+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Candidatus Phaeomarinibacter ectocarpi

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D BN1012_Phect3174 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C BN1012_Phect3173 GTP-binding protein Era K03595 era; GTPase C BN1012_Phect1229 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C BN1012_Phect302 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor C BN1012_Phect3087 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C BN1012_Phect1640 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C BN1012_Phect3132 Transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB C BN1012_Phect89 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D BN1012_Phect2667 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D BN1012_Phect1446 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BN1012_Phect2634 Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BN1012_Phect2173 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D BN1012_Phect2204 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D BN1012_Phect1549 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BN1012_Phect473 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D BN1012_Phect1605 rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D BN1012_Phect2318 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D BN1012_Phect91 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BN1012_Phect2632 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D BN1012_Phect1237 LSU m3Psi1915 methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D BN1012_Phect1361 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D BN1012_Phect2318 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D BN1012_Phect2319 23S rRNA (Uracil-5-)-methyltransferase RumA (EC 2.1.1.-) K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D BN1012_Phect608 Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BN1012_Phect2174 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BN1012_Phect3267 Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D BN1012_Phect663 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C BN1012_Phect1626 Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C BN1012_Phect2222 Ribosomal-protein-S5p-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C BN1012_Phect3022 Ribosomal protein S6 glutaminyl transferase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C BN1012_Phect1307 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C BN1012_Phect452 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C BN1012_Phect3174 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C BN1012_Phect2702 Cytoplasmic axial filament protein CafA and Ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12] C BN1012_Phect2054 Cytoplasmic axial filament protein CafA and Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C BN1012_Phect3210 Putative Holliday junction resolvase YggF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases B GTPases C BN1012_Phect3173 GTP-binding protein Era K03595 era; GTPase C BN1012_Phect1300 Probable GTPase related to EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C BN1012_Phect2643 GTP-binding protein EngA K03977 engA; GTPase C BN1012_Phect1229 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-] C BN1012_Phect2866 GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C BN1012_Phect2310 TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C BN1012_Phect3181 GTP pyrophosphokinase, (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C BN1012_Phect1643 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C BN1012_Phect1639 FIG000325: clustered with transcription termination protein NusA K09748 rimP; ribosome maturation factor RimP C BN1012_Phect1236 Ribosomal silencing factor RsfA (former Iojap) K09710 ybeB; ribosome-associated protein C BN1012_Phect1631 Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor C BN1012_Phect1736 Ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025