02030]
D CL55_00004400 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CL55_00004460 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CL55_00004470 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CL55_00004660 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CL55_00004670 Flagellar motor protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:pdq02040]
D CL55_00004360 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CL55_00004390 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) K02409 fliF; flagellar M-ring protein FliF
D CL55_00004400 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CL55_00004410 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D CL55_00004420 ATPase FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CL55_00004450 Flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D CL55_00004460 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CL55_00004470 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CL55_00004480 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CL55_00004490 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CL55_00004500 Flagellar biosynthesis pathway, component FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CL55_00004510 Flagellar biosynthesis pathway, component FliR K02421 fliR; flagellar biosynthesis protein FliR
D CL55_00004280 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CL55_00004710 Flagellar biosynthesis pathway, component FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CL55_00004220 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CL55_00004550 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CL55_00004560 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CL55_00004570 Flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CL55_00004580 flagellar hook-basal body protein/flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D CL55_00004590 flagellar hook-basal body protein K02391 flgF; flagellar basal-body rod protein FlgF
D CL55_00004600 flagellar basal-body rod protein FlgG, Gram-negative bacteria K02392 flgG; flagellar basal-body rod protein FlgG
D CL55_00004610 Flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D CL55_00004620 Flagellar basal-body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D CL55_00004630 Rod binding protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D CL55_00004640 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CL55_00004650 Flagellin-related hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D CL55_00004300 Flagellin-related hook-associated protein K02406 fliC; flagellin
D CL55_00004320 Flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D CL55_00004330 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CL55_00004660 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CL55_00004670 Flagellar motor protein K02557 motB; chemotaxis protein MotB
D CL55_00004230 Anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CL55_00016930 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
D CL55_00004130 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CL55_00004370 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC
D CL55_00004250 RNA polymerase sigma factor, FliA/WhiG family/RNA polymerase sigma factor, sigma-70 family K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CL55_00010500 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:pdq04980]
D CL55_00017650 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D CL55_00010170 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-]
D CL55_00010160 methylmalonyl-CoA mutase C-terminal domain/methylmalonyl-CoA mutase N-terminal domain K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CL55_00019640 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CL55_00019650 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:pdq01501]
D CL55_00019940 Major Facilitator Superfamily K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D CL55_00015110 Beta-glucosidase-related glycosidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CL55_00019730 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CL55_00019720 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D CL55_00002670 Outer membrane protein K12340 tolC; outer membrane protein
D CL55_00000900 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CL55_00020090 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CL55_00001620 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:pdq01502]
D CL55_00001700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CL55_00010250 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CL55_00001640 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CL55_00001650 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CL55_00001680 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pdq01503]
D CL55_00014920 Glycosyltransferases involved in cell wall biogenesis K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D CL55_00014950 putative xylanase/chitin deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D CL55_00005100 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CL55_00015190 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107]
D CL55_00019600 putative dithiol-disulfide isomerase involved in polyketide biosynthesis K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D CL55_00011360 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D CL55_00019730 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CL55_00019720 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D CL55_00002670 Outer membrane protein K12340 tolC; outer membrane protein
D CL55_00013970 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pdq01000]
C 01001 Protein kinases [BR:pdq01001]
D CL55_00007980 phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CL55_00017910 Signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CL55_00011570 Signal transduction histidine kinase, nitrogen specific K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D CL55_00020470 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D CL55_00004380 Signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:pdq01009]
D CL55_00019870 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D CL55_00018410 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D CL55_00010340 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:pdq01002]
D CL55_00017310 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CL55_00001880 Type II secretory pathway, prepilin signal peptidase PulO and related peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CL55_00013870 GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CL55_00011040 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CL55_00000920 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CL55_00019760 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CL55_00005760 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D CL55_00011520 Zn-dependent oligopeptidase K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D CL55_00019110 putative Zn-dependent peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D CL55_00019120 putative Zn-dependent peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D CL55_00005370 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CL55_00014170 succinyl-diaminopimelate desuccinylase, proteobacterial clade K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CL55_00014100 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CL55_00018580 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CL55_00007890 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CL55_00015530 Zn-dependent protease with chaperone function K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D CL55_00018050 Putative Zn-dependent protease, contains TPR repeats K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D CL55_00014020 putative membrane-associated Zn-dependent proteases 1 K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CL55_00015190 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107]
D CL55_00011430 D-alanyl-D-alanine carboxypeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D CL55_00017920 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D CL55_00010390 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CL55_00010410 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CL55_00015050 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D CL55_00012270 SOS-response transcriptional repressors (RecA-mediated autopeptidases) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D CL55_00015170 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CL55_00019340 C-terminal peptidase (prc) K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CL55_00006940 Protein related to penicillin acylase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D CL55_00015300 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-]
D CL55_00013710 putative protein-like protein of microcin C7 resistance protein MccF K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D CL55_00006800 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D CL55_00018280 gamma-glutamyltranspeptidase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
D CL55_00009930 Collagenase and related protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D CL55_00015500 putative Zn-dependent protease K03592 pmbA; PmbA protein
D CL55_00017630 putative Zn-dependent protease K03568 tldD; TldD protein
D CL55_00011810 HflC protein K04087 hflC; modulator of FtsH protease HflC
D CL55_00011820 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:pdq01003]
D CL55_00007740 putative O-linked N-acetylglucosamine transferase, SPINDLY family K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D CL55_00004730 putative O-linked N-acetylglucosamine transferase, SPINDLY family K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D CL55_00008110 Glycosyltransferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
D CL55_00002230 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CL55_00000900 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CL55_00020430 Glycosyltransferase, probably involved in cell wall biogenesis K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pdq01005]
D CL55_00013970 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CL55_00013960 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CL55_00001750 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CL55_00013990 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CL55_00009720 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CL55_00002950 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CL55_00019890 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CL55_00019900 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CL55_00020160 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CL55_00020330 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CL55_00020130 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D CL55_00017780 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CL55_00010490 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CL55_00002930 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CL55_00018930 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CL55_00018920 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CL55_00015750 rfaE bifunctional protein, domain I K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D CL55_00019540 cytidyltransferase-related domain K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D CL55_00002660 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CL55_00018020 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CL55_00002590 Lipid A core - O-antigen ligase-related enzyme K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D CL55_00005220 ADP-heptose:LPS heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CL55_00002720 ADP-heptose:LPS heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CL55_00000320 Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CL55_00018500 histidinol-phosphate phosphatase family domain/HAD-superfamily hydrolase, subfamily IIIA K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CL55_00015740 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D CL55_00003300 Sugar transferases involved in lipopolysaccharide synthesis K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pdq01011]
D CL55_00001030 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CL55_00002990 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CL55_00001690 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CL55_00001660 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CL55_00001630 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CL55_00001700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CL55_00010250 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CL55_00007000 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CL55_00013710 putative protein-like protein of microcin C7 resistance protein MccF K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D CL55_00001650 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CL55_00001680 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CL55_00002680 undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CL55_00017430 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D CL55_00000900 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CL55_00020090 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CL55_00001620 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CL55_00017920 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D CL55_00011430 D-alanyl-D-alanine carboxypeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D CL55_00002230 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CL55_00019840 Soluble lytic murein transglycosylase and related regulatory proteins (some containing LysM/invasin domains) K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CL55_00001510 Membrane-bound lytic murein transglycosylase K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D CL55_00015680 Membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D CL55_00007810 Soluble lytic murein transglycosylase and related regulatory proteins (some containing LysM/invasin domains) K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D CL55_00010670 conserved hypothetical protein, YceG family K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CL55_00005100 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CL55_00002080 Negative regulator of beta-lactamase expression K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:pdq01004]
D CL55_00015230 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CL55_00003420 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CL55_00015240 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CL55_00015200 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CL55_00003400 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00003430 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00016720 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00007360 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00002190 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00015220 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CL55_00013980 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CL55_00006460 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CL55_00010430 Lysophospholipase L1 and related esterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D CL55_00017260 Fatty-acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D CL55_00000290 Fatty acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D CL55_00007020 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D CL55_00007820 propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D CL55_00016800 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009890 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009900 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00015250 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CL55_00003020 acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CL55_00018510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CL55_00008130 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pdq01006]
D CL55_00017000 Geranylgeranyl pyrophosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D CL55_00013630 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CL55_00001980 Geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CL55_00014050 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CL55_00013490 Phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D CL55_00001930 Phytoene/squalene synthetase K10208 crtM; 4,4'-diapophytoene synthase [EC:2.5.1.96]
D CL55_00017450 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CL55_00017710 4-hydroxybenzoate polyprenyl transferase, proteobacterial K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D CL55_00019160 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CL55_00013290 bacteriochlorophyll/chlorophyll synthetase K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133]
C 01007 Amino acid related enzymes [BR:pdq01007]
D CL55_00010530 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CL55_00017170 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CL55_00005200 glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D CL55_00018660 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CL55_00009620 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CL55_00009750 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CL55_00019620 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CL55_00005570 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CL55_00017300 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CL55_00017110 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CL55_00002370 leucyl-tRNA synthetase, eubacterial and mitochondrial family K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CL55_00014330 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CL55_00018770 aspartyl-tRNA synthetase, bacterial type K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CL55_00011880 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CL55_00018480 glycyl-tRNA synthetase, tetrameric type, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CL55_00018490 glycyl-tRNA synthetase, tetrameric type, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CL55_00006020 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CL55_00002050 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CL55_00009320 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CL55_00017140 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CL55_00009360 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CL55_00009370 phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CL55_00014880 Aspartate/tyrosine/aromatic aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CL55_00014630 Aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D CL55_00011300 Aspartate/tyrosine/aromatic aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D CL55_00001060 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00015830 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CL55_00001550 7-keto-8-aminopelargonate synthetase-related enzyme K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CL55_00006820 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D CL55_00017200 Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CL55_00001560 adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CL55_00008670 Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CL55_00008760 Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CL55_00002440 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CL55_00018000 branched-chain amino acid aminotransferase, group I K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CL55_00011370 Anthranilate/para-aminobenzoate synthases component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D CL55_00005170 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D CL55_00015850 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:pdq00194]
D CL55_00000230 ATP synthase, F1 epsilon subunit (delta in mitochondria) K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CL55_00000220 ATP synthase, F1 beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CL55_00000210 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CL55_00000200 proton translocating ATP synthase, F1 alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CL55_00000190 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CL55_00000180 ATP synthase, F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CL55_00000170 ATP synthase, F0 subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CL55_00000160 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CL55_00000150 F0F1-type ATP synthase, subunit I K02116 atpI; ATP synthase protein I
D CL55_00013530 photosynthetic reaction center L subunit K08928 pufL; photosynthetic reaction center L subunit
D CL55_00013520 photosynthetic reaction center M subunit K08929 pufM; photosynthetic reaction center M subunit
D CL55_00013360 photosynthetic reaction center, subunit H, bacterial K13991 puhA; photosynthetic reaction center H subunit
D CL55_00013510 Photosynthetic reaction centre cytochrome C subunit K13992 pufC; photosynthetic reaction center cytochrome c subunit
D CL55_00013540 Antenna complex alpha/beta subunit K08926 pufA; light-harvesting complex 1 alpha chain
D CL55_00013560 Antenna complex alpha/beta subunit K08927 pufB; light-harvesting complex 1 beta chain
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pdq03000]
D CL55_00018340 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D CL55_00005010 Transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D CL55_00012760 Transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D CL55_00005340 Transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D CL55_00011250 Transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D CL55_00014400 Transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D CL55_00019970 Transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D CL55_00002340 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CL55_00016190 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CL55_00014610 Rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CL55_00014750 putative transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CL55_00006650 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CL55_00019520 birA, biotin-[acetyl-CoA-carboxylase] ligase region K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CL55_00018610 Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CL55_00005980 putative transcriptional regulator K07726 K07726; putative transcriptional regulator
D CL55_00010740 Stress-induced morphogen (activity unknown) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D CL55_00000140 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CL55_00017570 heat shock gene repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D CL55_00002500 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CL55_00002480 Putative transcriptional regulator K07735 algH; putative transcriptional regulator
D CL55_00019990 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D CL55_00002900 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D CL55_00001590 mraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:pdq03021]
D CL55_00000760 DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CL55_00000430 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CL55_00000440 DNA-directed RNA polymerase, beta' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CL55_00007290 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CL55_00016930 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
D CL55_00007410 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CL55_00019140 alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D CL55_00004130 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CL55_00004250 RNA polymerase sigma factor, FliA/WhiG family/RNA polymerase sigma factor, sigma-70 family K02405 fliA; RNA polymerase sigma factor FliA
D CL55_00006560 transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication K02600 nusA; transcription termination/antitermination protein NusA
D CL55_00002740 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D CL55_00000380 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D CL55_00001260 Glutathione S-transferase K03599 sspA; stringent starvation protein A
D CL55_00001270 Stringent starvation protein B K03600 sspB; stringent starvation protein B
D CL55_00019990 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D CL55_00007850 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CL55_00007310 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D CL55_00012340 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:pdq03019]
D CL55_00015330 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D CL55_00005260 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D CL55_00015160 ribonuclease III, bacterial K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CL55_00011710 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CL55_00015520 Oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D CL55_00012550 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CL55_00005190 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CL55_00010500 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CL55_00007510 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CL55_00012340 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D CL55_00017540 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CL55_00017870 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CL55_00011840 RNA chaperone Hfq K03666 hfq; host factor-I protein
D CL55_00008140 polyphosphate kinase 2, PA0141 family K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CL55_00009160 polyphosphate kinase 2, PA0141 family K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CL55_00017500 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D CL55_00002040 ADP-ribose pyrophosphatase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CL55_00019000 putative P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ
D CL55_00011640 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:pdq03011]
D CL55_00015790 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CL55_00014090 ribosomal protein S2, bacterial type K02967 RP-S2; small subunit ribosomal protein S2
D CL55_00000560 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3
D CL55_00000750 ribosomal protein S4, bacterial/organelle type K02986 RP-S4; small subunit ribosomal protein S4
D CL55_00000670 ribosomal protein S5, bacterial/organelle type K02988 RP-S5; small subunit ribosomal protein S5
D CL55_00015030 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CL55_00000460 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7
D CL55_00000640 Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CL55_00018700 Ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CL55_00000490 ribosomal protein S10, bacterial/organelle K02946 RP-S10; small subunit ribosomal protein S10
D CL55_00000740 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CL55_00000450 ribosomal protein S12, bacterial/organelle K02950 RP-S12; small subunit ribosomal protein S12
D CL55_00000730 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CL55_00000630 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CL55_00007500 ribosomal protein S15, bacterial/organelle K02956 RP-S15; small subunit ribosomal protein S15
D CL55_00015600 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CL55_00000590 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CL55_00015010 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CL55_00000540 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19
D CL55_00017420 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CL55_00016960 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CL55_00000400 ribosomal protein L1, bacterial/chloroplast K02863 RP-L1; large subunit ribosomal protein L1
D CL55_00000530 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2
D CL55_00000500 50S ribosomal protein L3, bacterial K02906 RP-L3; large subunit ribosomal protein L3
D CL55_00000510 50S ribosomal protein L4, bacterial/organelle K02926 RP-L4; large subunit ribosomal protein L4
D CL55_00000620 Ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CL55_00000650 ribosomal protein L6, bacterial type K02933 RP-L6; large subunit ribosomal protein L6
D CL55_00015000 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CL55_00000410 Ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CL55_00000390 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CL55_00000420 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CL55_00018710 ribosomal protein L13, bacterial type K02871 RP-L13; large subunit ribosomal protein L13
D CL55_00000600 ribosomal protein L14, bacterial/organelle K02874 RP-L14; large subunit ribosomal protein L14
D CL55_00000690 ribosomal protein L15, bacterial/organelle K02876 RP-L15; large subunit ribosomal protein L15
D CL55_00000570 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16
D CL55_00000770 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CL55_00000660 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18
D CL55_00015570 ribosomal protein L19, bacterial type K02884 RP-L19; large subunit ribosomal protein L19
D CL55_00009350 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CL55_00001990 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CL55_00000550 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22
D CL55_00000520 Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CL55_00000610 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24
D CL55_00002000 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CL55_00017240 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CL55_00000580 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CL55_00000680 ribosomal protein L30, bacterial/organelle K02907 RP-L30; large subunit ribosomal protein L30
D CL55_00012350 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CL55_00015260 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CL55_00017250 ribosomal protein L33, bacterial type K02913 RP-L33; large subunit ribosomal protein L33
D CL55_00020590 Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CL55_00009340 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CL55_00000720 ribosomal protein L36, bacterial type K02919 RP-L36; large subunit ribosomal protein L36
D CL55_00019060 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D CL55_00020620 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CL55_00020600 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CL55_00020610 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pdq03009]
D CL55_00015160 ribonuclease III, bacterial K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CL55_00015520 Oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D CL55_00015150 GTP-binding protein Era K03595 era; GTPase
D CL55_00002010 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D CL55_00019990 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D CL55_00006560 transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication K02600 nusA; transcription termination/antitermination protein NusA
D CL55_00002740 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D CL55_00000380 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D CL55_00003860 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D CL55_00018520 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CL55_00017270 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CL55_00020490 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CL55_00019100 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CL55_00002310 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CL55_00000120 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CL55_00001600 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CL55_00000310 putative S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CL55_00015290 putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CL55_00011700 rRNA methylase, putative, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CL55_00007880 23S rRNA methylase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D CL55_00005280 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CL55_00013200 Protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D CL55_00002420 putative N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D CL55_00011900 23S rRNA m2A2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CL55_00011940 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CL55_00006730 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CL55_00006540 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CL55_00015320 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D CL55_00010270 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CL55_00020170 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D CL55_00010220 Acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CL55_00015590 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D CL55_00010320 ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D CL55_00020450 TIGR03549 family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D CL55_00002130 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D CL55_00014180 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D CL55_00009670 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D CL55_00015330 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D CL55_00005260 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D CL55_00002490 RNAse H-fold protein YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CL55_00015540 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CL55_00011850 ribosome-associated GTPase EngA K03977 engA; GTPase
D CL55_00011830 GTP-binding protein HflX K03665 hflX; GTPase
D CL55_00017930 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CL55_00007300 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CL55_00012160 Guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CL55_00006580 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CL55_00006550 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D CL55_00005290 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
D CL55_00018450 metalloprotein, YbeY/UPF0054 family K07042 ybeY; probable rRNA maturation factor
D CL55_00007870 putative RNA-binding protein containing KH domain, possibly ribosomal protein K07574 yhbY; RNA-binding protein
D CL55_00003610 hypothetical protein K09889 yjgA; ribosome-associated protein
D CL55_00018970 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D CL55_00001420 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D CL55_00015270 putative metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:pdq03016]
D CL55_00019820 tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D CL55_00010530 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CL55_00002050 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CL55_00017300 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CL55_00002370 leucyl-tRNA synthetase, eubacterial and mitochondrial family K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CL55_00005570 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CL55_00017170 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CL55_00019620 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CL55_00014330 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CL55_00018770 aspartyl-tRNA synthetase, bacterial type K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CL55_00017140 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CL55_00009320 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CL55_00006020 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CL55_00009750 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CL55_00017110 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CL55_00011880 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CL55_00009360 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CL55_00009370 phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CL55_00018660 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CL55_00009620 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CL55_00001130 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CL55_00002700 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CL55_00011120 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CL55_00006590 tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CL55_00014600 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CL55_00017930 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CL55_00017450 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CL55_00020560 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CL55_00000110 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CL55_00005040 selenium donor protein K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CL55_00020580 ribonuclease P protein component, eubacterial K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D CL55_00020720 Bacterial RNase P class A K01978 rnpB; M1 RNA
D CL55_00007260 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D CL55_00002200 Exoribonuclease R K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D CL55_00018480 glycyl-tRNA synthetase, tetrameric type, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CL55_00018490 glycyl-tRNA synthetase, tetrameric type, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CL55_00005200 glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D CL55_00013720 Cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D CL55_00006740 tRNA-dihydrouridine synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D CL55_00018600 putative TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CL55_00018440 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CL55_00009700 rRNA methylase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D CL55_00015580 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CL55_00019280 rRNA methylase, putative, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CL55_00013940 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
D CL55_00006730 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CL55_00017810 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CL55_00019780 putative ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CL55_00017130 putative redox protein, regulator of disulfide bond formation K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D CL55_00014580 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D CL55_00010680 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D CL55_00020540 Glycine/D-amino acid oxidases (deaminating) K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D CL55_00017730 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CL55_00002820 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CL55_00013730 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CL55_00013740 Organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CL55_00018870 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CL55_00005120 iron-sulfur cluster binding protein, putative K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D CL55_00010820 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D CL55_00017740 tRNA-guanine transglycosylase, queuosine-34-forming K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CL55_00009780 tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CL55_00010210 universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CL55_00016970 putative glycoprotease GCP K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CL55_00005110 ATPase, YjeE family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CL55_00005720 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CL55_00011710 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CL55_00007510 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:pdq03012]
D CL55_00006570 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CL55_00009330 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CL55_00014080 translation elongation factor Ts K02357 tsf; elongation factor Ts
D CL55_00000360 translation elongation factor TU K02358 tuf; elongation factor Tu
D CL55_00000480 translation elongation factor TU K02358 tuf; elongation factor Tu
D CL55_00000470 translation elongation factor EF-G K02355 fusA; elongation factor G
D CL55_00001330 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CL55_00014060 ribosome recycling factor K02838 frr; ribosome recycling factor
D CL55_00001320 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CL55_00019070 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CL55_00000710 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CL55_00015100 translation elongation factor P K02356 efp; elongation factor P
D CL55_00014320 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D CL55_00020180 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:pdq03110]
D CL55_00017340 ATP-dependent Clp protease ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D CL55_00014720 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CL55_00010400 endopeptidase Clp ATP-binding regulatory subunit (clpX) K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CL55_00018410 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D CL55_00017540 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CL55_00014560 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D CL55_00017870 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CL55_00017530 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CL55_00006300 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 cbpA; curved DNA-binding protein
D CL55_00014570 Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB
D CL55_00010520 Disulfide bond chaperones of the HSP33 family K04083 hslO; molecular chaperone Hsp33
D CL55_00017550 Molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D CL55_00017880 Co-chaperonin GroES (HSP10) K04078 groES; chaperonin GroES
D CL55_00015190 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107]
D CL55_00007890 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CL55_00000160 F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CL55_00019300 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CL55_00005900 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D CL55_00011360 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D CL55_00009730 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CL55_00010420 hypothetical protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D CL55_00003740 FKBP-type peptidyl-prolyl cis-trans isomerases 1 K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D CL55_00017220 FKBP-type peptidyl-prolyl cis-trans isomerases 2 K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D CL55_00009680 FKBP-type peptidyl-prolyl cis-trans isomerases 2 K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D CL55_00003930 Parvulin-like peptidyl-prolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CL55_00010750 Parvulin-like peptidyl-prolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CL55_00018540 Parvulin-like peptidyl-prolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D CL55_00012330 thioredoxin K03671 TXN; thioredoxin
D CL55_00011690 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D CL55_00019310 Glutaredoxin, GrxC family K03676 grxC; glutaredoxin 3
D CL55_00001310 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D CL55_00019600 putative dithiol-disulfide isomerase involved in polyketide biosynthesis K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D CL55_00001400 Protein-disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CL55_00000790 Thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D CL55_00016350 periplasmic protein thiol:disulfide oxidoreductase, DsbE subfamily K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:pdq04131]
D CL55_00011910 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CL55_00005750 putative membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D CL55_00002330 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CL55_00019330 phosphoglycerate mutase, BPG-dependent K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CL55_00017980 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CL55_00018410 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:pdq03051]
D CL55_00018410 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:pdq03032]
D CL55_00007780 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CL55_00020110 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D CL55_00008870 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D CL55_00009380 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D CL55_00015780 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D CL55_00000010 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CL55_00014990 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CL55_00016940 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101]
D CL55_00018880 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D CL55_00005210 DNA-directed DNA polymerase III (polc) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CL55_00000020 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CL55_00005380 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CL55_00002390 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CL55_00010650 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CL55_00018190 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00007750 DNA polymerase III, epsilon subunit, Proteobacterial K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00014730 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00012060 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CL55_00013950 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CL55_00017060 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CL55_00014130 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CL55_00017480 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D CL55_00015860 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CL55_00000030 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CL55_00010070 DNA topoisomerase IV, A subunit, proteobacterial K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CL55_00010060 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CL55_00020530 DNA topoisomerase III, bacteria and conjugative plasmid K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:pdq03036]
D CL55_00007740 putative O-linked N-acetylglucosamine transferase, SPINDLY family K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D CL55_00004730 putative O-linked N-acetylglucosamine transferase, SPINDLY family K09667 OGT; protein O-GlcNAc transferase [EC:2.4.1.255]
D CL55_00015160 ribonuclease III, bacterial K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CL55_00009550 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D CL55_00020110 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D CL55_00008870 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D CL55_00009380 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D CL55_00015780 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D CL55_00006300 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 cbpA; curved DNA-binding protein
D CL55_00006290 hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM
D CL55_00000010 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CL55_00018610 Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CL55_00011840 RNA chaperone Hfq K03666 hfq; host factor-I protein
D CL55_00014150 chromosome segregation protein SMC, common bacterial type K03529 smc; chromosome segregation protein
D CL55_00005550 hypothetical protein K05896 scpA; segregation and condensation protein A
D CL55_00006530 segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D CL55_00001720 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CL55_00010510 Septum formation initiator K05589 ftsB; cell division protein FtsB
D CL55_00001620 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CL55_00006000 DNA segregation ATPase FtsK/SpoIIIE-related protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CL55_00001610 cell division protein FtsL K03586 ftsL; cell division protein FtsL
D CL55_00001710 Cell division septal protein K03589 ftsQ; cell division protein FtsQ
D CL55_00001670 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D CL55_00001730 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CL55_00001860 hypothetical protein K18778 zapD; cell division protein ZapD
D CL55_00009600 putative ATPase K06916 zapE; cell division protein ZapE
D CL55_00005100 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CL55_00019730 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CL55_00019970 Transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D CL55_00020060 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D CL55_00020070 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D CL55_00020080 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D CL55_00020100 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D CL55_00004880 CobQ/CobB/MinD/ParA nucleotide binding domain K03496 parA; chromosome partitioning protein
D CL55_00000130 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D CL55_00000140 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CL55_00010070 DNA topoisomerase IV, A subunit, proteobacterial K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CL55_00010060 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CL55_00000110 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CL55_00000120 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CL55_00020010 Site-specific recombinase XerC K03733 xerC; integrase/recombinase XerC
D CL55_00003010 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D CL55_00013120 ATPases involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CL55_00000810 ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:pdq03400]
D CL55_00001920 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CL55_00002460 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D CL55_00009050 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D CL55_00001380 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CL55_00019010 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D CL55_00014660 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CL55_00001850 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CL55_00017330 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CL55_00016450 Uncharacterized protein related to deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D CL55_00010230 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CL55_00009760 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D CL55_00019020 formamidopyrimidine-DNA glycosylase (fpg) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CL55_00011550 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CL55_00019930 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CL55_00014310 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CL55_00014130 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CL55_00017060 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CL55_00018900 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D CL55_00014620 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D CL55_00015080 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D CL55_00017100 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CL55_00000430 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CL55_00000440 DNA-directed RNA polymerase, beta' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CL55_00000760 DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CL55_00007290 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CL55_00010350 transcription-repair coupling factor (mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CL55_00002980 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CL55_00017010 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CL55_00012230 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D CL55_00005210 DNA-directed DNA polymerase III (polc) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CL55_00000020 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CL55_00005380 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D CL55_00002390 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CL55_00010650 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CL55_00018190 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00007750 DNA polymerase III, epsilon subunit, Proteobacterial K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00014730 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CL55_00012060 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CL55_00018880 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D CL55_00018120 protein RecA K03553 recA; recombination protein RecA
D CL55_00018640 Holliday junction DNA helicase, RuvA subunit K03550 ruvA; holliday junction DNA helicase RuvA
D CL55_00018650 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CL55_00018630 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CL55_00000250 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CL55_00015020 restart primosome assembly protein PriB K02686 priB; primosomal replication protein N
D CL55_00014190 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D CL55_00017720 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CL55_00015140 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D CL55_00012040 recombination protein RecR K06187 recR; recombination protein RecR
D CL55_00017590 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CL55_00012310 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D CL55_00012320 DNA helicase/exodeoxyribonuclease V, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D CL55_00015860 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CL55_00000030 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CL55_00020110 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D CL55_00008870 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D CL55_00018610 Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CL55_00009380 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D CL55_00015780 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D CL55_00009550 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D CL55_00012260 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V
D CL55_00012270 SOS-response transcriptional repressors (RecA-mediated autopeptidases) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D CL55_00015050 SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D CL55_00018110 hypothetical protein K03565 recX; regulatory protein
D CL55_00002090 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CL55_00002100 Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:pdq03029]
D CL55_00001230 Cytochrome b subunit of the bc complex K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CL55_00006570 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CL55_00009330 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CL55_00014080 translation elongation factor Ts K02357 tsf; elongation factor Ts
D CL55_00000360 translation elongation factor TU K02358 tuf; elongation factor Tu
D CL55_00000480 translation elongation factor TU K02358 tuf; elongation factor Tu
D CL55_00000470 translation elongation factor EF-G K02355 fusA; elongation factor G
D CL55_00015150 GTP-binding protein Era K03595 era; GTPase
D CL55_00018660 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CL55_00002370 leucyl-tRNA synthetase, eubacterial and mitochondrial family K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CL55_00018770 aspartyl-tRNA synthetase, bacterial type K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CL55_00019620 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CL55_00020040 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CL55_00020030 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CL55_00020050 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CL55_00003720 DNA/RNA endonuclease G, NUC1 K01173 ENDOG; endonuclease G, mitochondrial
D CL55_00018880 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
D CL55_00014010 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CL55_00017540 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CL55_00017550 Molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D CL55_00017870 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CL55_00017880 Co-chaperonin GroES (HSP10) K04078 groES; chaperonin GroES
D CL55_00017530 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CL55_00014600 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CL55_00014570 Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB
D CL55_00001310 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D CL55_00013120 ATPases involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CL55_00019160 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CL55_00019230 Cytochrome oxidase assembly factor K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D CL55_00019170 Uncharacterized protein required for cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D CL55_00020570 Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CL55_00019190 hypothetical protein K14998 SURF1; surfeit locus 1 family protein
D CL55_00019150 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems K07152 SCO1; protein SCO1
D CL55_00018410 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pdq02000]
D CL55_00005250 lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CL55_00003240 ABC-type multidrug transport system, ATPase and permease component K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D CL55_00018750 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase component K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D CL55_00005810 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CL55_00013680 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CL55_00006270 ATPase component of ABC transporter with duplicated ATPase domains K15738 uup; ABC transport system ATP-binding/permease protein
D CL55_00006640 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CL55_00010990 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CL55_00011000 ABC-type spermidine/putrescine transport systems, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CL55_00012480 ABC-type tungstate transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein
D CL55_00012490 ABC-type tungstate transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein
D CL55_00013000 ABC-type tungstate transport system, periplasmic component K05773 tupB; tungstate transport system permease protein
D CL55_00013010 ABC-type multidrug transport system, ATPase component K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CL55_00006130 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D CL55_00006120 ABC-type Fe3+ transport system, permease component K02011 afuB; iron(III) transport system permease protein
D CL55_00006110 ABC-type spermidine/putrescine transport systems, ATPase component K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CL55_00005070 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) K05845 opuC; osmoprotectant transport system substrate-binding protein
D CL55_00000960 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CL55_00007340 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CL55_00007320 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CL55_00000950 conserved hypothetical integral membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CL55_00007330 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CL55_00000940 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CL55_00007350 Protein of unknown function (DUF330) K18480 linN; cholesterol transport system auxiliary component
D CL55_00000980 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D CL55_00000990 putative NTP binding protein (contains STAS domain) K07122 mlaB; phospholipid transport system transporter-binding protein
D CL55_00007920 phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CL55_00007930 phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D CL55_00007940 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CL55_00007950 phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CL55_00013830 phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D CL55_00013800 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D CL55_00013810 ABC-type phosphate/phosphonate transport system, permease component K02042 phnE; phosphonate transport system permease protein
D CL55_00013820 ABC-type phosphate/phosphonate transport system, ATPase component K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D CL55_00009100 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D CL55_00009120 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K10002 gltK; glutamate/aspartate transport system permease protein
D CL55_00009110 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K10003 gltJ; glutamate/aspartate transport system permease protein
D CL55_00009130 ABC-type polar amino acid transport system, ATPase component K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D CL55_00016810 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00012890 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00000080 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00008560 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CL55_00016840 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00012900 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00000090 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00008570 Branched-chain amino acid ABC-type transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D CL55_00000100 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00008580 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00016850 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00012910 ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D CL55_00016820 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00012920 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00000060 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00008590 ABC-type branched-chain amino acid transport systems, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CL55_00000070 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00008600 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00016830 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00012930 ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CL55_00016420 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CL55_00006470 ABC-type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein
D CL55_00006480 ABC-type uncharacterized transport system, permease component K13894 yejB; microcin C transport system permease protein
D CL55_00006490 ABC-type uncharacterized transport system, permease component K13895 yejE; microcin C transport system permease protein
D CL55_00006500 ABC-type uncharacterized transport system, duplicated ATPase component K13896 yejF; microcin C transport system ATP-binding protein
D CL55_00005470 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein
D CL55_00005460 ABC-type Fe3+-siderophore transport system, permease component K25027 btuC; cobalamin transport system permease protein
D CL55_00005450 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase component K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D CL55_00005360 putative permease K07091 lptF; lipopolysaccharide export system permease protein
D CL55_00005350 putative permease K11720 lptG; lipopolysaccharide export system permease protein
D CL55_00018960 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CL55_00014290 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D CL55_00014280 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D CL55_00016380 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D CL55_00016390 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D CL55_00016400 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D CL55_00016410 heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D CL55_00001010 ABC-type polysaccharide/polyol phosphate export systems, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D CL55_00001000 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CL55_00007370 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D CL55_00010440 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CL55_00012370 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump
D CL55_00009240 Sugar phosphate permease K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D CL55_00010240 Major Facilitator Superfamily K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D CL55_00013280 PUCC protein K08226 pucC; MFS transporter, BCD family, chlorophyll transporter
D CL55_00013370 Arabinose efflux permease K08226 pucC; MFS transporter, BCD family, chlorophyll transporter
D CL55_00019940 Major Facilitator Superfamily K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D CL55_00019360 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CL55_00019370 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D CL55_00019380 Phosphotransferase system, mannose/fructose-specific component IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D CL55_00018980 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D CL55_00012200 Ion transport protein K10716 kch; voltage-gated potassium channel
D CL55_00018380 Ammonia permease K03320 amt; ammonium transporter, Amt family
D CL55_00019410 ammonium transporter K03320 amt; ammonium transporter, Amt family
D CL55_00017800 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CL55_00019710 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CL55_00004970 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D CL55_00001260 Glutathione S-transferase K03599 sspA; stringent starvation protein A
D CL55_00011920 Integral membrane protein, interacts with FtsH K19416 yccA; modulator of FtsH protease
D CL55_00001210 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D CL55_00004660 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CL55_00004670 Flagellar motor protein K02557 motB; chemotaxis protein MotB
D CL55_00002970 Biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D CL55_00006980 Biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D CL55_00006970 Biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D CL55_00002960 Biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D CL55_00002880 TolQ protein K03562 tolQ; biopolymer transport protein TolQ
D CL55_00002870 TolR protein K03560 tolR; biopolymer transport protein TolR
D CL55_00002250 magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) K03284 corA; magnesium transporter
D CL55_00008000 Mg2+ and Co2+ transporter K16074 zntB; zinc transporter
D CL55_00016010 crcB protein K06199 crcB; fluoride exporter
D CL55_00001910 Putative Mg2+ and Co2+ transporter CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CL55_00012020 Carbohydrate-selective porin K16080 mnoP; high affinity Mn2+ porin
D CL55_00015870 Outer membrane protein-related peptidoglycan-associated (lipo)protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D CL55_00005480 Outer membrane cobalamin receptor protein K16092 btuB; vitamin B12 transporter
D CL55_00008180 Outer membrane receptor protein, mostly Fe transport K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CL55_00003950 Outer membrane protein K15725 czcC; outer membrane protein, heavy metal efflux system
D CL55_00009430 Outer membrane protein K15725 czcC; outer membrane protein, heavy metal efflux system
D CL55_00012010 Outer membrane protein K15725 czcC; outer membrane protein, heavy metal efflux system
D CL55_00002670 Outer membrane protein K12340 tolC; outer membrane protein
D CL55_00014010 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CL55_00011860 outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB
D CL55_00009650 putative lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D CL55_00010260 outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD
D CL55_00002350 Small protein A (tmRNA-binding) K06186 bamE; outer membrane protein assembly factor BamE
D CL55_00018950 lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D CL55_00018940 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D CL55_00018550 Organic solvent tolerance protein OstA K04744 lptD; LPS-assembly protein
D CL55_00002380 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D CL55_00018460 Putative Mg2+ and Co2+ transporter CorC K06189 corC; hemolysin (HlyC) family protein
D CL55_00006840 Putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein
D CL55_00009280 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D CL55_00017040 putative divalent heavy-metal cations transporter K16267 zipB; zinc and cadmium transporter
D CL55_00003970 heavy metal efflux pump (cobalt-zinc-cadmium) K15726 czcA; heavy metal efflux system protein
D CL55_00011990 heavy metal efflux pump (cobalt-zinc-cadmium) K15726 czcA; heavy metal efflux system protein
D CL55_00019720 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D CL55_00003630 EamA-like transporter family K15268 eamA; O-acetylserine/cysteine efflux transporter
D CL55_00009410 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D CL55_00003490 Ca2+/H+ antiporter K07300 chaA; Ca2+:H+ antiporter
D CL55_00018150 putative sodium:solute symporter, VC_2705 subfamily K14393 actP; cation/acetate symporter
D CL55_00018910 Kef-type K+ transport systems, membrane component K03455 KEA1_2_3; K+:H+ antiporter
D CL55_00015980 Chromate transport protein ChrA K07240 chrA; chromate transporter
D CL55_00015990 Chromate transport protein ChrA K07240 chrA; chromate transporter
D CL55_00006450 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter
D CL55_00008160 Chromate transport protein ChrA K07240 chrA; chromate transporter
D CL55_00008170 Chromate transport protein ChrA K07240 chrA; chromate transporter
D CL55_00016170 Sulfate permease and related transporters (MFS superfamily) K03321 TC.SULP; sulfate permease, SulP family
D CL55_00006670 arsenical-resistance protein K03325 ACR3; arsenite transporter
D CL55_00017430 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D CL55_00014210 K+ transporter K03549 kup; KUP system potassium uptake protein
D CL55_00005680 Putative threonine efflux protein K11250 leuE; leucine efflux protein
D CL55_00013850 putative branched-chain amino acid permease (azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump
D CL55_00013840 putative membrane protein K26606 azlD; branched chain amino acid efflux pump
D CL55_00017160 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein
D CL55_00005850 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein
D CL55_00005840 Tripartite tricarboxylate transporter TctB family K07794 tctB; putative tricarboxylic transport membrane protein
D CL55_00017150 Tripartite tricarboxylate transporter TctB family K07794 tctB; putative tricarboxylic transport membrane protein
D CL55_00005830 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D CL55_00012290 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D CL55_00010800 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter
D CL55_00001670 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D CL55_00005750 putative membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D CL55_00012450 hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein
D CL55_00006990 TonB family C-terminal domain K03832 tonB; periplasmic protein TonB
D CL55_00002210 TonB family C-terminal domain K03832 tonB; periplasmic protein TonB
D CL55_00002840 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D CL55_00002860 TolA protein K03646 tolA; colicin import membrane protein
D CL55_00002850 tol-pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D CL55_00003960 RND family efflux transporter, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D CL55_00012000 RND family efflux transporter, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D CL55_00007770 RND family efflux transporter, MFP subunit K21135 mexM; membrane fusion protein, multidrug efflux system
D CL55_00019730 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CL55_00013260 Tryptophan-rich sensory protein K05770 TSPO; translocator protein
D CL55_00016360 c-type cytochrome biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:pdq02044]
D CL55_00002670 Outer membrane protein K12340 tolC; outer membrane protein
D CL55_00001880 Type II secretory pathway, prepilin signal peptidase PulO and related peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CL55_00018070 prepilin-type N-terminal cleavage/methylation domain K02650 pilA; type IV pilus assembly protein PilA
D CL55_00001900 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D CL55_00001890 Type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC
D CL55_00000880 Type II secretory pathway, component HofQ K02666 pilQ; type IV pilus assembly protein PilQ
D CL55_00002790 prepilin-type N-terminal cleavage/methylation domain K08084 fimT; type IV fimbrial biogenesis protein FimT
D CL55_00011130 FimV N-terminal domain K08086 fimV; pilus assembly protein FimV
D CL55_00006060 YGGT family K02221 yggT; YggT family protein
D CL55_00015700 competence protein ComEA helix-hairpin-helix repeat region K02237 comEA; competence protein ComEA
D CL55_00014260 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D CL55_00004280 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CL55_00004710 Flagellar biosynthesis pathway, component FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CL55_00004350 cytoplasmic domain of flagellar protein FhlB-containing protein K04061 flhB2; flagellar biosynthesis protein
D CL55_00004390 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) K02409 fliF; flagellar M-ring protein FliF
D CL55_00004410 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D CL55_00004420 ATPase FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CL55_00004470 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CL55_00004480 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CL55_00004490 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CL55_00004500 Flagellar biosynthesis pathway, component FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CL55_00004510 Flagellar biosynthesis pathway, component FliR K02421 fliR; flagellar biosynthesis protein FliR
D CL55_00001400 Protein-disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CL55_00001770 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CL55_00019300 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D CL55_00017760 protein-export membrane protein, SecD/SecF family/protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CL55_00000370 preprotein translocase, SecE subunit, bacterial K03073 secE; preprotein translocase subunit SecE
D CL55_00017770 protein-export membrane protein, SecD/SecF family/protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CL55_00007540 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CL55_00000700 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CL55_00002060 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CL55_00019130 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CL55_00017750 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CL55_00020570 Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CL55_00001140 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D CL55_00001150 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D CL55_00001160 Twin arginine targeting (Tat) protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:pdq02042]
D CL55_00001910 Putative Mg2+ and Co2+ transporter CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:pdq02022]
D CL55_00007980 phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CL55_00007970 phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D CL55_00017910 Signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D CL55_00017900 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07690 evgA; two-component system, NarL family, response regulator EvgA
D CL55_00011570 Signal transduction histidine kinase, nitrogen specific K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D CL55_00011560 nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D CL55_00020470 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D CL55_00020460 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D CL55_00004380 Signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D CL55_00004370 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC
C 02035 Bacterial motility proteins [BR:pdq02035]
D CL55_00004410 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D CL55_00004420 ATPase FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CL55_00004480 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CL55_00004490 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CL55_00004500 Flagellar biosynthesis pathway, component FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CL55_00004510 Flagellar biosynthesis pathway, component FliR K02421 fliR; flagellar biosynthesis protein FliR
D CL55_00004280 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CL55_00004710 Flagellar biosynthesis pathway, component FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CL55_00004400 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CL55_00004460 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CL55_00004470 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CL55_00004390 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) K02409 fliF; flagellar M-ring protein FliF
D CL55_00004620 Flagellar basal-body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D CL55_00004220 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CL55_00004610 Flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D CL55_00004450 Flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D CL55_00004360 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CL55_00004550 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CL55_00004560 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CL55_00004570 Flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CL55_00004590 flagellar hook-basal body protein K02391 flgF; flagellar basal-body rod protein FlgF
D CL55_00004600 flagellar basal-body rod protein FlgG, Gram-negative bacteria K02392 flgG; flagellar basal-body rod protein FlgG
D CL55_00004630 Rod binding protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D CL55_00004580 flagellar hook-basal body protein/flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D CL55_00004640 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CL55_00004650 Flagellin-related hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D CL55_00004300 Flagellin-related hook-associated protein K02406 fliC; flagellin
D CL55_00004320 Flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D CL55_00004330 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CL55_00004250 RNA polymerase sigma factor, FliA/WhiG family/RNA polymerase sigma factor, sigma-70 family K02405 fliA; RNA polymerase sigma factor FliA
D CL55_00004660 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D CL55_00004670 Flagellar motor protein K02557 motB; chemotaxis protein MotB
D CL55_00004380 Signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D CL55_00004370 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC
D CL55_00004230 Anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CL55_00004310 putative flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D CL55_00004270 flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D CL55_00018070 prepilin-type N-terminal cleavage/methylation domain K02650 pilA; type IV pilus assembly protein PilA
D CL55_00001900 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D CL55_00001890 Type II secretory pathway, component PulF K02653 pilC; type IV pilus assembly protein PilC
D CL55_00001880 Type II secretory pathway, prepilin signal peptidase PulO and related peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CL55_00000880 Type II secretory pathway, component HofQ K02666 pilQ; type IV pilus assembly protein PilQ
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pdq04812]
D CL55_00020060 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D CL55_00001730 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CL55_00001720 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CL55_00004880 CobQ/CobB/MinD/ParA nucleotide binding domain K03496 parA; chromosome partitioning protein
D CL55_00000130 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D CL55_00000140 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:pdq04147]
D CL55_00018410 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D CL55_00010500 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CL55_00002330 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CL55_00017990 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CL55_00017980 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CL55_00011360 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D CL55_00017870 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CL55_00017540 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CL55_00007130 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CL55_00013880 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CL55_00000360 translation elongation factor TU K02358 tuf; elongation factor Tu
D CL55_00000480 translation elongation factor TU K02358 tuf; elongation factor Tu
D CL55_00001130 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CL55_00016800 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009890 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00009900 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CL55_00010330 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CL55_00019870 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D CL55_00002920 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CL55_00009870 Adenine/guanine phosphoribosyltransferase-related PRPP-binding protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CL55_00005630 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CL55_00017390 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CL55_00005770 Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CL55_00000800 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CL55_00003870 Pterin-4a-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D CL55_00008040 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CL55_00018620 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CL55_00015530 Zn-dependent protease with chaperone function K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D CL55_00009590 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00011460 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CL55_00015640 Electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D CL55_00007530 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CL55_00019330 phosphoglycerate mutase, BPG-dependent K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CL55_00003800 Bacterial lipocalin K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:pdq02048]
D CL55_00001360 Growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D CL55_00006790 hypothetical protein K07172 mazE; antitoxin MazE
D CL55_00006630 putative nucleic acid-binding protein, contains PIN domain K07062 fitB; toxin FitB [EC:3.1.-.-]
D CL55_00001730 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CL55_00020060 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D CL55_00010070 DNA topoisomerase IV, A subunit, proteobacterial K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CL55_00010060 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CL55_00010530 glutamyl-tRNA synthetase, bacterial family K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CL55_00011200 hypothetical protein K09159 cptB; antitoxin CptB
D CL55_00014600 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:pdq01504]
D CL55_00019730 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D CL55_00019720 Cation/multidrug efflux pump K18138 acrB; multidrug efflux pump
D CL55_00002670 Outer membrane protein K12340 tolC; outer membrane protein
D CL55_00017900 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07690 evgA; two-component system, NarL family, response regulator EvgA
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pdq00537]
D CL55_00008040 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pdq03100]
D CL55_00021000 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CL55_00020750 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CL55_00020730 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020910 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020970 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020880 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020920 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CL55_00020960 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CL55_00021020 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CL55_00021050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CL55_00021090 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CL55_00021010 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CL55_00020770 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CL55_00021060 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CL55_00020840 tRNA-His K14226 tRNA-His; tRNA His
D CL55_00020740 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CL55_00020820 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00020890 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00021030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00020980 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00020850 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CL55_00020810 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CL55_00021040 tRNA-Met K14230 tRNA-Met; tRNA Met
D CL55_00021070 tRNA-Met K14230 tRNA-Met; tRNA Met
D CL55_00021080 tRNA-Met K14230 tRNA-Met; tRNA Met
D CL55_00021100 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CL55_00020900 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CL55_00020940 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CL55_00020950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CL55_00020860 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CL55_00020870 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CL55_00020830 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CL55_00020780 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CL55_00020800 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CL55_00020790 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CL55_00020760 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CL55_00020930 tRNA-Val K14237 tRNA-Val; tRNA Val
D CL55_00020990 tRNA-Val K14237 tRNA-Val; tRNA Val
D CL55_00020600 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CL55_00020610 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CL55_00020620 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CL55_00020700 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D CL55_00020720 Bacterial RNase P class A K01978 rnpB; M1 RNA
D CL55_00020710 tmRNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CL55_00005690 NAD-dependent aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D CL55_00016750 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D CL55_00012830 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D CL55_00016760 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D CL55_00012840 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D CL55_00016730 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]
D CL55_00006850 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D CL55_00006860 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D CL55_00009250 Dehydrogenases (flavoproteins) K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D CL55_00014820 putative NAD/FAD-dependent oxidoreductase K18208 RNLS; renalase [EC:1.6.3.5]
D CL55_00007520 putative NAD(P)H quinone oxidoreductase, PIG3 family K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D CL55_00016430 NADPH:quinone reductase and related Zn-dependent oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D CL55_00004950 alkyl hydroperoxide reductase, F subunit K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D CL55_00005700 methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D CL55_00010720 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D CL55_00011310 Glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D CL55_00003780 Sulfite oxidase-related enzyme K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D CL55_00008620 Alternative oxidase K17893 AOX1; ubiquinol oxidase [EC:1.10.3.11]
D CL55_00014960 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CL55_00004960 peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D CL55_00006330 Pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D CL55_00019750 Pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D CL55_00012540 putative metal-dependent enzyme of the double-stranded beta helix superfamily K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91]
D CL55_00014370 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D CL55_00008030 Protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D CL55_00006660 Protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D CL55_00011970 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D CL55_00019580 Cyclopropane fatty acid synthase and related methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D CL55_00003160 putative carbamoyl transferase, NodU family K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D CL55_00018470 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D CL55_00011390 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D CL55_00011400 Putative arginyl-tRNA:protein arginylyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D CL55_00005390 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CL55_00003680 Membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D CL55_00013930 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D CL55_00017600 Glutamine synthetase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D CL55_00018990 Serine kinase of the HPr protein, regulates carbohydrate metabolism K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D CL55_00005510 formyl-CoA transferase K07749 frc; formyl-CoA transferase [EC:2.8.3.16]
D CL55_00005520 formyl-CoA transferase K07749 frc; formyl-CoA transferase [EC:2.8.3.16]
D CL55_00016900 putative acyl-CoA transferases/carnitine dehydratase K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20]
D CL55_00016780 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CL55_00010830 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CL55_00012530 acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CL55_00009610 putative metal-dependent phosphoesterases (PHP family) K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D CL55_00008820 phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D CL55_00007200 Alkyl sulfatase and related hydrolase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D CL55_00010640 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CL55_00014270 Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CL55_00020510 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CL55_00017620 putative amidohydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D CL55_00015280 MAF protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D CL55_00006310 Altronate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D CL55_00012670 yjeF C-terminal region, hydroxyethylthiazole kinase-related K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CL55_00005780 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D CL55_00005790 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D CL55_00002180 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D CL55_00014650 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D CL55_00016280 copper-(or silver)-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D CL55_00005580 Uncharacterized protein required for formate dehydrogenase activity K02379 fdhD; FdhD protein
D CL55_00014550 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S
D CL55_00015440 Ferredoxin K05524 fdxA; ferredoxin
D CL55_00014590 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D CL55_00015650 Electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D CL55_00017690 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D CL55_00015770 putative N-acetylglucosaminyl transferase K19804 lapB; lipopolysaccharide assembly protein B
D CL55_00013170 putative integral membrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D CL55_00018790 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D CL55_00018800 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D CL55_00019440 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D CL55_00013640 putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily) K06049 bchO; magnesium chelatase accessory protein
C 99988 Secondary metabolism
C 99999 Others
D CL55_00008430 DoxX K15977 K15977; putative oxidoreductase
D CL55_00006280 putative esterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D CL55_00017360 Cold shock protein K03704 cspA; cold shock protein
D CL55_00019420 Nitrogen regulatory protein PII K04752 glnK; nitrogen regulatory protein P-II 2
D CL55_00006610 Transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D CL55_00008480 putative exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D CL55_00017350 hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D CL55_00010380 trigger factor K03545 tig; trigger factor
D CL55_00003790 putative membrane protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D CL55_00013910 SsrA-binding protein K03664 smpB; SsrA-binding protein
D CL55_00018720 putative redox protein, regulator of disulfide bond formation K07397 yhfA; putative redox protein
D CL55_00010080 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D CL55_00017230 DNA repair protein radc K03630 radC; DNA repair protein RadC
D CL55_00001300 hypothetical protein K09760 rmuC; DNA recombination protein RmuC
D CL55_00020520 DNA protecting protein DprA K04096 smf; DNA processing protein
D CL55_00011340 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 ycaJ; putative ATPase
D CL55_00009500 Site-specific recombinase, DNA invertase Pin-like protein K14060 pinR; putative DNA-invertase from lambdoid prophage Rac
D CL55_00011950 putative 3'-5' exonuclease related to the exonuclease domain of PolB K07501 K07501; 3'-5' exonuclease
D CL55_00000910 transposase K07491 rayT; REP-associated tyrosine transposase
C 99979 Viral proteins
C 99998 Others
D CL55_00012050 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC
D CL55_00016530 cryptochrome, DASH family K25656 cry; cryptochrome
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CL55_00005730 Gamma-aminobutyrate permease and related permease K03293 TC.AAT; amino acid transporter, AAT family
D CL55_00011540 Amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D CL55_00001940 Na+/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
C 99978 Cell growth
D CL55_00010730 intracellular septation protein A K06190 ispZ; intracellular septation protein
D CL55_00002520 hypothetical protein K06320 cgeB; spore maturation protein CgeB
C 99993 Cell motility
C 99995 Signaling proteins
D CL55_00006600 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D CL55_00014970 putative ATPase related to phosphate starvation-inducible protein PhoH K07175 phoH2; PhoH-like ATPase
D CL55_00018200 putative signal-transduction protein containing cAMP-binding and CBS domains K07182 K07182; CBS domain-containing protein
D CL55_00003000 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D CL55_00006010 Outer membrane lipoprotein-sorting protein K03634 lolA; outer membrane lipoprotein carrier protein
D CL55_00000970 Surface lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D CL55_00014000 Outer membrane protein K06142 hlpA; outer membrane protein
D CL55_00011960 Membrane proteins related to metalloendopeptidase K06194 nlpD; lipoprotein NlpD
D CL55_00006170 Uncharacterized protein involved in outer membrane biogenesis K07290 yhjG; AsmA family protein
D CL55_00018400 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D CL55_00016370 Cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D CL55_00016330 cytochrome c-type biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D CL55_00016340 Uncharacterized protein involved in biosynthesis of c-type cytochromes K02200 ccmH; cytochrome c-type biogenesis protein CcmH
C 99994 Others
D CL55_00007960 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D CL55_00012990 hypothetical protein K02192 bfd; bacterioferritin-associated ferredoxin
D CL55_00000780 Uncharacterized protein involved in tolerance to divalent cations K03926 cutA; periplasmic divalent cation tolerance protein
D CL55_00001500 Uncharacterized protein affecting Mg2+/Co2+ transport K06195 apaG; ApaG protein
D CL55_00000850 iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CL55_00011050 putative membrane protein, required for colicin V production K03558 cvpA; membrane protein required for colicin V production
D CL55_00016700 Carbonic anhydrase/acetyltransferase, isoleucine patch superfamily K02617 paaY; phenylacetic acid degradation protein
D CL55_00012620 Truncated hemoglobin K06886 glbN; hemoglobin
D CL55_00006520 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein
D CL55_00020320 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein
D CL55_00018680 Iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein
D CL55_00009210 putative membrane protein K07058 K07058; membrane protein
D CL55_00015950 putative sulfurtransferase K07146 K07146; UPF0176 protein
D CL55_00005180 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol K11477 glcG; glc operon protein GlcG
D CL55_00006680 arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH
D CL55_00006210 hypothetical protein K03745 slyX; SlyX protein
D CL55_00011060 hypothetical protein K03749 dedD; DedD protein
D CL55_00018210 putative membrane-associated protein K03975 dedA; membrane-associated protein
D CL55_00006180 putative membrane protein K08972 K08972; putative membrane protein
D CL55_00013210 putative membrane protein K13256 psiE; protein PsiE
C 99997 Function unknown
D CL55_00010630 Ankyrin repeat protein K06867 K06867; uncharacterized protein
D CL55_00001840 putative ATPase (AAA+ superfamily) K06923 K06923; uncharacterized protein
D CL55_00010780 putative Fe-S protein K06938 K06938; uncharacterized protein
D CL55_00019560 putative NAD/FAD-binding protein K06954 K06954; uncharacterized protein
D CL55_00015910 putative dioxygenase of extradiol dioxygenase family K06991 K06991; uncharacterized protein
D CL55_00010600 putative esterase K07000 K07000; uncharacterized protein
D CL55_00019490 putative hydrolase of the alpha/beta superfamily K07018 K07018; uncharacterized protein
D CL55_00016110 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein
D CL55_00020360 putative permease K07086 K07086; uncharacterized protein
D CL55_00003640 putative permease K07090 K07090; uncharacterized protein
D CL55_00003910 putative permease K07090 K07090; uncharacterized protein
D CL55_00006710 putative permease K07090 K07090; uncharacterized protein
D CL55_00014450 putative permease K07090 K07090; uncharacterized protein
D CL55_00005430 putative permease K07090 K07090; uncharacterized protein
D CL55_00010850 putative transporter component K07112 K07112; uncharacterized protein
D CL55_00010860 putative transporter component K07112 K07112; uncharacterized protein
D CL55_00010870 putative transporter component K07112 K07112; uncharacterized protein
D CL55_00000040 Proteins containing SET domain K07117 K07117; uncharacterized protein
D CL55_00004290 TPR repeat, SEL1 subfamily protein K07126 K07126; uncharacterized protein
D CL55_00004700 Sel1 repeat K07126 K07126; uncharacterized protein
D CL55_00001170 TPR repeat, SEL1 subfamily protein K07126 K07126; uncharacterized protein
D CL55_00006260 putative FAD-dependent dehydrogenase K07137 K07137; uncharacterized protein
D CL55_00014780 Uncharacterized protein, similar to the N-terminal domain of Lon protease K07157 K07157; uncharacterized protein
D CL55_00010900 hypothetical protein K09004 K09004; uncharacterized protein
D CL55_00017370 hypothetical protein K09005 K09005; uncharacterized protein
D CL55_00016950 hypothetical protein K09117 K09117; uncharacterized protein
D CL55_00020140 hypothetical protein K09131 K09131; uncharacterized protein
D CL55_00008450 putative conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN K09132 K09132; uncharacterized protein
D CL55_00019480 hypothetical protein K09158 K09158; uncharacterized protein
D CL55_00012850 hypothetical protein K09386 K09386; uncharacterized protein
D CL55_00019570 hypothetical protein K09701 K09701; uncharacterized protein
D CL55_00007050 hypothetical protein K09780 K09780; uncharacterized protein
D CL55_00002940 hypothetical protein K09791 K09791; uncharacterized protein
D CL55_00016180 hypothetical protein K09792 K09792; uncharacterized protein
D CL55_00013890 hypothetical protein K09801 K09801; uncharacterized protein
D CL55_00012190 hypothetical protein K09803 K09803; uncharacterized protein
D CL55_00005970 hypothetical protein K09803 K09803; uncharacterized protein
D CL55_00011290 hypothetical protein K09861 K09861; uncharacterized protein
D CL55_00010770 hypothetical protein K09919 K09919; uncharacterized protein
D CL55_00020020 hypothetical protein K09921 K09921; uncharacterized protein
D CL55_00012300 hypothetical protein K09945 K09945; uncharacterized protein
D CL55_00003710 hypothetical protein K09954 K09954; uncharacterized protein
D CL55_00016520 hypothetical protein K09966 K09966; uncharacterized protein
D CL55_00010110 hypothetical protein K09989 K09989; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 1, 2024