+F Repair protein KO
#
DNA Repair and Recombination Proteins - Pseudomonas ogarae
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PSF113_0968 Methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D PSF113_4919 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E PSF113_1400 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PSF113_5163 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E PSF113_0341 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PSF113_4559 nth; Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E PSF113_2941 DinG family ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D PSF113_2646 mutT; MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PSF113_4633 mutT2; MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PSF113_4679 Nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PSF113_5761 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PSF113_0968 Methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D PSF113_2304 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PSF113_2433 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PSF113_4919 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D PSF113_2305 alkB; AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E PSF113_1400 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PSF113_5163 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E PSF113_0341 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PSF113_0012 tag; Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E PSF113_5571 mutM; MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E PSF113_4559 nth; Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E PSF113_3938 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E PSF113_5765 crc; Crc K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E PSF113_1986 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E PSF113_1070 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E PSF113_4026 nad-dependent dna ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E PSF113_5491 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E PSF113_0036 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E PSF113_5267 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A
E PSF113_3000 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E PSF113_1891 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B
E PSF113_3285 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E PSF113_5855 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PSF113_0036 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
E PSF113_4026 nad-dependent dna ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E PSF113_5491 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F PSF113_5302 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F PSF113_5301 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F PSF113_5271 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F PSF113_5771 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F PSF113_3975 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E PSF113_1167 mutS; MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E PSF113_0561 mutL; MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E PSF113_4645 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E PSF113_1033 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E PSF113_5226 xseB; XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E PSF113_1148 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E PSF113_0002 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E PSF113_4723 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E PSF113_5148 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E PSF113_4141 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E PSF113_3628 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PSF113_5409 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PSF113_5117 DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PSF113_4022 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E PSF113_4026 nad-dependent dna ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E PSF113_5491 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E PSF113_5855 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PSF113_5265 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
E PSF113_3340 Single-stranded DNA-binding protein in PFGI-1-like cluster K03111 ssb; single-strand DNA-binding protein
E PSF113_4284 prophage adenine modification methytransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E PSF113_0712 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E PSF113_0711 Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E PSF113_0713 Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E PSF113_1192 recA; RecA K03553 recA; recombination protein RecA
E PSF113_4616 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PSF113_4615 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PSF113_4617 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E PSF113_0419 priA; PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E PSF113_4645 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E PSF113_3654 sbcC; SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E PSF113_3655 sbcD; SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E PSF113_1192 recA; RecA K03553 recA; recombination protein RecA
E PSF113_5073 radA; RadA K04485 radA; DNA repair protein RadA/Sms
E PSF113_0003 recF; RecF K03629 recF; DNA replication and repair protein RecF
E PSF113_5781 recG; RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E PSF113_1070 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E PSF113_4715 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E PSF113_4019 recR; RecR K06187 recR; recombination protein RecR
E PSF113_0851 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E PSF113_4373 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
E PSF113_4616 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PSF113_4615 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PSF113_4617 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E PSF113_3654 sbcC; SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E PSF113_3655 sbcD; SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E PSF113_4638 Hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E PSF113_2699 Ku domain protein K10979 ku; DNA end-binding protein Ku
E PSF113_2698 ligD; LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E PSF113_2933 ligD2; LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F PSF113_1636 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F PSF113_0004 gyrB; GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F PSF113_3985 topA; TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F PSF113_2298 DNA topoisomerase IB (poxvirus type) K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F PSF113_0128 DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
F PSF113_3914 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
F PSF113_3313b hupB; HupB K03530 hupB; DNA-binding protein HU-beta
F PSF113_4727 DNA-binding protein HU, form N K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F PSF113_1070 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F PSF113_4715 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F PSF113_4019 recR; RecR K06187 recR; recombination protein RecR
F PSF113_4026 nad-dependent dna ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F PSF113_5491 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F PSF113_0652 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F PSF113_2022 ihfA; IhfA K04764 ihfA; integration host factor subunit alpha
F PSF113_1643 ihfB; IhfB K05788 ihfB; integration host factor subunit beta
E Supressor
F PSF113_4645 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F PSF113_1514 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F PSF113_0292 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F PSF113_5267 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A
F PSF113_3000 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F PSF113_1891 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D PSF113_1212 dinB; DinB K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D PSF113_3292 umuC; UmuC K03502 umuC; DNA polymerase V
D PSF113_4281 umuC2; UmuC K03502 umuC; DNA polymerase V
D PSF113_3291 umuD; UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D PSF113_1192 recA; RecA K03553 recA; recombination protein RecA
D PSF113_3981 lexA2; LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PSF113_3230 lexA; LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PSF113_0851 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PSF113_3842 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D PSF113_3231 recA; RecA/RadA K14160 imuA; protein ImuA
D PSF113_3232 dna repair nucleotidyltransferase dna polymerase-like protein K14161 imuB; protein ImuB
D PSF113_3233 DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D PSF113_5265 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
D PSF113_3340 Single-stranded DNA-binding protein in PFGI-1-like cluster K03111 ssb; single-strand DNA-binding protein
D PSF113_1193 recX; RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D PSF113_5739 rep; Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D PSF113_2189 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D PSF113_1238 dinG; DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PSF113_5253 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D PSF113_2646 mutT; MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PSF113_4633 mutT2; MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PSF113_4679 Nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PSF113_5761 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PSF113_4450 nrdA; NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PSF113_4498 nrdB; NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024