+E Transcription factors KO
#
Transcription Factors - Pseudomonas protegens Pf-5
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D PFL_3013 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PFL_3792 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D PFL_3369 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D PFL_3497 pchR; regulatory protein PchR K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
D PFL_2326 transcriptional regulator, AraC family K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
D PFL_3214 transcriptional regulator, AraC family K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D PFL_5171 pobR; transcriptional regulator PobR K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PFL_4818 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PFL_3186 transcriptional regulator, AraC family K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D PFL_1558 transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator
D PFL_4576 transcription activator, effector-binding domain protein K13653 K13653; AraC family transcriptional regulator
D PFL_0999 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D PFL_2831 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D PFL_0379 methylated-DNA-[protein]-cysteine S-methyltransferase, ADA family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PFL_3409 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PFL_2250 ftrA; transcriptional activator FtrA K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D PFL_2423 transcriptional regulator, AraC family K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D PFL_5751 transcriptional regulator, AraC family K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D PFL_4516 argR; arginine pathway regulatory protein ArgR K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D PFL_5760 gbdR; transcriptional regulator GbdR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D PFL_0980 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_3812 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_1311 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_4813 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_5000 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_3594 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_5201 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_5173 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_6028 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_5019 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_0336 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_2510 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_0595 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_0614 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PFL_5397 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D PFL_4890 metR; transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PFL_3998 nhaR; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D PFL_6070 oxyR; oxidative stress regulatory protein OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PFL_4823 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PFL_1492 cynR; HTH-type transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D PFL_5683 pqqH; transcriptional regulator PqqH K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D PFL_4268 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D PFL_5811 mdcR; malonate utilization transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D PFL_2324 transcriptional regulator, LysR family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D PFL_0802 transcriptional regulator, LysR family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D PFL_4360 transcriptional regulator, LysR family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D PFL_4053 ampR; transcriptional activator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D PFL_3233 mexT; transcriptional regulator MexT K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PFL_1484 transcriptional regulator, LysR family K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PFL_5204 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PFL_2898 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PFL_3837 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D PFL_2986 fitG; transcriptional regulator FitG K19618 fitG; LysR family transcriptional regulator, activator of insecticidal toxin
D PFL_6127 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D PFL_0732 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D PFL_3463 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D PFL_5891 aminoethylphosphonate catabolism associated LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D PFL_3963 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D PFL_6159 transcriptional regulator, LysR family K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator
D PFL_3863 catR; transcriptional activator CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D PFL_2785 pltR; transcriptional regulator PltR K22711 pltR; LysR family transcriptional regulator, pyoluteorin biosynthesis regulator
D PFL_3054 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D PFL_0038 trpI; HTH-type transcriptional regulator TrpI K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
C DeoR family
D PFL_4869 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D PFL_0502 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D PFL_2104 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PFL_2721 transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D PFL_0858 fruR; DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D PFL_4581 gntR; transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D PFL_0254 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D PFL_4935 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D PFL_0399 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D PFL_1082 transcriptional regulator, GntR family/UbiC transcription regulator-associated domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D PFL_1808 transcriptional regulator, GntR family/UbiC transcription regulator-associated domain protein K03710 K03710; GntR family transcriptional regulator
D PFL_0818 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PFL_5348 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PFL_3673 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PFL_2433 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PFL_4373 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PFL_2270 glcC; glc operon transcriptional activator K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D PFL_2191 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PFL_6148 transcriptional regulator, GntR family/aminotransferase, classes I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PFL_0754 transcriptional regulator, GntR family/aminotransferase, classes I and II K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PFL_2582 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PFL_3473 vanR; transcriptional regulator VanR K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
C TetR/AcrR family
D PFL_5766 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PFL_2706 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PFL_1333 emhR; transcriptional regulator EmhR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D PFL_0730 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D PFL_2545 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D PFL_1703 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D PFL_2447 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D PFL_4531 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D PFL_2807 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PFL_2927 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PFL_4302 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PFL_4148 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PFL_1156 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D PFL_4193 pfiT_atuR; transcriptional regulator I2 K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D PFL_5951 phlH; 2,4-diacetylphloroglucinol biosynthesis regulator PhlH K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D PFL_2794 pltZ; transcriptional regulator PltZ K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D PFL_3737 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_6039 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_5421 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_6201 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_3057 putative leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_5411 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_3513 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_4037 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_2535 bkdR; transcriptional regulator BkdR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFL_5944 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D PFL_3627 autoinducer-binding transcriptional regulator, LuxR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D PFL_5298 psoR; LuxR family transcriptional regulatory protein PsoR K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D PFL_2143 transcriptional regulator, LuxR family K20330 toxJ; LuxR family transcriptional regulator, activator of tox operons
D PFL_5114 transcriptional regulator, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D PFL_0965 transcriptional regulator, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D PFL_0154 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PFL_1580 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PFL_4262 ohrR; organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D PFL_4244 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D PFL_0709 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PFL_2355 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PFL_0764 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PFL_4160 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D PFL_0952 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D PFL_5146 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D PFL_0824 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PFL_0078 np20; transcriptional regulator np20 K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D PFL_5393 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D PFL_1315 pcaR; Pca regulon regulatory protein PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D PFL_2281 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D PFL_1347 transcriptional regulator, IclR family K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
C CRP/FNR family
D PFL_5619 vfr; cyclic nucleotide-binding transcriptional regulator Vfr K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PFL_0197 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PFL_5262 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PFL_1506 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PFL_1910 anr; transcriptional regulator Anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D PFL_4966 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D PFL_2186 arsR; arsenic resistance transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D PFL_6160 transcriptional regulator, RpiR family/SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PFL_4611 hexR; transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PFL_0774 transcriptional regulator, RpiR family/SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PFL_5601 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PFL_0667 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PFL_1052 ygiT; transcriptional regulator YgiT K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D PFL_5188 DNA-binding protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D PFL_2816 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D PFL_1634 fleQ; sigma 54 dependent transcriptional regulator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PFL_4135 peaR; sigma-54 dependent transcriptional activator PeaR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PFL_2168 acoR; acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PFL_5468 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PFL_2926 sigma-54 dependent transcriptional regulator K11917 sfa3; sigma-54 dependent transcriptional regulator
D PFL_5041 sigma-54 dependent transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D PFL_3379 putative sugar diacid recognition domain protein K02647 cdaR; carbohydrate diacid regulator
D PFL_3618 molybdenum-pterin binding protein K02019 modE; molybdate transport system regulatory protein
D PFL_5695 molybdate transport transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D PFL_1042 YheO-like protein K21829 dauR; D-arginine utilization repressor
D PFL_3911 higA-2; antitoxin HigA-2 K07726 K07726; putative transcriptional regulator
D PFL_0218 conserved hypothetical protein K07727 K07727; putative transcriptional regulator
D PFL_4031 DNA-binding protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D PFL_0495 putA; proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D PFL_2507 transcriptional repressor, FrmR family K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D PFL_4326 bolA; BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PFL_6223 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PFL_5092 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D PFL_1612 phhR; sigma-54 dependent transcriptional regulator PhhR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PFL_4639 tyrR; transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PFL_1456 conserved hypothetical protein K03567 gcvR; glycine cleavage system transcriptional repressor
D PFL_3128 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D PFL_3459 acetyltransferase, GNAT family K06140 rnk; regulator of nucleoside diphosphate kinase
D PFL_6009 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D PFL_5832 pyrR; putative PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PFL_6149 putative negative regulatory protein K07734 paiB; transcriptional regulator
D PFL_5830 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D PFL_5270 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D PFL_6174 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D PFL_2596 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D PFL_5523 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D PFL_2302 rtcR; sigma-54 dependent transcriptional regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR
D PFL_5070 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0