+E Transcription factors KO #

  Transcription Factors - Pandoraea faecigallinarum

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D AB870_02855 methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D AB870_10400 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D AB870_20920 cupin K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D AB870_15640 hypothetical protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D AB870_17065 AraC family transcriptional regulator K21747 alkR; AraC family transcriptional regulator, alkane utilization regulator D AB870_25790 hypothetical protein K07506 K07506; AraC family transcriptional regulator D AB870_16020 hypothetical protein K07506 K07506; AraC family transcriptional regulator D AB870_19945 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D AB870_13675 XRE family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AB870_14510 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AB870_19050 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AB870_05175 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AB870_16410 pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D AB870_03960 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D AB870_07845 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D AB870_15820 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D AB870_17200 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D AB870_21155 transcriptional regulator K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D AB870_15000 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D AB870_12635 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D AB870_00975 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D AB870_04355 hypothetical protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D AB870_22895 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D AB870_14610 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D AB870_15425 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D AB870_18540 transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D AB870_11725 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D AB870_16645 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D AB870_16815 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes C DeoR family D AB870_18830 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D AB870_02370 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D AB870_14190 AraC family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D AB870_16550 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D AB870_14245 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D AB870_22960 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D AB870_19965 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AB870_20860 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AB870_07245 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AB870_03350 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AB870_25835 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AB870_18230 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AB870_06985 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D AB870_15165 2-aminoadipate aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AB870_16260 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AB870_22870 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AB870_03740 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AB870_12620 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator D AB870_14460 transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator C TetR/AcrR family D AB870_04980 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D AB870_12705 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D AB870_11670 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D AB870_17895 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AB870_04395 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AB870_07600 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AB870_04755 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D AB870_03230 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D AB870_19100 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AB870_14890 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AB870_14440 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AB870_11320 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AB870_11380 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AB870_04345 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AB870_04405 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AB870_17595 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D AB870_00630 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D AB870_25750 hypothetical protein K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR D AB870_04595 hypothetical protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR C MarR family D AB870_05490 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D AB870_11425 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D AB870_14975 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family C Fur family D AB870_12525 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D AB870_08175 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family D AB870_15075 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D AB870_15080 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D AB870_16960 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D AB870_16585 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D AB870_14920 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D AB870_17710 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D AB870_22015 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D AB870_09215 transcriptional regulator K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator D AB870_13715 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D AB870_04550 IclR family transcriptional regulator K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor D AB870_20545 IclR family transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D AB870_02205 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AB870_21030 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D AB870_19500 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D AB870_18805 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D AB870_18215 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D AB870_00180 transcriptional regulator K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator D AB870_04240 shikimate kinase K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator D AB870_07885 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D AB870_15565 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D AB870_13615 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D AB870_08105 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D AB870_11530 propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D AB870_02410 propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D AB870_25305 antitoxin K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D AB870_23870 antitoxin K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D AB870_16515 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AB870_05725 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AB870_09110 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AB870_11855 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein D AB870_05015 hypothetical protein K02019 modE; molybdate transport system regulatory protein D AB870_04125 hypothetical protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D AB870_10650 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D AB870_11595 transcriptional repressor rcnR K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D AB870_00785 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D AB870_11145 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AB870_24380 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AB870_25150 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AB870_06685 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D AB870_12330 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D AB870_16860 transcription elongation factor GreAB K06140 rnk; regulator of nucleoside diphosphate kinase D AB870_18010 GNAT family N-acetyltransferase K06140 rnk; regulator of nucleoside diphosphate kinase D AB870_18965 transcriptional regulator K07734 paiB; transcriptional regulator D AB870_07755 hypothetical protein K07735 algH; putative transcriptional regulator D AB870_12535 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D AB870_04195 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D AB870_08605 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0