+F Repair protein KO #

  DNA Repair and Recombination Proteins - Prevotella dentalis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E Prede_0084 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Prede_1191 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Prede_2273 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Prede_2304 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Prede_0111 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E Prede_0084 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Prede_1191 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Prede_2672 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Prede_2273 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Prede_2659 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E Prede_0811 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Prede_1911 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Prede_1789 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Prede_2288 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Prede_1460 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Prede_1536 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Prede_1741 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Prede_0214 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Prede_0215 DNA-directed RNA polymerase, beta' subunit, predominant form K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Prede_0264 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Prede_0497 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Prede_1430 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Prede_2632 mismatch repair ATPase (MutS family) K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Prede_1071 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Prede_0443 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Prede_0442 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Prede_0384 DNA-directed DNA polymerase III PolC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Prede_0602 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Prede_0856 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Prede_0310 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Prede_0603 DNA polymerase III, alpha subunit (gram-positive type) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Prede_2350 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Prede_0488 DNA polymerase III, subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Prede_1536 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Prede_1741 DNA/RNA helicase, superfamily I K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Prede_0422 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E Prede_0341 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Prede_2010 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Prede_0960 protein RecA K03553 recA; recombination protein RecA E Prede_0950 Holliday junction DNA helicase, RuvA subunit K03550 ruvA; holliday junction DNA helicase RuvA E Prede_0001 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Prede_0650 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Prede_0184 primosomal protein N'' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E Prede_0960 protein RecA K03553 recA; recombination protein RecA E Prede_0402 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Prede_2333 recF protein K03629 recF; DNA replication and repair protein RecF E Prede_1136 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Prede_1081 putative transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Prede_0811 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Prede_0093 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Prede_0640 recombination protein RecR K06187 recR; recombination protein RecR E Prede_0605 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Prede_0950 Holliday junction DNA helicase, RuvA subunit K03550 ruvA; holliday junction DNA helicase RuvA E Prede_0001 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Prede_0650 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Prede_1867 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Prede_0090 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Prede_0028 DNA topoisomerase I, bacterial K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Prede_1740 bacterial nucleoid DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F Prede_1302 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Prede_0611 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Prede_2265 bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Prede_0811 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Prede_0093 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Prede_0640 recombination protein RecR K06187 recR; recombination protein RecR F Prede_2303 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Prede_0812 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Prede_1077 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Prede_1911 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Prede_1789 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Prede_2288 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Prede_1635 nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V C Other SOS response factors D Prede_0960 protein RecA K03553 recA; recombination protein RecA D Prede_0605 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Prede_0422 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Prede_1208 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D Prede_2304 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Prede_0111 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Prede_2712 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D Prede_0472 exopolyphosphatase-like enzyme K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024