+E Ribosome biogenesis KO
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Ribosome Biogenesis - Pseudomonas synxantha LBUM223
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D VO64_4187 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D VO64_3730 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D VO64_3588 3'-to-5' oligoribonuclease (orn) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C VO64_4188 GTP-binding protein Era K03595 era; GTPase
C VO64_2010 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C VO64_2988 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
C VO64_2075 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
C VO64_5698 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
C VO64_2098 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C VO64_2353 Transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
C VO64_2431 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D VO64_4579 Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D VO64_2465 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D VO64_3062 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D VO64_3998 Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D VO64_2669 Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D VO64_2612 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D VO64_3040 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D VO64_4018 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D VO64_4016 rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D VO64_4406 SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D VO64_4416 Ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D VO64_3606 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D VO64_2104 Heat shock protein FtsJ/RrmJ Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D VO64_4175 Ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D VO64_2181 23S rRNA guanine-N-2-methyltransferase rlmG K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D VO64_2290 LSU m3Psi1915 methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D VO64_0111 Methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D VO64_2089 Methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D VO64_2680 LSU m5C1962 methyltransferase RlmI K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D VO64_3536 Protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D VO64_4943 23S rRNA (guanine-N-2-) -methyltransferase rlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D VO64_4684 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D VO64_1942 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D VO64_5030 tRNA (Uracil54-C5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D VO64_4861 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VO64_5162 Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VO64_1720 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D VO64_1559 Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D VO64_3861 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D VO64_2260 Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D VO64_4370 tRNA pseudouridine synthase A K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C VO64_3801 Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C VO64_3313 Ribosomal protein S6 glutaminyl transferase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C VO64_1887 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C VO64_4372 Ribosomal protein S12p Asp88 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C VO64_0545 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C VO64_5210 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C VO64_3691 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C VO64_5191 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C VO64_0904 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C VO64_4187 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C VO64_1561 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C VO64_3949 Cytoplasmic axial filament protein CafA and Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C VO64_2642 Putative Holliday junction resolvase YggF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C VO64_2576 ATP-dependent 23S rRNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C VO64_4839 DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C VO64_5015 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C VO64_4188 GTP-binding protein Era K03595 era; GTPase
C VO64_3587 Ribosome small subunit-stimulated GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C VO64_1934 GTP-binding protein EngA K03977 engA; GTPase
C VO64_2010 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C VO64_3597 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C VO64_3067 TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C VO64_2884 GTP pyrophosphokinase, (p)ppGpp synthetase II K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C VO64_2096 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C VO64_2099 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C VO64_2291 Iojap protein K09710 ybeB; ribosome-associated protein
C VO64_2271 Metal-dependent hydrolase YbeY, involved in K07042 ybeY; probable rRNA maturation factor
C VO64_2105 RNA binding protein K07574 yhbY; RNA-binding protein
C VO64_3953 Putative alpha helix protein K09889 yjgA; ribosome-associated protein
C VO64_3963 Ribosome hibernation protein YhbH K05808 hpf; ribosome hibernation promoting factor
C VO64_3808 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
C VO64_1555 protein clustered with ribosomal protein L32p K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024