+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pectobacterium parmentieri SCC3193

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D W5S_2377 O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D W5S_3103 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E W5S_1103 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E W5S_3409 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E W5S_2264 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D W5S_3910 Mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D W5S_4544 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D W5S_2377 O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D W5S_0921 Regulatory protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D W5S_3103 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D W5S_0922 Alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E W5S_1103 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E W5S_0683 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E W5S_0920 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E W5S_3409 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E W5S_4630 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E W5S_4539 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E W5S_3097 Endonuclease 8 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E W5S_2264 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E W5S_2211 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E W5S_1873 putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E W5S_0235 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E W5S_0770 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E W5S_3699 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E W5S_4673 DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E W5S_4699 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E W5S_3801 Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E W5S_2942 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E W5S_1458 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E W5S_4319 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E W5S_1665 Putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E W5S_4699 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E W5S_3699 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E W5S_4673 DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F W5S_0220 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F W5S_0221 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F W5S_4136 RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F W5S_4675 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F W5S_2766 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E W5S_3336 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E W5S_4067 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E W5S_3402 DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E W5S_1980 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E W5S_1177 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E W5S_3276 Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E W5S_3344 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E W5S_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E W5S_0454 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E W5S_3144 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E W5S_2781 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E W5S_1048 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E W5S_3232 DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E W5S_0732 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E W5S_2067 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E W5S_3699 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E W5S_4673 DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E W5S_4319 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E W5S_1665 Putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E W5S_3542 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E W5S_3802 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E W5S_1529 Hypothetical protein K03111 ssb; single-strand DNA-binding protein E W5S_4571 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E W5S_1834 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E W5S_4215 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E W5S_3391 Exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E W5S_3393 Exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E W5S_3390 Exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E W5S_1006 Protein recA K03553 recA; recombination protein RecA E W5S_2048 Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E W5S_2049 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E W5S_2047 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E W5S_0186 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E W5S_3728 Primosomal replication protein n K02686 priB; primosomal replication protein N E W5S_3235 Primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E W5S_1980 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E W5S_3300 Periplasmic binding transport protein K03546 sbcC; DNA repair protein SbcC/Rad50 E W5S_3299 Nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E W5S_1006 Protein recA K03553 recA; recombination protein RecA E W5S_0564 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E W5S_0003 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E W5S_4678 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E W5S_0770 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E W5S_1116 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E W5S_3230 Recombination protein RecR K06187 recR; recombination protein RecR E W5S_0855 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E W5S_3302 Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC E W5S_2048 Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E W5S_2049 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E W5S_2047 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E W5S_3797 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E W5S_0415 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E W5S_1855 Helicase like protein K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E W5S_3300 Periplasmic binding transport protein K03546 sbcC; DNA repair protein SbcC/Rad50 E W5S_3299 Nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F W5S_3209 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F W5S_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F W5S_2261 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F W5S_0237 DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F W5S_3258 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F W5S_0770 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F W5S_1116 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F W5S_3230 Recombination protein RecR K06187 recR; recombination protein RecR F W5S_3699 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F W5S_4673 DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F W5S_0255 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F W5S_2127 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F W5S_1950 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F W5S_1980 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F W5S_4311 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F W5S_3801 Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F W5S_2942 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F W5S_2823 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F W5S_3041 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F W5S_1520 Histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F W5S_2226 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D W5S_3576 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D W5S_1006 Protein recA K03553 recA; recombination protein RecA D W5S_0631 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D W5S_0855 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D W5S_3969 DNA polymerase K02336 polB; DNA polymerase II [EC:2.7.7.7] D W5S_3542 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D W5S_3802 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D W5S_1529 Hypothetical protein K03111 ssb; single-strand DNA-binding protein D W5S_4571 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D W5S_2800 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D W5S_1007 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D W5S_4370 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D W5S_2835 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D W5S_2895 Putative ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D W5S_2169 DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D W5S_3910 Mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D W5S_4544 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D W5S_3211 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D W5S_1051 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D W5S_3212 Ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D W5S_1050 Ribonucleoside-diphosphate reductase 2 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024