+D GENES KO #

  KEGG Orthology (KO) - Prevotella dentalis

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:pdt00010] D Prede_2046 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1313 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1513 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Prede_2642 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Prede_1880 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D Prede_0600 hypothetical protein K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D Prede_0276 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Prede_2155 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Prede_0400 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Prede_0342 fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Prede_0083 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Prede_2298 putative homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Prede_0704 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Prede_2293 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Prede_0485 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Prede_0807 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Prede_1278 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Prede_1279 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Prede_0152 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Prede_1728 galactose mutarotase-like enzyme K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Prede_1731 galactose mutarotase-like enzyme K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Prede_1717 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Prede_1281 ATP-dependent phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:pdt00020] D Prede_2250 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Prede_2249 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Prede_1103 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Prede_1278 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Prede_1279 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Prede_1464 menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Prede_1465 succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Prede_1463 succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Prede_1530 hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Prede_0197 malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Prede_1608 pyruvate/oxaloacetate carboxyltransferase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D Prede_1281 ATP-dependent phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Prede_0807 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:pdt00030] D Prede_1513 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Prede_2151 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Prede_1738 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Prede_1739 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Prede_1456 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Prede_1938 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Prede_1717 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Prede_0414 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Prede_1871 2-keto-3-deoxy-6-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Prede_0135 sugar kinase, ribokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Prede_1872 sugar kinase, ribokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Prede_0276 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Prede_0600 hypothetical protein K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D Prede_2642 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Prede_1880 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:pdt00040] D Prede_0900 pectin methylesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D Prede_2707 5-keto 4-deoxyuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D Prede_2325 glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D Prede_2292 mannitol-1-phosphate/altronate dehydrogenase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58] D Prede_1874 altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7] D Prede_0789 mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D Prede_1978 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Prede_1734 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D Prede_2151 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Prede_1735 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D Prede_1774 pentulose/hexulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Prede_1775 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Prede_0972 pentulose/hexulose kinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D Prede_0964 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] C 00051 Fructose and mannose metabolism [PATH:pdt00051] D Prede_0044 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Prede_1504 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Prede_1660 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Prede_0474 phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Prede_1217 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_1722 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_1661 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_2125 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Prede_2124 nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Prede_0971 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14] D Prede_0972 pentulose/hexulose kinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D Prede_0964 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D Prede_2642 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Prede_1880 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D Prede_0600 hypothetical protein K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D Prede_1775 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Prede_0276 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Prede_0046 beta-fructosidase, levanase/invertase K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80] D Prede_0047 beta-fructosidase, levanase/invertase K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80] D Prede_1739 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism [PATH:pdt00052] D Prede_1728 galactose mutarotase-like enzyme K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Prede_1731 galactose mutarotase-like enzyme K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Prede_1730 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Prede_0683 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Prede_1717 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Prede_2046 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1313 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_0791 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1157 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1721 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1042 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_0227 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D Prede_2217 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Prede_1307 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1308 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_2024 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1617 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1618 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_2706 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component D Prede_2642 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism [PATH:pdt00053] D Prede_1978 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Prede_1734 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] C 00500 Starch and sucrose metabolism [PATH:pdt00500] D Prede_1835 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_1842 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_2178 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_2171 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D Prede_2172 cellobiose phosphorylase K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20] D Prede_1526 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D Prede_2160 glycosyltransferase K16150 K16150; glycogen synthase [EC:2.4.1.11] D Prede_0676 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Prede_0391 alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Prede_1111 pullulanase, type I K01200 pulA; pullulanase [EC:3.2.1.41] D Prede_1123 glycosidase K01176 AMY; alpha-amylase [EC:3.2.1.1] D Prede_2161 alpha-amylase/alpha-mannosidase K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1] D Prede_1112 Glycoside hydrolase 97 K21574 susB; glucan 1,4-alpha-glucosidase [EC:3.2.1.3] D Prede_1113 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Prede_1717 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Prede_2046 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1313 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1513 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Prede_0044 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Prede_1504 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pdt00520] D Prede_1035 N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Prede_0866 N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Prede_1534 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D Prede_1052 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D Prede_1053 6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D Prede_0044 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Prede_1504 sugar kinase, ribokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Prede_1752 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Prede_0739 N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D Prede_2339 Nucleoside-diphosphate-sugar pyrophosphorylase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Prede_1172 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Prede_0478 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Prede_1037 N-acyl-D-glucosamine 2-epimerase K01787 RENBP; N-acylglucosamine 2-epimerase [EC:5.1.3.8] D Prede_1038 dihydrodipicolinate synthase/N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D Prede_0837 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Prede_1737 alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55] D Prede_1159 alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55] D Prede_1758 beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D Prede_2046 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1313 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1717 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Prede_1978 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Prede_1730 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Prede_0683 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Prede_2217 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Prede_1513 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Prede_1660 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Prede_0474 phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Prede_1217 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_1722 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_1661 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_2125 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Prede_2124 nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Prede_2699 putative kinase, galactokinase/mevalonate kinase K25314 FKGP; fucokinase / fucose-1-phosphate guanylyltransferase [EC:2.7.1.52 2.7.7.30] C 00620 Pyruvate metabolism [PATH:pdt00620] D Prede_0152 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Prede_0807 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Prede_1278 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Prede_1279 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Prede_2033 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Prede_0134 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Prede_0133 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Prede_2293 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Prede_0649 Zn-dependent hydrolase, glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Prede_0531 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Prede_1608 pyruvate/oxaloacetate carboxyltransferase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D Prede_0197 malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Prede_1530 hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Prede_1281 ATP-dependent phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Prede_0485 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Prede_0777 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pdt00630] D Prede_0152 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Prede_0197 malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Prede_2250 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Prede_2249 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Prede_0543 lactate dehydrogenase-like oxidoreductase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Prede_1958 haloacid dehalogenase superfamily enzyme, subfamily IA K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Prede_1977 putative phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Prede_1162 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1543 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_0759 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Prede_1943 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Prede_1944 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Prede_1941 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Prede_1942 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Prede_1871 2-keto-3-deoxy-6-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Prede_0590 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:pdt00640] D Prede_0152 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Prede_0134 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Prede_0133 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Prede_2033 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Prede_1444 acetyl-CoA hydrolase K22214 scpC; propionyl-CoA:succinyl-CoA transferase [EC:2.8.3.27] C 00650 Butanoate metabolism [PATH:pdt00650] D Prede_1527 acetyl/propionyl-CoA carboxylase, alpha subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Prede_1464 menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Prede_1465 succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Prede_1463 succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Prede_2033 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Prede_0807 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Prede_1278 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Prede_1279 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Prede_0816 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Prede_0815 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:pdt00660] D Prede_0816 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Prede_0815 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Prede_0774 isopropylmalate/homocitrate/citramalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21] D Prede_0776 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Prede_0775 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Prede_0773 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:pdt00190] D Prede_1923 NADH:ubiquinone oxidoreductase subunit 3 (chain A) K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Prede_1922 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Prede_1921 NADH:ubiquinone oxidoreductase 49 kD subunit 7 K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D Prede_1920 NADH:ubiquinone oxidoreductase subunit 1 (chain H) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Prede_1919 NADH:ubiquinone oxidoreductase chain I-like protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Prede_1917 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Prede_1916 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Prede_1915 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Prede_1914 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Prede_2342 NADH dehydrogenase, FAD-containing subunit K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Prede_1464 menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Prede_1465 succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Prede_1463 succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Prede_2229 cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Prede_2230 cytochrome bd-type quinol oxidase, subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Prede_2651 proton translocating ATP synthase, F1 alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Prede_2643 ATP synthase, F1 beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Prede_2652 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Prede_2650 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Prede_2644 ATP synthase, F1 epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Prede_2647 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Prede_2649 ATP synthase, F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Prede_2648 ATP synthase, F0 subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:pdt00710] D Prede_0400 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Prede_2155 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Prede_0276 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Prede_0600 hypothetical protein K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D Prede_1738 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Prede_1739 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Prede_2151 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Prede_1281 ATP-dependent phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Prede_0485 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Prede_0531 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Prede_0197 malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:pdt00720] D Prede_0807 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Prede_0485 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Prede_1608 pyruvate/oxaloacetate carboxyltransferase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D Prede_0197 malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Prede_1530 hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Prede_1464 menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Prede_1465 succinate dehydrogenase/fumarate reductase, Fe-S protein subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Prede_1463 succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Prede_1278 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Prede_1279 2-oxoacid:ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Prede_1103 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Prede_2249 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Prede_0959 formyltetrahydrofolate synthetase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Prede_0820 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Prede_0311 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Prede_0133 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Prede_0134 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Prede_0152 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:pdt00680] D Prede_0759 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Prede_0543 lactate dehydrogenase-like oxidoreductase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Prede_0704 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Prede_0197 malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Prede_0276 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Prede_0600 hypothetical protein K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D Prede_2642 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Prede_0134 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Prede_0133 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Prede_0152 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Prede_0342 fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Prede_0083 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Prede_2298 putative homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Prede_0569 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Prede_0570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Prede_0517 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:pdt00910] D Prede_0219 formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Prede_0218 cytochrome c nitrate reductase, small subunit K15876 nrfH; cytochrome c nitrite reductase small subunit D Prede_0268 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Prede_0792 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Prede_1162 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1543 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1640 NADPH-dependent glutamate synthase, homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Prede_0787 NADPH-dependent glutamate synthase beta chain-like oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism [PATH:pdt00920] D Prede_0472 exopolyphosphatase-like enzyme K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D Prede_1701 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Prede_2112 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Prede_1100 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Prede_0975 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Prede_2089 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:pdt00061] D Prede_1008 acyl carrier protein K02078 acpP; acyl carrier protein D Prede_1406 acyl carrier protein K02078 acpP; acyl carrier protein D Prede_2195 acyl carrier protein K02078 acpP; acyl carrier protein D Prede_2198 hypothetical protein K02078 acpP; acyl carrier protein D Prede_2261 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Prede_2197 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Prede_2193 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Prede_1089 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Prede_1405 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Prede_2095 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Prede_0553 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D Prede_1165 enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Prede_0533 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0534 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0119 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0725 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D Prede_0533 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0534 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0119 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0725 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:pdt00561] D Prede_0495 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Prede_1307 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1308 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_2024 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1617 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1618 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:pdt00564] D Prede_1512 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Prede_0495 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Prede_0892 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Prede_0382 phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Prede_0383 phosphatidylserine decarboxylase precursor-related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Prede_1182 haloacid dehalogenase superfamily protein, subfamily IB, phosphoserine phosphatase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27] D Prede_1926 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Prede_0911 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:pdt00600] D Prede_0791 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1157 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1721 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1042 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1036 BNR/Asp-box repeat protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D Prede_1307 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1308 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_2024 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1617 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1618 hypothetical protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D Prede_1035 N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Prede_0866 N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:pdt00230] D Prede_0482 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Prede_1717 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Prede_0414 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Prede_2327 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Prede_1704 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Prede_0448 formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D Prede_1109 phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain protein K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Prede_0629 phosphoribosylaminoimidazole (AIR) synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Prede_1415 phosphoribosylaminoimidazole carboxylase, PurE protein K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Prede_0626 phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Prede_1066 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Prede_0285 AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Prede_1461 PRPP-binding protein, adenine/guanine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Prede_0289 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Prede_0894 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Prede_1993 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Prede_0282 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Prede_0279 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Prede_1076 inosine-5''-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Prede_1368 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Prede_1667 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D Prede_2340 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Prede_1197 cytosine/adenosine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D Prede_1176 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Prede_2712 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Prede_2106 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Prede_0110 deoxyguanosinetriphosphate triphosphohydrolase, putative K01129 dgt; dGTPase [EC:3.1.5.1] D Prede_0515 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Prede_0899 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Prede_0122 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Prede_0561 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Prede_0697 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74] D Prede_0698 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74] D Prede_0583 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Prede_0280 adenylate kinase-like kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:pdt00240] D Prede_2329 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Prede_2328 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Prede_0757 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Prede_0758 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Prede_0492 dihydroorotase-like cyclic amidohydrolase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Prede_0859 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Prede_0858 2-polyprenylphenol hydroxylase-like oxidoreductase K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Prede_1210 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Prede_0631 orotidine 5''-phosphate decarboxylase, subfamily 2 K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Prede_1629 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Prede_0508 MAF protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Prede_0502 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Prede_1549 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Prede_0338 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D Prede_1277 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D Prede_0289 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Prede_0894 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Prede_1642 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D Prede_1280 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Prede_0583 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Prede_0644 cytidine deaminase, homotetrameric K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Prede_2106 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Prede_2712 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Prede_0697 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74] D Prede_0698 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74] D Prede_2337 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Prede_0111 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Prede_1623 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D Prede_1189 alternative thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:pdt00250] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_2324 L-asparaginase type I family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Prede_0487 aspartate--ammonia ligase, AsnA-type K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D Prede_0842 putative amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3] D Prede_1746 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Prede_0159 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Prede_1212 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Prede_0561 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Prede_1066 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Prede_0757 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Prede_0758 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Prede_1640 NADPH-dependent glutamate synthase, homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Prede_0787 NADPH-dependent glutamate synthase beta chain-like oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Prede_0268 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Prede_0792 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Prede_1162 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1543 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_2329 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Prede_2328 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Prede_1752 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Prede_2327 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:pdt00260] D Prede_0596 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Prede_2299 aspartokinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Prede_1060 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Prede_2297 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Prede_0148 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Prede_0759 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Prede_0543 lactate dehydrogenase-like oxidoreductase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Prede_0342 fructose-2,6-bisphosphatase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Prede_0083 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Prede_2298 putative homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Prede_0569 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Prede_0570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Prede_0517 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Prede_1943 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Prede_1944 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Prede_1941 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Prede_1942 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Prede_0382 phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Prede_0918 L-serine deaminase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Prede_2064 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Prede_2063 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Prede_0429 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:pdt00270] D Prede_1701 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Prede_2112 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Prede_1100 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Prede_0975 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Prede_0191 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Prede_1613 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Prede_0762 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Prede_1329 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Prede_2703 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Prede_0282 uncharacterized protein, YfiH family K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Prede_0328 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Prede_2704 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Prede_0596 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Prede_2299 aspartokinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Prede_1060 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Prede_2089 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Prede_1612 O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Prede_2343 OAH/OAS sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Prede_0441 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0197 malate/lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Prede_0918 L-serine deaminase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Prede_0569 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Prede_0570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:pdt00280] D Prede_0441 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pdt00290] D Prede_0774 isopropylmalate/homocitrate/citramalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21] D Prede_0776 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Prede_0775 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Prede_0773 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Prede_0816 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Prede_0815 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Prede_0813 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Prede_0817 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Prede_0441 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Prede_0777 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:pdt00300] D Prede_0596 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Prede_2299 aspartokinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Prede_1060 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Prede_1890 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Prede_1497 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Prede_0156 ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Prede_0824 aspartate/tyrosine/aromatic aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Prede_0597 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Prede_0951 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16] D Prede_0103 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Prede_0128 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Prede_2705 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] C 00310 Lysine degradation D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00220 Arginine biosynthesis [PATH:pdt00220] D Prede_0159 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Prede_1212 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Prede_1162 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1543 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_2329 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Prede_2328 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Prede_0268 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Prede_0792 glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0025 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Prede_0157 N-acetyl-gamma-glutamyl-phosphate reductase, common form K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Prede_0156 ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Prede_0115 acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:pdt00330] D Prede_1041 uncharacterized protein, putative amidase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D Prede_0026 arginine decarboxylase, biosynthetic K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Prede_1567 putative amidohydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D Prede_0637 acetyltransferase, ribosomal protein N-acetylase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D Prede_0154 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Prede_0151 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Prede_0150 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0416 carboxynorspermidine decarboxylase K27684 capadc; carboxyaminopropylagmatine decarboxylase [EC:4.1.1.127] C 00340 Histidine metabolism [PATH:pdt00340] D Prede_0672 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Prede_0594 phosphoribosyl-ATP pyrophosphohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D Prede_0592 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Prede_0591 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Prede_0593 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Prede_1796 histidinol-phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D Prede_0674 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Prede_0673 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:pdt00350] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0674 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00360 Phenylalanine metabolism [PATH:pdt00360] D Prede_1274 coenzyme F390 synthetase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Prede_0848 hypothetical protein K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0674 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pdt00400] D Prede_1593 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Prede_1333 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Prede_0027 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Prede_0378 5-enolpyruvylshikimate-3-phosphate synthase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Prede_0861 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Prede_2062 anthranilate/para-aminobenzoate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Prede_2061 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Prede_2067 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Prede_2065 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Prede_2066 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Prede_2064 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Prede_2063 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Prede_0429 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Prede_0823 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase K04516 AROA1; chorismate mutase [EC:5.4.99.5] D Prede_0825 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0674 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:pdt00430] D Prede_1746 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Prede_0133 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Prede_0134 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism D Prede_0479 metal-dependent hydrolase, beta-lactamase superfamily I K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:pdt00450] D Prede_0191 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Prede_1613 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Prede_0762 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Prede_0073 cysteine desulfurase-like protein, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Prede_0432 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Prede_1192 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:pdt00460] D Prede_1835 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_1842 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_2178 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_2324 L-asparaginase type I family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Prede_0487 aspartate--ammonia ligase, AsnA-type K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D Prede_0759 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:pdt00470] D Prede_2705 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] D Prede_0145 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Prede_1290 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Prede_0101 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Prede_0597 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:pdt00480] D Prede_0324 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Prede_2270 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Prede_1103 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Prede_0433 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Prede_0766 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:pdt00511] D Prede_1036 BNR/Asp-box repeat protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D Prede_0791 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1157 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1721 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1042 beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Prede_1035 N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Prede_0866 N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Prede_1314 beta-galactosidase/beta-glucuronidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] D Prede_1633 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D Prede_1004 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D Prede_0088 hypothetical protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51] C 00540 Lipopolysaccharide biosynthesis [PATH:pdt00540] D Prede_0554 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Prede_0553 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D Prede_0552 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Prede_0137 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Prede_0893 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Prede_1994 tetraacyldisaccharide 4''-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Prede_1925 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Prede_1924 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Prede_0507 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Prede_0679 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Prede_0190 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Prede_1395 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Prede_1312 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Prede_1178 putative membrane-associated, metal-dependent hydrolase K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-] D Prede_1410 ADP-heptose:LPS heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis [PATH:pdt00542] D Prede_0350 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pdt00541] D Prede_0683 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Prede_2217 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Prede_1978 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Prede_2042 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Prede_1662 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Prede_2126 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Prede_2142 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Prede_0353 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D Prede_1660 phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Prede_0474 phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Prede_1217 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_1722 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_1661 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Prede_2125 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Prede_2124 nucleoside-diphosphate-sugar epimerase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Prede_0837 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:pdt00550] D Prede_1172 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Prede_0478 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Prede_0098 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Prede_0101 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Prede_0103 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Prede_0145 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Prede_0128 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Prede_2705 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] D Prede_1285 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Prede_2677 putative bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_2317 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_2635 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_0102 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Prede_0099 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Prede_1742 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Prede_0556 membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Prede_0756 membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Prede_0305 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Prede_0104 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Prede_1979 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Prede_0928 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:pdt00552] D Prede_2677 putative bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_2317 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_2635 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_0350 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Prede_2121 LPS biosynthesis protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-] D Prede_1201 LPS biosynthesis protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:pdt00543] D Prede_0352 glycosyltransferase K13684 wcaC; putative colanic acid biosynthesis glycosyltransferase WcaC [EC:2.4.-.-] D Prede_0350 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Prede_1009 putative membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI D Prede_1701 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Prede_2112 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Prede_1100 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:pdt00730] D Prede_1751 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Prede_0956 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Prede_0743 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Prede_0415 thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Prede_1992 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Prede_0330 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Prede_0280 adenylate kinase-like kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:pdt00740] D Prede_0299 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Prede_1206 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Prede_1689 haloacid dehalogenase superfamily enzyme, subfamily IA K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D Prede_2331 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Prede_1862 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Prede_0018 riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Prede_2711 nitroreductase K19286 nfrA2; FMN reductase [NAD(P)H] [EC:1.5.1.39] D Prede_0482 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:pdt00750] D Prede_1219 pyridoxal/pyridoxine/pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D Prede_0570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Prede_0874 pyridoxal phosphate biosynthesis protein K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Prede_2297 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Prede_1750 pyridoxal 5''-phosphate synthase, synthase subunit Pdx1 K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D Prede_1749 pyridoxal 5''-phosphate synthase, glutaminase subunit Pdx2 K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:pdt00760] D Prede_0036 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Prede_1993 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Prede_0289 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Prede_0894 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Prede_1177 nicotinate/nicotinamide nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Prede_0584 Zn-finger containing NTP pyrophosphohydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D Prede_2320 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Prede_0765 competence/damage-inducible protein CinA-like protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Prede_1636 nicotinamidase-like amidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D Prede_1421 NAD-dependent protein deacetylase, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Prede_1132 putative sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:pdt00770] D Prede_0816 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Prede_0815 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Prede_0813 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Prede_0817 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Prede_2306 pantothenate kinase, acetyl-CoA regulated K09680 PANK1_2_3; type II pantothenate kinase [EC:2.7.1.33] D Prede_1474 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Prede_1602 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Prede_0424 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D Prede_0441 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism [PATH:pdt00780] D Prede_1405 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Prede_2095 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Prede_1165 enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Prede_0793 7-keto-8-aminopelargonate synthetase-like enzyme K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Prede_1628 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:pdt00785] D Prede_1940 lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Prede_1943 glycine cleavage system protein P K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Prede_1944 glycine cleavage system protein P K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Prede_1941 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Prede_1942 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:pdt00790] D Prede_2660 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Prede_2713 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Prede_2680 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Prede_2219 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Prede_0131 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Prede_1560 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Prede_1727 folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Prede_0299 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Prede_0401 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Prede_1606 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] C 00670 One carbon pool by folate [PATH:pdt00670] D Prede_1560 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Prede_0959 formyltetrahydrofolate synthetase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Prede_0820 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Prede_0759 glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Prede_0285 AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Prede_2045 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Prede_1941 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Prede_0762 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Prede_1189 alternative thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Prede_0590 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Prede_0311 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Prede_2335 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:pdt00860] D Prede_0189 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Prede_1327 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Prede_0888 protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D Prede_0782 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pdt00130] D Prede_1587 isochorismate synthase family protein K02361 entC; isochorismate synthase [EC:5.4.4.2] D Prede_1588 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D Prede_2111 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D Prede_1592 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D Prede_1589 dihydroxynaphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D Prede_0772 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:pdt00900] D Prede_0956 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Prede_0743 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Prede_1170 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Prede_1135 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Prede_1199 4-diphosphocytidyl-2-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Prede_0779 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Prede_1141 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Prede_1414 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Prede_1540 (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Prede_1552 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Prede_1455 geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Prede_1285 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Prede_1738 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:pdt00523] D Prede_2042 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Prede_1662 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Prede_2126 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Prede_2142 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D Prede_1587 isochorismate synthase family protein K02361 entC; isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D Prede_1662 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:pdt00946] D Prede_1835 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_1842 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_2178 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_0395 glycogen debranching enzyme K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40] D Prede_1293 alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40] D Prede_1315 alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40] D Prede_1837 glycogen debranching enzyme K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:pdt00332] D Prede_0151 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Prede_0150 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:pdt00261] D Prede_0596 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Prede_2299 aspartokinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Prede_1060 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Prede_1890 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Prede_1497 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:pdt00521] D Prede_2046 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1313 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1717 phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Prede_2042 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Prede_1662 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Prede_2126 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Prede_2142 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Prede_2046 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] D Prede_1313 transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:pdt00525] D Prede_2042 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Prede_1662 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:pdt00401] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0674 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Prede_2062 anthranilate/para-aminobenzoate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Prede_2061 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Prede_2261 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Prede_2095 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Prede_1165 enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Prede_1008 acyl carrier protein K02078 acpP; acyl carrier protein D Prede_1406 acyl carrier protein K02078 acpP; acyl carrier protein D Prede_2195 acyl carrier protein K02078 acpP; acyl carrier protein D Prede_2198 hypothetical protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:pdt00999] D Prede_1329 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Prede_1835 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_1842 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Prede_2178 beta-glucosidase-like glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D Prede_1527 acetyl/propionyl-CoA carboxylase, alpha subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:pdt03020] D Prede_0214 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Prede_0215 DNA-directed RNA polymerase, beta' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Prede_0264 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:pdt03010] D Prede_0406 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Prede_1147 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Prede_0243 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3 D Prede_0263 ribosomal protein S4, bacterial/organelle type K02986 RP-S4; small subunit ribosomal protein S4 D Prede_0254 ribosomal protein S5, bacterial/organelle type K02988 RP-S5; small subunit ribosomal protein S5 D Prede_2258 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Prede_0234 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7 D Prede_0251 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Prede_1148 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Prede_0236 ribosomal protein S10, bacterial/organelle K02946 RP-S10; small subunit ribosomal protein S10 D Prede_0262 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Prede_0233 ribosomal protein S12, bacterial/organelle K02950 RP-S12; small subunit ribosomal protein S12 D Prede_0261 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Prede_0250 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Prede_2681 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Prede_0681 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Prede_0246 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Prede_2259 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Prede_0241 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19 D Prede_0091 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Prede_0199 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Prede_0211 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Prede_0240 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2 D Prede_0237 50S ribosomal protein L3, bacterial K02906 RP-L3; large subunit ribosomal protein L3 D Prede_0238 50S ribosomal protein L4, bacterial/organelle K02926 RP-L4; large subunit ribosomal protein L4 D Prede_0249 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Prede_0252 ribosomal protein L6, bacterial type K02933 RP-L6; large subunit ribosomal protein L6 D Prede_0213 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Prede_2260 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Prede_0212 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Prede_0210 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Prede_1149 ribosomal protein L13, bacterial type K02871 RP-L13; large subunit ribosomal protein L13 D Prede_0247 ribosomal protein L14, bacterial/organelle K02874 RP-L14; large subunit ribosomal protein L14 D Prede_0256 ribosomal protein L15, bacterial/organelle K02876 RP-L15; large subunit ribosomal protein L15 D Prede_0244 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16 D Prede_0265 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Prede_0253 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18 D Prede_0287 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Prede_2148 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Prede_1956 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Prede_0242 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22 D Prede_0239 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D Prede_0248 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24 D Prede_1598 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D Prede_1957 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Prede_2321 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Prede_0245 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Prede_0255 ribosomal protein L30, bacterial/organelle K02907 RP-L30; large subunit ribosomal protein L30 D Prede_0332 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Prede_1090 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Prede_2322 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Prede_0142 ribosomal protein L34, bacterial type K02914 RP-L34; large subunit ribosomal protein L34 D Prede_2147 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Prede_0260 ribosomal protein L36, bacterial type K02919 RP-L36; large subunit ribosomal protein L36 D Prede_0171 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0464 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_1098 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_2232 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0755 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0174 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_0467 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_1095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_0752 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_2235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_0175 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_2236 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_0751 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_1094 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_0468 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:pdt00970] D Prede_0466 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_0753 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_0173 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_1096 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_2234 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_2266 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_0486 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_2267 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_0396 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_1442 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_0057 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Prede_0635 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Prede_0636 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Prede_1797 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Prede_0889 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Prede_1322 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Prede_1680 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Prede_1679 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Prede_0092 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Prede_0417 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_0420 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_1240 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_0525 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_0204 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_0880 tRNA-His K14226 tRNA-His; tRNA His D Prede_0172 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_1097 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_0465 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_2233 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_0754 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_1016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_1229 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_1239 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_0418 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_0419 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_1927 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Prede_1928 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Prede_2390 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Prede_2351 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_0020 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_2097 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_2500 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_2589 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_0127 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Prede_1991 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Prede_0376 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Prede_2348 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Prede_0126 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Prede_0566 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Prede_1554 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Prede_1678 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Prede_2631 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Prede_0524 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Prede_0202 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Prede_2071 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Prede_0205 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Prede_0207 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Prede_0203 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Prede_1988 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Prede_1067 tRNA-Val K14237 tRNA-Val; tRNA Val D Prede_1068 tRNA-Val K14237 tRNA-Val; tRNA Val D Prede_1754 tRNA-Val K14237 tRNA-Val; tRNA Val D Prede_0189 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Prede_1961 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Prede_0903 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Prede_2658 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Prede_1064 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Prede_1006 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Prede_1708 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Prede_1639 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Prede_1295 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Prede_1192 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Prede_2045 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Prede_2276 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Prede_1366 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Prede_2015 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Prede_1511 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Prede_1258 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Prede_1744 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Prede_0560 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Prede_0476 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Prede_0541 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Prede_1324 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Prede_1441 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:pdt03060] D Prede_0257 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Prede_0208 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Prede_0879 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Prede_1305 protein-export membrane protein, SecD/SecF family K12257 secDF; SecD/SecF fusion protein D Prede_1600 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Prede_0501 membrane protein insertase, YidC/Oxa1 family, N-terminal domain protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Prede_1970 preprotein translocase subunit SecA (ATPase, RNA helicase) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Prede_0821 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Prede_2072 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA D Prede_0613 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Prede_2638 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D Prede_2637 twin arginine targeting protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D Prede_1498 hypothetical protein K03100 lepB; signal peptidase I [EC:3.4.21.89] D Prede_1499 hypothetical protein K03100 lepB; signal peptidase I [EC:3.4.21.89] D Prede_2017 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Prede_1785 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system C 03050 Proteasome C 03018 RNA degradation [PATH:pdt03018] D Prede_0704 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Prede_0033 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Prede_1685 DNA/RNA helicase, superfamily II K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Prede_1376 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Prede_1506 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Prede_0812 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Prede_1077 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Prede_0405 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Prede_2000 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D Prede_2642 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Prede_0985 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Prede_2168 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Prede_2666 putative domain HDIG-containing protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:pdt03030] D Prede_0603 DNA polymerase III, alpha subunit (gram-positive type) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_2350 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_0384 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Prede_0488 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Prede_0310 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Prede_0856 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Prede_0602 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Prede_0778 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Prede_0913 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101] D Prede_2457 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101] D Prede_0422 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Prede_1259 putative double-stranded RNA/RNA-DNA hybrid binding protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Prede_0074 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:pdt03410] D Prede_2273 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Prede_0084 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Prede_1191 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Prede_2672 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Prede_2659 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Prede_0811 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:pdt03420] D Prede_0497 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Prede_1911 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Prede_1789 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Prede_2288 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Prede_1460 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Prede_1536 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Prede_1741 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:pdt03430] D Prede_1430 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Prede_2632 mismatch repair ATPase (MutS family) K07456 mutS2; DNA mismatch repair protein MutS2 D Prede_1071 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Prede_1536 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Prede_1741 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Prede_0443 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Prede_0442 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Prede_0811 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Prede_0422 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Prede_0384 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Prede_0602 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Prede_0488 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Prede_0856 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Prede_0310 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Prede_0603 DNA polymerase III, alpha subunit (gram-positive type) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_2350 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Prede_0341 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Prede_2010 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:pdt03440] D Prede_0811 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Prede_0422 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Prede_2333 recF protein K03629 recF; DNA replication and repair protein RecF D Prede_0093 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Prede_0640 recombination protein RecR K06187 recR; recombination protein RecR D Prede_0960 protein RecA K03553 recA; recombination protein RecA D Prede_0950 Holliday junction DNA helicase, RuvA subunit K03550 ruvA; holliday junction DNA helicase RuvA D Prede_0001 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Prede_0650 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Prede_1136 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Prede_1081 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Prede_0384 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Prede_0602 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Prede_0488 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Prede_0856 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Prede_0310 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Prede_0603 DNA polymerase III, alpha subunit (gram-positive type) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_2350 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_0184 primosomal protein N'' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:pdt02010] D Prede_0651 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA K05776 modF; molybdate transport system ATP-binding protein D Prede_2715 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Prede_1083 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Prede_1085 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Prede_0535 ABC-type transport system, involved in lipoprotein release, permease component K09808 lolC_E; lipoprotein-releasing system permease protein D Prede_1292 ABC-type transport system, involved in lipoprotein release, permease component K09808 lolC_E; lipoprotein-releasing system permease protein D Prede_1062 ABC-type antimicrobial peptide transport system, ATPase component K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Prede_0300 putative permease K07091 lptF; lipopolysaccharide export system permease protein D Prede_0798 putative permease K11720 lptG; lipopolysaccharide export system permease protein D Prede_1082 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Prede_2675 cell division protein K09811 ftsX; cell division transport system permease protein D Prede_0595 putative ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D Prede_0361 ABC-type multidrug transport system, ATPase and permease component K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Prede_1848 ABC-type multidrug transport system, ATPase and permease component K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Prede_0362 ABC-type multidrug transport system, ATPase and permease component K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Prede_1849 ABC-type multidrug transport system, ATPase and permease component K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Prede_1394 ABC-type multidrug transport system, ATPase and permease component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] C 02060 Phosphotransferase system (PTS) D Prede_2706 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component C 03070 Bacterial secretion system [PATH:pdt03070] D Prede_1861 outer membrane protein K12340 tolC; outer membrane protein D Prede_0716 outer membrane protein K12340 tolC; outer membrane protein D Prede_0319 outer membrane protein K12340 tolC; outer membrane protein D Prede_1305 protein-export membrane protein, SecD/SecF family K12257 secDF; SecD/SecF fusion protein D Prede_0208 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Prede_0879 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Prede_0257 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Prede_1600 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Prede_0501 membrane protein insertase, YidC/Oxa1 family, N-terminal domain protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Prede_1970 preprotein translocase subunit SecA (ATPase, RNA helicase) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Prede_0613 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Prede_0821 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Prede_2638 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D Prede_2637 twin arginine targeting protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:pdt02020] D Prede_2255 signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Prede_1782 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107] D Prede_1508 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Prede_1162 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1543 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1417 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D Prede_2078 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Prede_2229 cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Prede_2230 cytochrome bd-type quinol oxidase, subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Prede_1861 outer membrane protein K12340 tolC; outer membrane protein D Prede_0716 outer membrane protein K12340 tolC; outer membrane protein D Prede_0319 outer membrane protein K12340 tolC; outer membrane protein D Prede_2326 periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein D Prede_1976 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D Prede_2043 capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D Prede_0837 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Prede_0900 pectin methylesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D Prede_2171 endoglucanase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D Prede_1050 RNA polymerase sigma-70 factor, bacteroides expansion family 1 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D Prede_0742 RNA polymerase sigma-70 factor, bacteroides expansion family 1 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D Prede_1982 Fe2+-dicitrate sensor, membrane component K07165 fecR; transmembrane sensor D Prede_0195 Fe2+-dicitrate sensor, membrane component K07165 fecR; transmembrane sensor D Prede_1051 Fe2+-dicitrate sensor, membrane component K07165 fecR; transmembrane sensor D Prede_2036 Fe2+-dicitrate sensor, membrane component K07165 fecR; transmembrane sensor C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:pdt02024] D Prede_2704 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Prede_2062 anthranilate/para-aminobenzoate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Prede_2061 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Prede_0533 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0534 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0119 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0725 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_2078 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Prede_1206 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Prede_2669 efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Prede_0501 membrane protein insertase, YidC/Oxa1 family, N-terminal domain protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Prede_1305 protein-export membrane protein, SecD/SecF family K12257 secDF; SecD/SecF fusion protein D Prede_0208 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Prede_0879 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Prede_0257 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Prede_1600 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Prede_1970 preprotein translocase subunit SecA (ATPase, RNA helicase) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Prede_0613 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Prede_0821 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D Prede_1104 flagellar motor protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:pdt02040] D Prede_1104 flagellar motor protein K02557 motB; chemotaxis protein MotB D Prede_0483 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Prede_1777 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Prede_0694 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Prede_2021 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Prede_1417 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Prede_0704 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:pdt04980] D Prede_0782 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Prede_0762 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:pdt01501] D Prede_0737 arabinose efflux permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Prede_0869 Major Facilitator Superfamily transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Prede_1055 arabinose efflux permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Prede_2667 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Prede_2669 efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Prede_1861 outer membrane protein K12340 tolC; outer membrane protein D Prede_0716 outer membrane protein K12340 tolC; outer membrane protein D Prede_0319 outer membrane protein K12340 tolC; outer membrane protein D Prede_0556 membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Prede_0756 membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Prede_0305 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Prede_0104 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:pdt01502] D Prede_0145 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Prede_2705 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] D Prede_0128 UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Prede_0102 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Prede_0099 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pdt01503] D Prede_2714 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Prede_1782 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107] D Prede_2667 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Prede_1861 outer membrane protein K12340 tolC; outer membrane protein D Prede_0716 outer membrane protein K12340 tolC; outer membrane protein D Prede_0319 outer membrane protein K12340 tolC; outer membrane protein D Prede_0554 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:pdt01000] C 01001 Protein kinases [BR:pdt01001] D Prede_0699 protein kinase family protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Prede_0143 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Prede_2043 capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D Prede_2255 signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Prede_0043 signal transduction histidine kinase K19694 chiS; two-component system, sensor histidine kinase ChiS C 01009 Protein phosphatases and associated proteins [BR:pdt01009] D Prede_2642 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Prede_2272 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG D Prede_0517 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:pdt01002] D Prede_2017 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Prede_0955 aminopeptidase C K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D Prede_2340 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Prede_2327 glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Prede_1752 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Prede_1134 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D Prede_2281 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D Prede_0017 putative metal-dependent membrane protease K07052 K07052; CAAX protease family protein D Prede_1002 putative protease of the Abi (CAAX) family K07052 K07052; CAAX protease family protein D Prede_0747 CAAX amino terminal protease family K07052 K07052; CAAX protease family protein D Prede_2338 Zn-dependent oligopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Prede_0081 M6 family metalloprotease domain-containing protein K09607 ina; immune inhibitor A [EC:3.4.24.-] D Prede_1003 putative metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Prede_2090 putative metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Prede_2051 hypothetical protein K08640 E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D Prede_1330 putative Zn-dependent peptidase K07263 pqqL; zinc protease [EC:3.4.24.-] D Prede_1676 putative Zn-dependent peptidase K07263 pqqL; zinc protease [EC:3.4.24.-] D Prede_1615 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Prede_0324 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Prede_2270 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Prede_0258 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Prede_0763 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Prede_0809 Xaa-Pro aminopeptidase K14213 PEPD; Xaa-Pro dipeptidase [EC:3.4.13.9] D Prede_0198 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Prede_0891 ATP-dependent metalloprotease FtsH K08956 AFG3; AFG3 family protein [EC:3.4.24.-] D Prede_2307 Peptidase family M49 K01277 DPP3; dipeptidyl-peptidase III [EC:3.4.14.4] D Prede_1169 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Prede_1989 putative membrane protein K24131 prsW; protease PrsW [EC:3.4.-.-] D Prede_1782 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107] D Prede_1133 serine protease, S9A family peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D Prede_1703 dipeptidyl aminopeptidase/acylaminoacyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Prede_1788 dipeptidyl aminopeptidase/acylaminoacyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Prede_1979 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Prede_0928 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Prede_1079 protease subunit of ATP-dependent protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Prede_0796 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Prede_1498 hypothetical protein K03100 lepB; signal peptidase I [EC:3.4.21.89] D Prede_1499 hypothetical protein K03100 lepB; signal peptidase I [EC:3.4.21.89] D Prede_1785 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D Prede_0058 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Prede_2336 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Prede_1471 C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Prede_1995 signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-] D Prede_1303 putative membrane protein K07059 K07059; rhomboid family protein D Prede_1354 phage prohead protease, HK97 family K06904 GP4; Escherichia/Staphylococcus phage prohead protease D Prede_1439 collagenase-like protease K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Prede_2088 collagenase-like protease K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase C 01003 Glycosyltransferases [BR:pdt01003] D Prede_0496 glycosyl transferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D Prede_2160 glycosyltransferase K16150 K16150; glycogen synthase [EC:2.4.1.11] D Prede_1526 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D Prede_1742 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Prede_0556 membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Prede_0756 membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Prede_0352 glycosyltransferase K13684 wcaC; putative colanic acid biosynthesis glycosyltransferase WcaC [EC:2.4.-.-] D Prede_0350 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:pdt01005] D Prede_0554 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Prede_0893 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Prede_0553 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D Prede_0552 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Prede_0137 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Prede_1994 tetraacyldisaccharide 4''-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Prede_1395 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Prede_0190 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Prede_1924 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Prede_0679 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Prede_0507 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Prede_1925 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Prede_1410 ADP-heptose:LPS heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D Prede_1178 putative membrane-associated, metal-dependent hydrolase K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-] D Prede_1312 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Prede_0356 hypothetical protein K26858 wzy; O-antigen polymerase [EC:2.4.99.27] D Prede_0350 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pdt01011] D Prede_1172 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Prede_0478 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Prede_0098 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Prede_0101 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Prede_0103 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Prede_2705 alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] D Prede_0145 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Prede_1290 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Prede_0102 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Prede_0099 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Prede_2677 putative bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_2317 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_2635 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D Prede_0556 membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Prede_0756 membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Prede_0305 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Prede_0104 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Prede_1979 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Prede_0928 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Prede_1742 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Prede_2281 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D Prede_2051 hypothetical protein K08640 E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D Prede_0898 soluble lytic murein transglycosylase-like protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Prede_0671 putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D Prede_1960 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Prede_0267 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Prede_2714 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:pdt01004] D Prede_2261 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Prede_2197 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Prede_2193 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Prede_1089 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Prede_1405 beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Prede_2095 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Prede_0553 beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D Prede_1165 enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Prede_0152 acyl-CoA synthetase/AMP-acid ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Prede_0533 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0534 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0119 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0725 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0495 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:pdt01006] D Prede_1552 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Prede_1455 geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Prede_1285 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Prede_0555 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Prede_2156 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Prede_0772 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Prede_1181 4-hydroxybenzoate polyprenyltransferase-like prenyltransferase K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45] C 01007 Amino acid related enzymes [BR:pdt01007] D Prede_0189 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Prede_1961 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Prede_1324 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Prede_1441 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Prede_1295 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Prede_1258 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Prede_1192 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Prede_2015 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Prede_2276 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Prede_1366 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Prede_1511 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Prede_2658 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Prede_1064 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Prede_0560 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Prede_1006 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Prede_1639 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Prede_1744 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Prede_1708 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Prede_0903 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Prede_0476 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Prede_0541 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Prede_0536 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0298 aspartate/tyrosine/aromatic aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Prede_0824 aspartate/tyrosine/aromatic aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Prede_0674 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Prede_0793 7-keto-8-aminopelargonate synthetase-like enzyme K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Prede_0191 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Prede_1613 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Prede_0156 ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Prede_0441 branched-chain amino acid aminotransferase, group II K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Prede_0570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Prede_0353 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:pdt00194] D Prede_2644 ATP synthase, F1 epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Prede_2643 ATP synthase, F1 beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Prede_2652 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Prede_2651 proton translocating ATP synthase, F1 alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Prede_2650 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Prede_2649 ATP synthase, F0 subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Prede_2648 ATP synthase, F0 subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Prede_2647 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:pdt03000] D Prede_1385 DNA-binding domain-containing protein, AraC-type K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Prede_1897 DNA-binding domain-containing protein, AraC-type K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Prede_0013 DNA-binding domain-containing protein, AraC-type K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Prede_0086 DNA-binding domain-containing protein, AraC-type K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Prede_2375 DNA-binding domain-containing protein, AraC-type K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Prede_0271 DNA-binding domain-containing protein, AraC-type K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Prede_1700 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Prede_0346 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Prede_1873 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Prede_1939 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Prede_1316 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Prede_2005 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Prede_1118 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D Prede_1847 transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D Prede_1559 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Prede_1425 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Prede_0767 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Prede_0562 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Prede_1190 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Prede_0557 Fe2+/Zn2+ uptake regulation protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D Prede_2078 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Prede_1628 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Prede_0896 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Prede_0161 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D Prede_0158 putative stress-responsive transcriptional regulator K03973 pspC; phage shock protein C D Prede_2016 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Prede_0107 hypothetical protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:pdt03021] D Prede_0264 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Prede_0214 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Prede_0215 DNA-directed RNA polymerase, beta' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Prede_0483 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Prede_1777 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Prede_0694 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Prede_2021 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Prede_0024 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Prede_1050 RNA polymerase sigma-70 factor, bacteroides expansion family 1 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D Prede_0742 RNA polymerase sigma-70 factor, bacteroides expansion family 1 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D Prede_1417 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D Prede_0068 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Prede_1599 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D Prede_0209 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D Prede_2016 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Prede_1215 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Prede_0405 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:pdt03019] D Prede_2263 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Prede_1404 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Prede_2000 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D Prede_1376 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Prede_1685 DNA/RNA helicase, superfamily II K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Prede_1506 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Prede_0812 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Prede_1077 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Prede_0704 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Prede_0033 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Prede_0405 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Prede_2642 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Prede_0985 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Prede_2168 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Prede_2666 putative domain HDIG-containing protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] C 03041 Spliceosome C 03011 Ribosome [BR:pdt03011] D Prede_0406 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Prede_1147 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Prede_0243 ribosomal protein S3, bacterial type K02982 RP-S3; small subunit ribosomal protein S3 D Prede_0263 ribosomal protein S4, bacterial/organelle type K02986 RP-S4; small subunit ribosomal protein S4 D Prede_0254 ribosomal protein S5, bacterial/organelle type K02988 RP-S5; small subunit ribosomal protein S5 D Prede_2258 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Prede_0234 ribosomal protein S7, bacterial/organelle K02992 RP-S7; small subunit ribosomal protein S7 D Prede_0251 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Prede_1148 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Prede_0236 ribosomal protein S10, bacterial/organelle K02946 RP-S10; small subunit ribosomal protein S10 D Prede_0262 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Prede_0233 ribosomal protein S12, bacterial/organelle K02950 RP-S12; small subunit ribosomal protein S12 D Prede_0261 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Prede_0250 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Prede_2681 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Prede_0681 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Prede_0246 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Prede_2259 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Prede_0241 ribosomal protein S19, bacterial/organelle K02965 RP-S19; small subunit ribosomal protein S19 D Prede_0091 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Prede_0199 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Prede_0211 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Prede_0240 ribosomal protein L2, bacterial/organellar K02886 RP-L2; large subunit ribosomal protein L2 D Prede_0237 50S ribosomal protein L3, bacterial K02906 RP-L3; large subunit ribosomal protein L3 D Prede_0238 50S ribosomal protein L4, bacterial/organelle K02926 RP-L4; large subunit ribosomal protein L4 D Prede_0249 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Prede_0252 ribosomal protein L6, bacterial type K02933 RP-L6; large subunit ribosomal protein L6 D Prede_2260 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Prede_0212 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Prede_0210 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Prede_0213 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Prede_1149 ribosomal protein L13, bacterial type K02871 RP-L13; large subunit ribosomal protein L13 D Prede_0247 ribosomal protein L14, bacterial/organelle K02874 RP-L14; large subunit ribosomal protein L14 D Prede_0256 ribosomal protein L15, bacterial/organelle K02876 RP-L15; large subunit ribosomal protein L15 D Prede_0244 ribosomal protein L16, bacterial/organelle K02878 RP-L16; large subunit ribosomal protein L16 D Prede_0265 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Prede_0253 ribosomal protein L18, bacterial type K02881 RP-L18; large subunit ribosomal protein L18 D Prede_0287 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Prede_2148 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Prede_1956 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Prede_0242 ribosomal protein L22, bacterial type K02890 RP-L22; large subunit ribosomal protein L22 D Prede_0239 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D Prede_0248 ribosomal protein L24, bacterial/organelle K02895 RP-L24; large subunit ribosomal protein L24 D Prede_1957 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Prede_2321 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Prede_0245 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Prede_0255 ribosomal protein L30, bacterial/organelle K02907 RP-L30; large subunit ribosomal protein L30 D Prede_0332 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Prede_1090 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Prede_2322 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Prede_0142 ribosomal protein L34, bacterial type K02914 RP-L34; large subunit ribosomal protein L34 D Prede_2147 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Prede_0260 ribosomal protein L36, bacterial type K02919 RP-L36; large subunit ribosomal protein L36 D Prede_1598 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D Prede_0175 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_2236 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_0751 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_1094 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_0468 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_0171 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0464 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_1098 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_2232 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0755 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0174 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_0467 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_1095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_0752 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_2235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:pdt03009] D Prede_1404 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Prede_1088 GTP-binding protein Era K03595 era; GTPase D Prede_0281 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D Prede_2016 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Prede_0068 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Prede_1599 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D Prede_0209 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D Prede_0327 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Prede_0910 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Prede_0664 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Prede_0648 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Prede_0106 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Prede_1624 putative S-adenosylmethionine-dependent methyltransferase, YraL family K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Prede_1719 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Prede_0653 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Prede_1702 putative N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D Prede_0872 23S rRNA m2A2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Prede_0484 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Prede_1188 23S RNA-specific pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Prede_1065 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Prede_0144 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Prede_0660 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Prede_2094 23S RNA-specific pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Prede_1171 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Prede_0612 ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Prede_0609 ribosomal protein L11 methylase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Prede_2263 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Prede_1711 RNAse H-fold protein YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Prede_0571 DNA/RNA helicase, superfamily II K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D Prede_1506 DNA/RNA helicase, superfamily II K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Prede_0330 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Prede_1087 ribosome-associated GTPase EngA K03977 engA; GTPase D Prede_1533 GTP-binding protein HflX K03665 hflX; GTPase D Prede_2047 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Prede_0515 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Prede_0899 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Prede_1291 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Prede_0067 hypothetical protein K09748 rimP; ribosome maturation factor RimP D Prede_0890 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein D Prede_1473 metalloprotein, YbeY/UPF0054 family K07042 ybeY; probable rRNA maturation factor D Prede_0201 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D Prede_1447 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Prede_1091 putative metal-binding protein, possibly nucleic-acid binding protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:pdt03016] D Prede_2279 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D Prede_0189 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Prede_1744 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Prede_2015 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Prede_1366 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Prede_1192 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Prede_1961 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Prede_1258 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Prede_1511 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Prede_2658 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Prede_0903 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Prede_1064 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Prede_1006 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Prede_1708 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Prede_1639 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Prede_1295 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Prede_2276 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Prede_0560 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Prede_0476 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Prede_0541 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Prede_1324 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Prede_1441 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Prede_1459 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Prede_1216 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Prede_1682 putative S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Prede_2636 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D Prede_1888 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Prede_2678 tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Prede_1516 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K21027 TRMU; tRNA-5-taurinomethyluridine 2-sulfurtransferase [EC:2.8.1.14] D Prede_2047 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Prede_0555 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Prede_2156 tRNA isopentenyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Prede_1643 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Prede_1462 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Prede_1326 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Prede_0475 ATP-binding cassette protein, ChvD family K06020 ettA; energy-dependent translational throttle protein EttA D Prede_1626 cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Prede_1479 putative TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Prede_1393 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Prede_0769 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Prede_2301 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Prede_0795 putative O-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D Prede_1794 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family D Prede_1188 23S RNA-specific pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Prede_2679 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Prede_2318 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Prede_0401 queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Prede_1606 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Prede_0512 uncharacterized Fe-S protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Prede_0797 tRNA-guanine transglycosylase, queuosine-34-forming K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Prede_0654 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Prede_1174 universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Prede_0764 putative glycoprotease GCP K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Prede_0385 ATPase, YjeE family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Prede_2251 dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Prede_1376 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Prede_0033 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:pdt03012] D Prede_0069 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Prede_2146 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Prede_2091 ATPase component of ABC transporters with duplicated ATPase domain K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Prede_1146 translation elongation factor Ts K02357 tsf; elongation factor Ts D Prede_0206 translation elongation factor TU K02358 tuf; elongation factor Tu D Prede_0235 translation elongation factor EF-G K02355 fusA; elongation factor G D Prede_2254 small GTP-binding protein domain protein K02355 fusA; elongation factor G D Prede_0630 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Prede_0329 ribosome recycling factor K02838 frr; ribosome recycling factor D Prede_1207 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Prede_1597 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Prede_0259 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Prede_0141 translation elongation factor P K02356 efp; elongation factor P D Prede_0120 protein chain release factor B K02836 prfB; peptide chain release factor 2 D Prede_2141 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:pdt03110] D Prede_1539 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Prede_0616 ATPase with chaperone activity, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D Prede_1078 endopeptidase Clp ATP-binding regulatory subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Prede_2272 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG D Prede_0985 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Prede_2168 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Prede_1726 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Prede_0680 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 cbpA; curved DNA-binding protein D Prede_0853 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05801 djlA; DnaJ like chaperone protein D Prede_1725 molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE D Prede_1603 molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein D Prede_1596 ribosome-associated heat shock protein implicated in recycling of 50S subunit K04762 hslR; ribosome-associated heat shock protein Hsp15 D Prede_2167 Co-chaperonin GroES K04078 groES; chaperonin GroES D Prede_1782 periplasmic serine protease, Do/DeqQ family K04771 degP; serine protease Do [EC:3.4.21.107] D Prede_0891 ATP-dependent metalloprotease FtsH K08956 AFG3; AFG3 family protein [EC:3.4.24.-] D Prede_2647 F0F1-type ATP synthase, alpha subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Prede_1035 N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Prede_0866 N-acetyl-beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Prede_1964 hypothetical protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Prede_1005 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Prede_1422 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Prede_1424 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Prede_0862 FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Prede_1074 parvulin-like peptidyl-prolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Prede_1075 parvulin-like peptidyl-prolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Prede_0386 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:pdt04131] D Prede_1666 hypothetical protein K07192 FLOT; flotillin D Prede_2155 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Prede_2293 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Prede_2272 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:pdt03051] D Prede_2272 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:pdt03032] D Prede_1259 putative double-stranded RNA/RNA-DNA hybrid binding protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Prede_1740 bacterial nucleoid DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D Prede_1302 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_0611 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_2265 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_1508 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Prede_0778 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Prede_0913 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101] D Prede_2457 DNA primase, catalytic core K02316 dnaG; DNA primase [EC:2.7.7.101] D Prede_0422 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Prede_0384 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Prede_0602 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Prede_0856 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Prede_0310 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Prede_0603 DNA polymerase III, alpha subunit (gram-positive type) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_2350 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_0488 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Prede_0074 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Prede_0341 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Prede_2010 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Prede_1867 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Prede_0090 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Prede_1011 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Prede_1469 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Prede_0028 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Prede_0455 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:pdt03036] D Prede_1404 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Prede_1666 hypothetical protein K07192 FLOT; flotillin D Prede_1740 bacterial nucleoid DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D Prede_1302 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_0611 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_2265 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_0680 DnaJ-class molecular chaperone with C-terminal Zn finger domain K05516 cbpA; curved DNA-binding protein D Prede_1508 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Prede_1696 DNA-binding ferritin-like protein (oxidative damage protectant) K04047 dps; starvation-inducible DNA-binding protein D Prede_0096 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Prede_0595 putative ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D Prede_0104 cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Prede_0656 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Prede_0097 hypothetical protein K03589 ftsQ; cell division protein FtsQ D Prede_0100 bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW D Prede_2675 cell division protein K09811 ftsX; cell division transport system permease protein D Prede_0095 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Prede_2714 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Prede_2667 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Prede_0302 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Prede_0303 cell shape-determining protein K03570 mreC; rod shape-determining protein MreC D Prede_0306 bacterial cell division membrane protein K05837 rodA; rod shape determining protein RodA D Prede_0895 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein D Prede_2417 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein K03496 parA; chromosome partitioning protein D Prede_2526 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein D Prede_2101 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein K03496 parA; chromosome partitioning protein D Prede_0896 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Prede_1011 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Prede_1469 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Prede_1462 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Prede_0648 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Prede_0200 site-specific recombinase XerD K03733 xerC; integrase/recombinase XerC D Prede_1332 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D Prede_1379 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D Prede_1855 site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD D Prede_1684 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning D Prede_0993 protein involved in cell division K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Prede_2014 ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:pdt03400] D Prede_0084 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Prede_1191 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Prede_2273 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Prede_2304 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Prede_2382 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Prede_1733 NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Prede_0111 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Prede_2672 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Prede_2659 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Prede_0811 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Prede_1911 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Prede_1789 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Prede_2288 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Prede_1460 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Prede_1536 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Prede_1741 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Prede_0214 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Prede_0215 DNA-directed RNA polymerase, beta' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Prede_0264 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Prede_0497 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Prede_1430 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Prede_2632 mismatch repair ATPase (MutS family) K07456 mutS2; DNA mismatch repair protein MutS2 D Prede_1071 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Prede_0443 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Prede_0442 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Prede_0384 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Prede_0602 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Prede_0856 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Prede_0310 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Prede_0603 DNA polymerase III, alpha subunit (gram-positive type) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_2350 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Prede_0488 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Prede_0422 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Prede_0341 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Prede_2010 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Prede_0960 protein RecA K03553 recA; recombination protein RecA D Prede_0950 Holliday junction DNA helicase, RuvA subunit K03550 ruvA; holliday junction DNA helicase RuvA D Prede_0001 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Prede_0650 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Prede_0184 primosomal protein N'' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Prede_0402 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Prede_2333 recF protein K03629 recF; DNA replication and repair protein RecF D Prede_1136 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Prede_1081 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Prede_0093 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Prede_0640 recombination protein RecR K06187 recR; recombination protein RecR D Prede_0605 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Prede_1867 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Prede_0090 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Prede_0028 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Prede_1740 bacterial nucleoid DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D Prede_1302 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_0611 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_2265 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Prede_0812 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Prede_1077 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Prede_1635 nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V D Prede_1208 hypothetical protein K03565 recX; regulatory protein D Prede_2712 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Prede_0472 exopolyphosphatase-like enzyme K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:pdt03029] D Prede_0069 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Prede_2146 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Prede_1146 translation elongation factor Ts K02357 tsf; elongation factor Ts D Prede_0206 translation elongation factor TU K02358 tuf; elongation factor Tu D Prede_0235 translation elongation factor EF-G K02355 fusA; elongation factor G D Prede_2254 small GTP-binding protein domain protein K02355 fusA; elongation factor G D Prede_1088 GTP-binding protein Era K03595 era; GTPase D Prede_1324 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Prede_1366 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Prede_2658 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Prede_1006 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Prede_1258 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Prede_0331 DNA/RNA endonuclease G, NUC1 K01173 ENDOG; endonuclease G, mitochondrial D Prede_1659 DNA/RNA endonuclease G, NUC1 K01173 ENDOG; endonuclease G, mitochondrial D Prede_0422 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Prede_1286 outer membrane protein/protective antigen OMA87 K07277 SAM50; outer membrane protein insertion porin family D Prede_0985 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Prede_1725 molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE D Prede_2168 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Prede_2167 Co-chaperonin GroES K04078 groES; chaperonin GroES D Prede_1726 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Prede_1684 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning D Prede_0501 membrane protein insertase, YidC/Oxa1 family, N-terminal domain protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Prede_2272 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:pdt02000] D Prede_0361 ABC-type multidrug transport system, ATPase and permease component K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Prede_1848 ABC-type multidrug transport system, ATPase and permease component K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Prede_0362 ABC-type multidrug transport system, ATPase and permease component K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Prede_1849 ABC-type multidrug transport system, ATPase and permease component K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Prede_1394 ABC-type multidrug transport system, ATPase and permease component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Prede_1131 ABC-type multidrug transport system, ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Prede_2013 ATPase component of ABC transporters with duplicated ATPase domain K15738 uup; ABC transport system ATP-binding/permease protein D Prede_0651 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA K05776 modF; molybdate transport system ATP-binding protein D Prede_0403 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Prede_1864 ABC-type uncharacterized transport system, permease component K02069 STAR2; UDP-glucose/iron transport system permease protein D Prede_1865 ATPase component of Mn/Zn ABC-type transporter K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D Prede_2715 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Prede_1083 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Prede_1085 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Prede_0784 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein D Prede_0783 ABC-type Fe3+-siderophore transport system, permease component K25027 btuC; cobalamin transport system permease protein D Prede_1233 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D Prede_0300 putative permease K07091 lptF; lipopolysaccharide export system permease protein D Prede_0798 putative permease K11720 lptG; lipopolysaccharide export system permease protein D Prede_1082 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Prede_2239 ABC-type multidrug transport system, permease component K25180 ybhR; drug efflux transport system permease protein D Prede_2240 ABC-type multidrug transport system, permease component K25181 ybhS; drug efflux transport system permease protein D Prede_2241 ABC-type multidrug transport system, ATPase component K25182 ybhF; drug efflux transport system ATP-binding protein D Prede_2242 multidrug resistance efflux pump K25183 ybhG; membrane fusion protein YbhG D Prede_0535 ABC-type transport system, involved in lipoprotein release, permease component K09808 lolC_E; lipoprotein-releasing system permease protein D Prede_1292 ABC-type transport system, involved in lipoprotein release, permease component K09808 lolC_E; lipoprotein-releasing system permease protein D Prede_1062 ABC-type antimicrobial peptide transport system, ATPase component K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Prede_2675 cell division protein K09811 ftsX; cell division transport system permease protein D Prede_0595 putative ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D Prede_0456 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D Prede_0457 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D Prede_1971 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Prede_1858 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D Prede_1127 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D Prede_1128 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D Prede_0712 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D Prede_0713 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D Prede_1859 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Prede_1129 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Prede_0711 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Prede_0071 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D Prede_2655 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Prede_1058 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump D Prede_0730 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump D Prede_2083 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D Prede_2376 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D Prede_1256 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump D Prede_0835 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D Prede_0445 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump D Prede_0510 fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D Prede_0274 fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D Prede_2700 L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D Prede_1729 fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D Prede_2708 nitrate/nitrite transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D Prede_1039 sugar phosphate permease K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D Prede_0737 arabinose efflux permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Prede_0869 Major Facilitator Superfamily transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Prede_1055 arabinose efflux permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Prede_2706 phosphotransferase system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component D Prede_2313 Mg-chelatase subunit ChlD K07114 yfbK; Ca-activated chloride channel homolog D Prede_2312 Mg-chelatase subunit ChlD K07114 yfbK; Ca-activated chloride channel homolog D Prede_2154 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D Prede_0927 small-conductance mechanosensitive channel K16053 ybdG; miniconductance mechanosensitive channel D Prede_1104 flagellar motor protein K02557 motB; chemotaxis protein MotB D Prede_0297 biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB D Prede_1555 biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB D Prede_0316 Mg2+/Co2+ transporter K03284 corA; magnesium transporter D Prede_0732 crcB protein K06199 crcB; fluoride exporter D Prede_1575 copper chaperone K08364 merP; periplasmic mercuric ion binding protein D Prede_1965 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D Prede_0423 gliding motility-associated protein GldE K03699 tlyC; magnesium and cobalt exporter, CNNM family D Prede_0692 outer membrane protein/peptidoglycan-associated (lipo)protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Prede_1686 outer membrane protein/peptidoglycan-associated (lipo)protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Prede_0185 long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein D Prede_1822 outer membrane receptor for Fe3+-dicitrate K16091 fecA; Fe(3+) dicitrate transport protein D Prede_1509 outer membrane cobalamin receptor protein K16092 btuB; vitamin B12 transporter D Prede_0786 outer membrane cobalamin receptor protein K16092 btuB; vitamin B12 transporter D Prede_1119 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_1937 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_0010 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_0577 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_1579 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_1631 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_2079 outer membrane receptor protein K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_2186 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_0967 TonB-linked outer membrane protein, SusC/RagA family K21573 susC; TonB-dependent starch-binding outer membrane protein SusC D Prede_0372 outer membrane cobalamin receptor protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Prede_1595 outer membrane receptor for ferrienterochelin and colicins K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Prede_0439 outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Prede_0882 outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Prede_2709 outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Prede_1861 outer membrane protein K12340 tolC; outer membrane protein D Prede_0716 outer membrane protein K12340 tolC; outer membrane protein D Prede_0319 outer membrane protein K12340 tolC; outer membrane protein D Prede_2669 efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Prede_2326 periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein D Prede_1286 outer membrane protein/protective antigen OMA87 K07277 SAM50; outer membrane protein insertion porin family D Prede_2289 outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD D Prede_0925 putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein D Prede_1116 Na+/melibiose symporter-like transporter K16211 malY; maltose/moltooligosaccharide transporter D Prede_0982 putative divalent heavy-metal cations transporter K07238 TC.ZIP; zinc transporter, ZIP family D Prede_1889 putative membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D Prede_1931 putative glucose uptake permease K05340 glcU; glucose uptake protein D Prede_0970 L-rhamnose-proton symport protein (RhaT) K02856 rhaT; L-rhamnose-H+ transport protein D Prede_1604 K+dependent Na+ exchanger related-protein K07301 yrbG; cation:H+ antiporter D Prede_1272 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D Prede_1776 NhaP-type Na+(K+)/H+ antiporter K11105 cvrA; potassium/hydrogen antiporter D Prede_1614 Kef-type K+ transport system, membrane component K26735 KEA4_5_6; K+:H+ antiporter D Prede_1061 Kef-type K+ transport system, membrane component K26730 napA; Na+:H+ antiporter D Prede_0958 Trk-type K+ transport system, membrane component K03498 trkH; trk/ktr system potassium uptake protein D Prede_0957 K+ transport system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein D Prede_2031 uracil-xanthine permease K02824 uraA; uracil permease D Prede_1668 xanthine permease K16345 xanP; xanthine permease XanP D Prede_0585 permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Prede_2048 chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family D Prede_1106 chromate transport protein ChrA K07240 chrA; chromate transporter D Prede_1107 chromate transport protein ChrA K07240 chrA; chromate transporter D Prede_1275 Na+/phosphate symporter K03324 yjbB; phosphate:Na+ symporter D Prede_1276 Na/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter D Prede_1605 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D Prede_0100 bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW D Prede_0294 TonB family protein K03832 tonB; periplasmic protein TonB D Prede_1551 TonB family protein K03832 tonB; periplasmic protein TonB D Prede_0440 vacuolar-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D Prede_1529 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3] D Prede_1527 acetyl/propionyl-CoA carboxylase, alpha subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Prede_2667 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Prede_2043 capsular exopolysaccharide biosynthesis protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D Prede_2690 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1309 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1018 hypothetical protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1022 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1766 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1770 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1820 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1492 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_2053 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_2057 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_2224 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_2295 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1265 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0077 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0968 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1578 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0049 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0009 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_2038 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1156 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_2694 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1936 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1000 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1632 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1248 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0344 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0966 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1488 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0576 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0321 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0164 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_1120 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_2187 RagB/SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family D Prede_0438 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D Prede_0622 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B D Prede_1115 putative membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:pdt02044] D Prede_1861 outer membrane protein K12340 tolC; outer membrane protein D Prede_0716 outer membrane protein K12340 tolC; outer membrane protein D Prede_0319 outer membrane protein K12340 tolC; outer membrane protein D Prede_2337 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Prede_0921 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC D Prede_1970 preprotein translocase subunit SecA (ATPase, RNA helicase) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Prede_1305 protein-export membrane protein, SecD/SecF family K12257 secDF; SecD/SecF fusion protein D Prede_0208 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Prede_0879 protein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Prede_0257 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Prede_0821 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Prede_0613 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Prede_1600 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Prede_0501 membrane protein insertase, YidC/Oxa1 family, N-terminal domain protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Prede_2638 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D Prede_2637 twin arginine targeting protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:pdt02042] D Prede_1965 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D Prede_0423 gliding motility-associated protein GldE K03699 tlyC; magnesium and cobalt exporter, CNNM family D Prede_2027 putative membrane protein, hemolysin III K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:pdt02022] D Prede_2255 signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Prede_0043 signal transduction histidine kinase K19694 chiS; two-component system, sensor histidine kinase ChiS C 02035 Bacterial motility proteins [BR:pdt02035] D Prede_1104 flagellar motor protein K02557 motB; chemotaxis protein MotB C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:pdt04812] D Prede_0302 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Prede_0095 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Prede_0096 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Prede_0895 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein D Prede_2417 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein K03496 parA; chromosome partitioning protein D Prede_2526 ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein D Prede_2101 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein K03496 parA; chromosome partitioning protein D Prede_0896 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:pdt04147] D Prede_2272 molecular chaperone of HSP90 family K04079 HSP90A; molecular chaperone HtpG D Prede_0704 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Prede_2155 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Prede_0400 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Prede_2293 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Prede_1666 hypothetical protein K07192 FLOT; flotillin D Prede_2168 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Prede_0985 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Prede_1513 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Prede_1703 dipeptidyl aminopeptidase/acylaminoacyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Prede_1788 dipeptidyl aminopeptidase/acylaminoacyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Prede_1076 inosine-5''-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Prede_0206 translation elongation factor TU K02358 tuf; elongation factor Tu D Prede_1216 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Prede_0533 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0534 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0119 AMP-forming long-chain acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0725 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Prede_0280 adenylate kinase-like kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Prede_1461 PRPP-binding protein, adenine/guanine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Prede_1212 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Prede_0159 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Prede_1633 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D Prede_1004 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D Prede_1730 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Prede_0676 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Prede_1162 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1543 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Prede_1584 Alpha-N-acetylglucosaminidase (NAGLU) K01205 NAGLU; alpha-N-acetylglucosaminidase [EC:3.2.1.50] D Prede_0569 phosphoglycerate dehydrogenase-like oxidoreductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Prede_0285 AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Prede_1945 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Prede_0916 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit C 02048 Prokaryotic defense system [BR:pdt02048] D Prede_1523 CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Prede_1517 CRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Prede_1521 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Prede_1519 CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG K19117 csd1; CRISPR-associated protein Csd1 D Prede_1520 CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG K19118 csd2; CRISPR-associated protein Csd2 D Prede_1518 CRISPR-associated protein Cas5, subtype I-C/DVULG K19119 cas5d; CRISPR-associated protein Cas5d D Prede_2009 DpnII restriction endonuclease K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4] D Prede_0341 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Prede_2010 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Prede_1252 addiction module toxin, RelE/StbE family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D Prede_0618 addiction module toxin, RelE/StbE family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D Prede_2069 addiction module toxin, RelE/StbE family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D Prede_1545 toxin-antitoxin system, toxin component, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-] D Prede_1448 toxin-antitoxin system, toxin component, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-] D Prede_1449 prevent-host-death family protein K19159 yefM; antitoxin YefM D Prede_0158 putative stress-responsive transcriptional regulator K03973 pspC; phage shock protein C D Prede_0922 plasmid maintenance system killer protein K07334 higB-1; toxin HigB-1 D Prede_0923 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1 D Prede_1429 uncharacterized protein, YhcH/YjgK/YiaL family K19334 tabA; biofilm protein TabA D Prede_0095 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Prede_0302 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Prede_1011 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Prede_1469 type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Prede_0189 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:pdt04090] D Prede_1703 dipeptidyl aminopeptidase/acylaminoacyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Prede_1788 dipeptidyl aminopeptidase/acylaminoacyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] C 01504 Antimicrobial resistance genes [BR:pdt01504] D Prede_0358 aminoglycoside N3'-acetyltransferase K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81] D Prede_2667 RND family efflux transporter, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Prede_2669 efflux transporter, outer membrane factor lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Prede_1861 outer membrane protein K12340 tolC; outer membrane protein D Prede_0716 outer membrane protein K12340 tolC; outer membrane protein D Prede_0319 outer membrane protein K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pdt00537] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:pdt03100] D Prede_0466 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_0753 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_0173 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_1096 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_2234 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Prede_2266 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_0486 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_2267 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_0396 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_1442 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Prede_0057 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Prede_0635 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Prede_0636 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Prede_1797 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Prede_0889 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Prede_1322 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Prede_1680 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Prede_1679 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Prede_0092 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Prede_0417 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_0420 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_1240 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_0525 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_0204 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Prede_0880 tRNA-His K14226 tRNA-His; tRNA His D Prede_0172 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_1097 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_0465 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_2233 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_0754 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Prede_1016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_1229 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_1239 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_0418 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_0419 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Prede_1927 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Prede_1928 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Prede_2390 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Prede_2351 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_0020 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_2097 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_2500 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_2589 tRNA-Met K14230 tRNA-Met; tRNA Met D Prede_0127 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Prede_1991 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Prede_0376 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Prede_2348 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Prede_0126 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Prede_0566 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Prede_1554 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Prede_1678 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Prede_2631 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Prede_0524 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Prede_0202 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Prede_2071 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Prede_0205 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Prede_0207 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Prede_0203 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Prede_1988 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Prede_1067 tRNA-Val K14237 tRNA-Val; tRNA Val D Prede_1068 tRNA-Val K14237 tRNA-Val; tRNA Val D Prede_1754 tRNA-Val K14237 tRNA-Val; tRNA Val D Prede_0171 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0464 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_1098 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_2232 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0755 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Prede_0174 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_0467 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_1095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_0752 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_2235 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Prede_0175 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_2236 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_0751 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_1094 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_0468 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Prede_2072 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Prede_1301 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D Prede_1413 putative oxidoreductase, aryl-alcohol dehydrogenase like protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D Prede_0843 indolepyruvate ferredoxin oxidreductase, alpha/beta subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D Prede_0844 2-oxoacid:ferredoxin oxidoreductase, gamma subunit K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D Prede_0961 saccharopine dehydrogenase-like oxidoreductase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55] D Prede_1697 alkyl hydroperoxide reductase, F subunit K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D Prede_0836 methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D Prede_1663 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Prede_1698 peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D Prede_1296 desulfoferrodoxin ferrous iron-binding domain protein K05919 dfx; superoxide reductase [EC:1.15.1.2] D Prede_2105 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D Prede_2032 pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Prede_0149 ornithine carbamoyltransferase K13043 argF; N-succinyl-L-ornithine transcarbamylase [EC:2.1.3.11] D Prede_2181 acetyltransferase (isoleucine patch superfamily) K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D Prede_1616 acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D Prede_1056 putative glycosylase K18785 mp2; beta-1,4-mannooligosaccharide/beta-1,4-mannosyl-N-acetylglucosamine phosphorylase [EC:2.4.1.319 2.4.1.320] D Prede_1445 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Prede_2077 membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Prede_0132 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D Prede_1619 protein of unknown function (DUF303) K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53] D Prede_1764 protein of unknown function (DUF303) K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53] D Prede_1840 carboxylesterase type B K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D Prede_1841 carboxylesterase type B K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D Prede_1481 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Prede_0188 putative domain HDIG-containing protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D Prede_1553 Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Prede_1762 beta-1,4-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D Prede_2545 phage-related lysozyme (muraminidase) K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D Prede_1124 arabinogalactan endo-1,4-beta-galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89] D Prede_1294 beta-xylosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D Prede_1105 beta-xylosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D Prede_1110 glycosidase K21575 susA; neopullulanase [EC:3.2.1.135] D Prede_1765 O-glycosyl hydrolase K15924 xynC; glucuronoarabinoxylan endo-1,4-beta-xylanase [EC:3.2.1.136] D Prede_1757 alpha-glucuronidase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139] D Prede_1153 putative unsaturated glucuronyl hydrolase K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172] D Prede_2188 family 31 glycosyl hydrolase, alpha-glucosidase K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177] D Prede_2503 negative regulator of beta-lactamase expression K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Prede_2586 negative regulator of beta-lactamase expression K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Prede_1710 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Prede_0513 putative xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Prede_1990 endoribonuclease L-PSP, putative K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Prede_2309 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Prede_0416 carboxynorspermidine decarboxylase K27684 capadc; carboxyaminopropylagmatine decarboxylase [EC:4.1.1.127] D Prede_0278 yjeF-like protein, hydroxyethylthiazole kinase-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Prede_1246 polysaccharide lyase family 8 K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21] D Prede_1478 FG-GAP repeat protein K18197 yesW; rhamnogalacturonan endolyase [EC:4.2.2.23] D Prede_1040 cyclically-permuted mutarotase family protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24] D Prede_0437 L-rhamnose 1-epimerase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D Prede_0687 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Prede_0688 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Prede_0689 putative NADH:ubiquinone oxidoreductase, subunit RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Prede_0408 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D Prede_0409 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D Prede_0410 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D Prede_0411 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D Prede_0412 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D Prede_0413 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D Prede_0831 P-type ATPase, translocating K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Prede_0019 plasma-membrane calcium-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D Prede_2344 heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D Prede_0686 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Prede_0685 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Prede_0684 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Prede_0864 flavodoxin, long chain K03839 fldA; flavodoxin I D Prede_0915 electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Prede_0563 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Prede_0325 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription C 99974 Translation C 99975 Protein processing D Prede_1080 trigger factor K03545 tig; trigger factor D Prede_0761 SsrA-binding protein K03664 smpB; SsrA-binding protein D Prede_1236 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D Prede_0139 DNA repair protein radc K03630 radC; DNA repair protein RadC D Prede_2082 hypothetical protein K09760 rmuC; DNA recombination protein RmuC D Prede_2435 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D Prede_1228 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D Prede_1627 putative endonuclease related to Holliday junction resolvase K07460 yraN; putative endonuclease D Prede_1480 DNA protecting protein DprA K04096 smf; DNA processing protein D Prede_0544 AAA ATPase K07478 ycaJ; putative ATPase D Prede_1896 transposase K07486 K07486; transposase D Prede_0871 transposase K07486 K07486; transposase D Prede_1231 transposase K07486 K07486; transposase D Prede_1831 transposase K07486 K07486; transposase D Prede_2238 transposase K07486 K07486; transposase D Prede_2381 transposase K07486 K07486; transposase D Prede_1716 transposase K07486 K07486; transposase D Prede_1808 transposase K07497 K07497; putative transposase D Prede_2386 transposase K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Prede_1973 glycoside/pentoside/hexuronide transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D Prede_2173 glycoside/pentoside/hexuronide transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D Prede_1763 glycoside/pentoside/hexuronide transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D Prede_2668 hydrophobe/amphiphile efflux-1 (HAE1) family transporter K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Prede_1907 dipeptide/tripeptide permease K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Prede_1732 SSS sodium solute transporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Prede_0123 SNF family Na+-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Prede_0124 SNF family Na+-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Prede_1167 putative Na+-dependent transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Prede_1582 putative permease K07085 K07085; putative transport protein D Prede_0586 putative permease K07085 K07085; putative transport protein D Prede_1220 putative permease K07085 K07085; putative transport protein C 99978 Cell growth D Prede_0114 membrane-bound metallopeptidase K22719 envC; murein hydrolase activator C 99993 Cell motility C 99995 Signaling proteins D Prede_2682 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D Prede_0625 phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins C 99992 Structural proteins D Prede_1287 outer membrane protein K06142 hlpA; outer membrane protein D Prede_1288 outer membrane protein K06142 hlpA; outer membrane protein D Prede_1289 outer membrane protein K06142 hlpA; outer membrane protein D Prede_2268 outer membrane protein K06142 hlpA; outer membrane protein D Prede_1879 lysozyme M1 (1,4-beta-N-acetylmuramidase) K07273 acm; lysozyme D Prede_1877 lysozyme M1 (1,4-beta-N-acetylmuramidase) K07273 acm; lysozyme D Prede_2086 lysozyme M1 (1,4-beta-N-acetylmuramidase) K07273 acm; lysozyme D Prede_0458 multidrug resistance efflux pump K01993 ABC-2.TX; HlyD family secretion protein D Prede_0715 multidrug resistance efflux pump K02005 ABC.CD.TX; HlyD family secretion protein D Prede_1126 RND family efflux transporter, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Prede_1122 hypothetical protein K21571 susE_F; starch-binding outer membrane protein SusE/F D Prede_1121 hypothetical protein K21571 susE_F; starch-binding outer membrane protein SusE/F C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D Prede_0367 putative dehydrogenase K03810 mviM; virulence factor D Prede_1693 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein D Prede_2237 putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein D Prede_0314 putative HAD superfamily hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D Prede_0070 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D Prede_0072 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D Prede_1912 putative membrane protein K07058 K07058; membrane protein D Prede_1438 SufE protein probably involved in Fe-S center assembly K02426 sufE; cysteine desulfuration protein SufE D Prede_0463 hypothetical protein K03744 lemA; LemA protein D Prede_0029 putative membrane protein K21741 rclC; reactive chlorine resistance protein C C 99997 Function unknown D Prede_0136 anaerobic sulfatase-maturating enzyme K06871 K06871; uncharacterized protein D Prede_0462 beta-propeller domain-containing protein, methanol dehydrogenase K06872 K06872; uncharacterized protein D Prede_0168 FtsH-interacting integral membrane protein K06890 K06890; uncharacterized protein D Prede_2529 hypothetical protein K06926 K06926; uncharacterized protein D Prede_1610 hypothetical protein K06950 K06950; uncharacterized protein D Prede_0771 putative HD superfamily hydrolase K06950 K06950; uncharacterized protein D Prede_0480 putative acetyltransferase K06975 K06975; uncharacterized protein D Prede_1198 putative esterase K07000 K07000; uncharacterized protein D Prede_1851 putative RND superfamily exporter K07003 K07003; uncharacterized protein D Prede_0481 putative flavin-nucleotide-binding protein K07005 K07005; uncharacterized protein D Prede_2153 putative flavin-nucleotide-binding protein K07005 K07005; uncharacterized protein D Prede_0946 putative toxin-antitoxin system toxin component, PIN family K07063 K07063; uncharacterized protein D Prede_1375 putative nucleotidyltransferase K07075 K07075; uncharacterized protein D Prede_2020 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein D Prede_0494 putative phosphohydrolase K07098 K07098; uncharacterized protein D Prede_0905 putative phosphohydrolase K07098 K07098; uncharacterized protein D Prede_0952 putative phosphohydrolase K07098 K07098; uncharacterized protein D Prede_2120 short-chain dehydrogenase of unknown substrate specificity K07124 K07124; uncharacterized protein D Prede_0186 putative ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein D Prede_2450 putative ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein D Prede_1431 putative ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein D Prede_0806 hypothetical protein K07133 K07133; uncharacterized protein D Prede_2300 FAD-dependent dehydrogenase K07137 K07137; uncharacterized protein D Prede_0852 Zn-ribbon protein, possibly nucleic acid-binding protein K07164 K07164; uncharacterized protein D Prede_1325 hypothetical protein K08998 K08998; uncharacterized protein D Prede_0665 uncharacterized protein with conserved CXXC pairs K08999 K08999; uncharacterized protein D Prede_0094 hypothetical protein K09117 K09117; uncharacterized protein D Prede_1999 hypothetical protein K09155 K09155; uncharacterized protein D Prede_2231 hypothetical protein K09704 K09704; uncharacterized protein D Prede_1323 hypothetical protein K09797 K09797; uncharacterized protein D Prede_1063 hypothetical protein K00243 K00243; uncharacterized protein D Prede_1637 hypothetical protein K09861 K09861; uncharacterized protein D Prede_2696 hypothetical protein K09955 K09955; uncharacterized protein D Prede_2697 hypothetical protein K09955 K09955; uncharacterized protein D Prede_1029 hypothetical protein K09955 K09955; uncharacterized protein D Prede_1032 hypothetical protein K09955 K09955; uncharacterized protein D Prede_0695 hypothetical protein K09955 K09955; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 20, 2024