+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Poecilia formosa (Amazon molly)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 103156261 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 103133411 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 103142949 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 103138583 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 103136592 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 isoform X1 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 103143576 fam103a1; RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 103152184 ncbp1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 103129483 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 103153800 nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 103139428 cpsf7; cleavage and polyadenylation specificity factor subunit 7 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 103146503 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X3 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 103147478 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 103129742 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 103146681 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 103133556 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 103146800 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 103147269 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 103153436 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 103137772 pre-mRNA 3'-end-processing factor FIP1-like isoform X3 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 103137119 fip1l1; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 103129955 wdr33; pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 103136834 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 103144960 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103152354 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103152404 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103140626 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103154964 ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 103130300 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 103152732 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 103150174 cstf2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 103136541 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 103130261 sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 103131225 small nuclear ribonucleoprotein-associated protein B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 103147618 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 103144093 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 103150225 snrpg; small nuclear ribonucleoprotein G isoform X1 K11099 SNRPG; small nuclear ribonucleoprotein G
E 103154968 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 103154061 U7 snRNA-associated Sm-like protein LSm11 isoform X1 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 103154065 U7 snRNA-associated Sm-like protein LSm11 isoform X1 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 103133556 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 103146800 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 103147269 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 103150174 cstf2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 103130261 sympk; symplekin K06100 SYMPK; symplekin
E 103132132 histone RNA hairpin-binding protein-like isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 103155406 oocyte-specific histone RNA stem-loop-binding protein 2-like K18710 SLBP; histone RNA hairpin-binding protein
E 103155408 oocyte-specific histone RNA stem-loop-binding protein 2-like K18710 SLBP; histone RNA hairpin-binding protein
E 103150844 casp8ap2; CASP8-associated protein 2 isoform X1 K25593 CASP8AP2; CASP8-associated protein 2
E 103132901 CASP8-associated protein 2-like K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 103133835 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 103150919 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 103137573 mettl3; N6-adenosine-methyltransferase 70 kDa subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 103137879 mettl14; N6-adenosine-methyltransferase subunit METTL14 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 103140490 mettl4; methyltransferase-like protein 4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 103155190 mettl16; methyltransferase-like protein 16 isoform X1 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 103134487 wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 103140857 kiaa1429; protein virilizer homolog isoform X2 K22910 VIRMA; protein virilizer
E 103151045 rbm15; putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 103153859 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 103147129 zc3h13; zinc finger CCCH domain-containing protein 13 isoform X2 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 103151782 cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 103154922 papolg; poly(A) polymerase gamma isoform X2 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 103142955 papd4; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 103143178 speckle targeted PIP5K1A-regulated poly(A) polymerase-like K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 103129328 BRCA1-associated RING domain protein 1-like isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 103143522 rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 103138088 fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 103136360 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 103138913 TAR DNA-binding protein 43-like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 103138914 TAR DNA-binding protein 43-like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 103137072 TAR DNA-binding protein 43-like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 103145380 dhx40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 103153575 kin; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 103134287 mettl8; methyltransferase-like protein 8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 103149260 mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 103146643 fam46a; protein FAM46A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 103143160 fam46b; protein FAM46B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 103144141 protein FAM46A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 103152144 fam46c; protein FAM46C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 103138632 zc3h14; zinc finger CCCH domain-containing protein 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 103129615 serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
D 103145628 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 103150792 rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 103139827 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 103133395 aly/REF export factor 2-like K12881 THOC4; THO complex subunit 4
E 103153320 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 103131949 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 103143211 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 103146871 casc3; protein CASC3 isoform X2 K14323 CASC3; protein CASC3
E 103130326 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 103154688 pnn; pinin K13114 PNN; pinin
E 103138403 LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus-like K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 103145983 apoptotic chromatin condensation inducer in the nucleus-like K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 103153450 serine/arginine repetitive matrix protein 1-like isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
E 103153504 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 103135737 thoc1; THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 103133995 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 103136861 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 103133395 aly/REF export factor 2-like K12881 THOC4; THO complex subunit 4
E 103153320 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 103142924 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 103153069 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 103151494 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 103130085 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 103146331 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 103135632 cetn2; centrin-2 K10840 CETN2; centrin-2
E 103156157 centrin-3-like K16466 CETN3; centrin-3
E 103156158 centrin-3-like K16466 CETN3; centrin-3
E 103138197 mcm3ap; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 103137288 nucleoprotein TPR-like K09291 TPR; nucleoprotein TPR
E 103146991 tpr; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 103145796 rae1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 103150140 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 103140257 nup37; nucleoporin Nup37 isoform X1 K14302 NUP37; nuclear pore complex protein Nup37
E 103141700 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 103154162 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 103140187 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 103142712 nup54; nucleoporin p54 isoform X3 K14308 NUP54; nuclear pore complex protein Nup54
E 103134296 nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 103138221 nup88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 103129272 nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 103156602 nup98; nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 103154035 nup107; nuclear pore complex protein Nup107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 103153640 nup133; nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 103151459 nup188; nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188
E 103135122 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 103149454 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 103152535 nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 103151391 nup35; nucleoporin NUP53 isoform X1 K14313 NUP35; nuclear pore complex protein Nup53
E 103138872 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 103145092 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 103142767 nup214; nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 103129127 nuclear envelope pore membrane protein POM 121-like K14316 POM121; nuclear pore complex protein Nup121
E 103135270 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 103145252 nucleoporin-like protein 2 K14321 NUPL2; nucleoporin-like protein 2
E 103146353 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 103136971 seh1l; nucleoporin SEH1 isoform X2 K14299 SEH1; nucleoporin SEH1
E 103141491 ranbp2; E3 SUMO-protein ligase RanBP2 isoform X2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 103155172 sentrin-specific protease 2-like K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 103144047 aaas; aladin isoform X2 K14320 AAAS; aladin
E 103140062 aladin-like K14320 AAAS; aladin
E 103156157 centrin-3-like K16466 CETN3; centrin-3
E 103156158 centrin-3-like K16466 CETN3; centrin-3
E 103134915 gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 103136877 nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 103139937 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 103147490 ran; GTP-binding nuclear protein Ran isoform X2 K07936 RAN; GTP-binding nuclear protein Ran
E 103146187 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X2 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 103130758 acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 103131735 acidic leucine-rich nuclear phosphoprotein 32 family member B-like isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 103129330 acidic leucine-rich nuclear phosphoprotein 32 family member B-like isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 103146556 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 103156913 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 103138464 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 103146375 elavl2; ELAV-like protein 2 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 103143748 elavl3; ELAV-like protein 3 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 103144509 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 103154164 transitional endoplasmic reticulum ATPase-like isoform X2 K13525 VCP; transitional endoplasmic reticulum ATPase
E 103142927 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 103138714 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 103145474 tnpo2; transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 103150544 transportin-2 K18727 TNPO2; transportin-2
E 103150752 exportin-1-like K14290 XPO1; exportin-1
E 103154927 exportin-1 isoform X1 K14290 XPO1; exportin-1
E 103152313 xpo7; exportin-7 isoform X2 K18460 XPO7; exportin-7
E 103153423 rangap1; ran GTPase-activating protein 1 isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 103143341 ran GTPase-activating protein 1-like K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 103132121 eukaryotic translation initiation factor 4E-1A-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 103147715 eukaryotic translation initiation factor 4E-like isoform X2 K03259 EIF4E; translation initiation factor 4E
E 103148937 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 103137354 eukaryotic translation initiation factor 4E-1A isoform X2 K03259 EIF4E; translation initiation factor 4E
E 103139964 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 103148870 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 103150627 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 103145222 eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X6 K03260 EIF4G; translation initiation factor 4G
E 103139474 eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 103143067 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 103150636 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 103134647 eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X3 K03260 EIF4G; translation initiation factor 4G
E 103143052 eukaryotic translation initiation factor 4 gamma 1-like isoform X7 K03260 EIF4G; translation initiation factor 4G
E 103139520 eif4b; eukaryotic translation initiation factor 4B isoform X2 K03258 EIF4B; translation initiation factor 4B
E 103150875 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 103151847 eukaryotic translation initiation factor 4E-binding protein 1-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 103145745 eukaryotic translation initiation factor 4E-binding protein 3-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 103133494 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 103139939 eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 103137684 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 103146759 angel2; protein angel homolog 2 isoform X2 K18729 ANGEL; protein angel
E 103136154 angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 103130635 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 103140600 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 103149288 fmr1; LOW QUALITY PROTEIN: fragile X mental retardation protein 1 K15516 FMR; fragile X mental retardation protein
E 103149331 cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 103155890 cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 103152875 gem-associated protein 5 isoform X6 K13133 GEMIN5; gem associated protein 5
E 103147250 gem-associated protein 5-like isoform X3 K13133 GEMIN5; gem associated protein 5
E 103154774 tacc3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 103144506 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103138646 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103148265 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103135967 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103137144 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103151390 ddx3x; ATP-dependent RNA helicase DDX3X isoform X9 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 103151942 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 103130361 PERQ amino acid-rich with GYF domain-containing protein 2-like isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103146596 gigyf1; PERQ amino acid-rich with GYF domain-containing protein 1 isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103143041 PERQ amino acid-rich with GYF domain-containing protein 2-like isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103145056 embryonic polyadenylate-binding protein B-like isoform X2 K13126 PABPC; polyadenylate-binding protein
E 103151587 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 103153373 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 103136982 pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 103145889 paip1; polyadenylate-binding protein-interacting protein 1 isoform X2 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 103132424 polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 103153601 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 103154562 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 103149388 deaf1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 103150190 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 103151028 denr; density-regulated protein isoform X2 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 103152901 APOBEC1 complementation factor-like isoform X1 K24978 A1CF; APOBEC1 complementation factor
E 103147087 APOBEC1 complementation factor-like isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 103139122 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 103134323 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 103141095 hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 103143845 dazap1; DAZ-associated protein 1 isoform X3 K14411 MSI; RNA-binding protein Musashi
E 103139561 RNA-binding protein Musashi homolog 1-like isoform X3 K14411 MSI; RNA-binding protein Musashi
E 103133943 RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 103141372 msi1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 103138671 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 103152355 pelo; protein pelota homolog K06965 PELO; protein pelota
E 103139340 embryonic polyadenylate-binding protein 2-B-like K14396 PABPN1; polyadenylate-binding protein 2
E 103139402 embryonic polyadenylate-binding protein 2-B K14396 PABPN1; polyadenylate-binding protein 2
E 103135324 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 103150989 ATP-dependent RNA helicase DDX19B-like isoform X2 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 103153884 ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 103156793 ATP-dependent RNA helicase DDX19B-like K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 103143719 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 103148212 sarnp; SAP domain-containing ribonucleoprotein isoform X1 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 103143158 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 103138048 larp6; la-related protein 6 K18733 LARP6; la-related protein 6
E 103146096 la-related protein 6-like K18733 LARP6; la-related protein 6
E 103141284 pura; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 103149274 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 103151752 purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 103154420 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 103143640 polymerase delta-interacting protein 3-like K22414 POLDIP3; polymerase delta-interacting protein 3
E 103143644 polymerase delta-interacting protein 3-like K22414 POLDIP3; polymerase delta-interacting protein 3
E 103136653 leng8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 103152357 protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 103129922 etf1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 103149257 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 103129167 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 103143823 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 103131441 setx; probable helicase senataxin isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 103154033 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 103133037 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 103134755 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 103150199 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 103131405 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 103135603 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 103155758 ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 103136231 ppp2r1b; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 103137798 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103144499 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103133552 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103146365 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103147458 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103154402 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 103146536 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 103154584 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 103134762 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 103131339 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103153274 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103133863 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103153614 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103147755 ppp2r5e; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 103155530 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 103149252 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 103150789 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 103139618 smg6; telomerase-binding protein EST1A isoform X2 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 103156144 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 103131631 protein SMG8-like K18734 SMG8; protein SMG8
E 103131794 protein SMG8-like K18734 SMG8; protein SMG8
E 103143127 smg9; protein SMG9 isoform X1 K18735 SMG9; protein SMG9
E 103130361 PERQ amino acid-rich with GYF domain-containing protein 2-like isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103146596 gigyf1; PERQ amino acid-rich with GYF domain-containing protein 1 isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103143041 PERQ amino acid-rich with GYF domain-containing protein 2-like isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 103142009 secisbp2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 103146153 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 103138220 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 103145451 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 103136460 GTP-binding protein 1-like isoform X2 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 103156852 pum3; pumilio homolog 3 isoform X2 K14844 PUF6; pumilio homology domain family member 6
E 103130561 unconventional myosin-Vb-like isoform X1 K10357 MYO5; myosin V
E 103135984 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 103155684 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 103155685 unconventional myosin-Va-like isoform X1 K10357 MYO5; myosin V
E 103149828 unconventional myosin-Va-like K10357 MYO5; myosin V
E 103138138 protein bicaudal D homolog 2-like isoform X2 K18739 BICD; protein bicaudal D
E 103138871 protein bicaudal D homolog 1 isoform X2 K18739 BICD; protein bicaudal D
E 103139040 protein bicaudal D homolog 2-like K18739 BICD; protein bicaudal D
E 103145086 protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 103136142 exd1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 103153440 actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 103136367 actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 103152610 actin, cytoplasmic 1-like
E 103143358 mbp; myelin basic protein K17269 MBP; myelin basic protein
E 103143427 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 103143496 myelin basic protein-like K17269 MBP; myelin basic protein
E 103135696 vim; vimentin K07606 VIM; vimentin
E 103136137 desmin-like K07606 VIM; vimentin
E 103129270 metallothionein K14739 MT1_2; metallothionein 1/2
E 103156129 transcriptional regulator Myc-B-like K04377 MYC; Myc proto-oncogene protein
E 103149787 transcriptional regulator Myc-like K04377 MYC; Myc proto-oncogene protein
E 103149788 transcriptional regulator Myc-like K04377 MYC; Myc proto-oncogene protein
E 103156957 transcriptional regulator Myc-like K04377 MYC; Myc proto-oncogene protein
E 103152375 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6
E 103148408 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 103150193 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 103139696 nanos homolog 1 K18741 NANOS1; protein nanos 1
E 103150069 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 103137305 nanos homolog 1-like K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 103148577 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 103149853 far upstream element-binding protein 3-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 103150540 khsrp; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 103129629 far upstream element-binding protein 3-like K13210 FUBP; far upstream element-binding protein
E 103148491 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 103149781 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 103143459 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 103143460 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 103137384 elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 103147507 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 103130962 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 103137523 arf-GAP domain and FG repeat-containing protein 2-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 103152922 agfg1; arf-GAP domain and FG repeat-containing protein 1 isoform X6 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 103149556 arf-GAP domain and FG repeat-containing protein 1-like K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 103137443 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 103139784 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 103145299 insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 103146521 ptbp1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 103144506 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103138646 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103148265 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103135967 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103137144 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 103130635 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 103140600 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 103149288 fmr1; LOW QUALITY PROTEIN: fragile X mental retardation protein 1 K15516 FMR; fragile X mental retardation protein
E 103149331 cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 103155890 cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 103144045 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 103135903 pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 103130014 poly(rC)-binding protein 3-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 103138153 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 103139210 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 103141827 poly(rC)-binding protein 4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 103153888 poly(rC)-binding protein 4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 103139434 caprin-1-like isoform X2 K18743 CAPRIN1; caprin-1
E 103150253 caprin1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 103155461 caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 103138992 ybx1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 103138350 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 103145293 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103139281 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103139283 protein argonaute-1 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103154986 protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103143488 protein argonaute-3-like isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 103132121 eukaryotic translation initiation factor 4E-1A-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 103147715 eukaryotic translation initiation factor 4E-like isoform X2 K03259 EIF4E; translation initiation factor 4E
E 103148937 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 103137354 eukaryotic translation initiation factor 4E-1A isoform X2 K03259 EIF4E; translation initiation factor 4E
E 103143823 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 103131441 setx; probable helicase senataxin isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 103151390 ddx3x; ATP-dependent RNA helicase DDX3X isoform X9 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 103151942 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 103138207 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 103143484 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 103150819 mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 103151246 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 103135399 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 103129941 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 103138055 lsm14a; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 103130838 protein LSM14 homolog A-like isoform X2 K18749 LSM14; protein LSM14
E 103145800 protein LSM14 homolog B-like isoform X1 K18749 LSM14; protein LSM14
E 103147790 lsm14b; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 103150277 protein LSM14 homolog A-like isoform X2 K18749 LSM14; protein LSM14
E 103144045 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 103135903 pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 103138992 ybx1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 103138059 wtip; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 103151192 LIM domain-containing protein 1-like K16682 AJUBA; LIM domain-containing protein
E 103151194 LIM domain-containing protein 1-like K16682 AJUBA; LIM domain-containing protein
E 103145984 LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 103145761 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 103134575 putative helicase mov-10-B.1 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 103149605 mov10; putative helicase MOV-10 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 103141516 proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 103135882 tnpo1; transportin-1 isoform X1 K18752 TNPO1; transportin-1
E 103149252 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 103150789 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 103139618 smg6; telomerase-binding protein EST1A isoform X2 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 103156144 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 103138240 zinc finger protein 36, C3H1 type-like 1 K18753 ZFP36L; butyrate response factor
E 103145569 zinc finger protein 36, C3H1 type-like 1 K18753 ZFP36L; butyrate response factor
E 103148335 zfp36l1; zinc finger protein 36, C3H1 type-like 1 K18753 ZFP36L; butyrate response factor
E 103154914 zfp36l2; zinc finger protein 36, C3H1 type-like 2 isoform X1 K18753 ZFP36L; butyrate response factor
E 103155467 zinc finger protein 36, C3H1 type-like 2 isoform X1 K18753 ZFP36L; butyrate response factor
E 103155468 zinc finger protein 36, C3H1 type-like 2 isoform X1 K18753 ZFP36L; butyrate response factor
E 103134341 lin28b; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 103141561 lin28a; protein lin-28 homolog A isoform X1 K18754 LIN28; protein lin-28
E 103133471 htt; huntingtin K04533 HD; huntingtin
E 103130412 ipo8; importin-8 isoform X3 K18755 IPO8; importin-8
E 103133598 bicc1; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 103135653 protein bicaudal C homolog 1-like isoform X1 K18756 BICC1; protein bicaudal C
E 103134323 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 103141095 hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 103130823 cAMP-dependent protein kinase catalytic subunit alpha-like isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 103130850 cAMP-dependent protein kinase catalytic subunit alpha-like K04345 PKA; protein kinase A [EC:2.7.11.11]
E 103151985 cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 103154167 prkaca; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 103135793 cAMP-dependent protein kinase catalytic subunit beta-like isoform X3 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 103129111 la-related protein 1B-like isoform X1 K18757 LARP1; la-related protein 1
E 103129820 larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 103152349 ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 103141770 atxn2; ataxin-2 isoform X2 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 103153228 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 103156030 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 103146497 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 103146580 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 103151356 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 103143240 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 103143825 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 103146936 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 103144838 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 103138523 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 103154281 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 103137642 klc4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 103138312 klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 103145925 klc2; kinesin light chain 2 isoform X1 K10407 KLC; kinesin light chain
E 103153828 klc1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 103130561 unconventional myosin-Vb-like isoform X1 K10357 MYO5; myosin V
E 103135984 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 103155684 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 103155685 unconventional myosin-Va-like isoform X1 K10357 MYO5; myosin V
E 103149828 unconventional myosin-Va-like K10357 MYO5; myosin V
E 103143817 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 103143873 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 103143874 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 103129902 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 103139097 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 103140711 tubulin alpha-1C chain-like isoform X1 K07374 TUBA; tubulin alpha
E 103140754 tubulin alpha-4 chain K07374 TUBA; tubulin alpha
E 103140755 tubulin alpha-4 chain-like K07374 TUBA; tubulin alpha
E 103140757 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 103140758 tubulin alpha chain K07374 TUBA; tubulin alpha
E 103153931 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 103154125 tuba4a; tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 103148207 tubulin alpha-1B chain isoform X2 K07374 TUBA; tubulin alpha
E 103148209 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 103142586 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 103149403 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 103156799 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 103144506 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103138646 cpeb4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103148265 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103135967 cpeb1; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103137144 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 103152875 gem-associated protein 5 isoform X6 K13133 GEMIN5; gem associated protein 5
E 103147250 gem-associated protein 5-like isoform X3 K13133 GEMIN5; gem associated protein 5
E 103154774 tacc3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 103137695 trinucleotide repeat-containing gene 6C protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 103141734 trinucleotide repeat-containing gene 6C protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 103147423 tnrc6a; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 103129174 trinucleotide repeat-containing gene 6B protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 103143617 trinucleotide repeat-containing gene 6B protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 103138894 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 103144404 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 103140179 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 103146427 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 103136644 cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 103134414 cnot4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 103134923 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 103135533 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 103152877 CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 103139883 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 103138057 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 103129207 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 103139124 pan2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 103139731 pan3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 103144242 protein Tob1-like K14443 TOB; protein Tob/BTG
E 103145458 tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 103146241 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 103152890 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 103153420 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 103142104 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 103143130 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 103137684 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 103156427 patl1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 103150248 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 103138849 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 103150532 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 103154033 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 103133037 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 103134755 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 103150199 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 103137690 probable E3 ubiquitin-protein ligase TRIML1 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 103132750 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 103156138 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 103143284 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 103147505 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 103139807 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 103137129 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 103137133 zygote arrest protein 1-like K18762 ZAR1; zygote arrest protein 1
E 103144229 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 103139080 YTH domain-containing family protein 1-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 103139723 ythdf3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
E 103141837 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 103146722 nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 103148249 tial1; nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR
E 103135829 nucleolysin TIA-1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 103145056 embryonic polyadenylate-binding protein B-like isoform X2 K13126 PABPC; polyadenylate-binding protein
E 103151587 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 103153373 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 103136982 pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 103137443 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 103139784 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 103130635 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 103140600 fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 103149288 fmr1; LOW QUALITY PROTEIN: fragile X mental retardation protein 1 K15516 FMR; fragile X mental retardation protein
E 103146556 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 103156913 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 103140093 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 103144809 g3bp2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 103152970 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 103131887 eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 103139964 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 103148870 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 103131949 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 103139520 eif4b; eukaryotic translation initiation factor 4B isoform X2 K03258 EIF4B; translation initiation factor 4B
E 103150627 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 103145222 eif4g1; eukaryotic translation initiation factor 4 gamma 1 isoform X6 K03260 EIF4G; translation initiation factor 4G
E 103139474 eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 103143067 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 103150636 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 103134647 eif4g3; eukaryotic translation initiation factor 4 gamma 3 isoform X3 K03260 EIF4G; translation initiation factor 4G
E 103143052 eukaryotic translation initiation factor 4 gamma 1-like isoform X7 K03260 EIF4G; translation initiation factor 4G
E 103144223 ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 103130211 rps6ka3; ribosomal protein S6 kinase alpha-3 isoform X3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 103139915 ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 103136529 ribosomal protein S6 kinase alpha-2-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 103135546 rack1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 103154502 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 103141905 TNF receptor-associated factor 2-like isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 103149802 traf2; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 103136877 nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 103130750 hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 103139399 tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 103146957 uncharacterized protein LOC103146957 isoform X1 K18763 LARP4; la-related protein 4
E 103141184 larp4; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 103147644 la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 103129851 larp4b; la-related protein 4B isoform X2 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 103156030 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 103146497 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 103153228 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 103138207 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 103143484 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 103150248 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 103138849 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 103156427 patl1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 103146580 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 103151356 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 103143240 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 103143825 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 103146936 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 103144838 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 103138523 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 103154281 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 103138350 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 103156411 xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 103151327 U8 snoRNA-decapping enzyme-like isoform X1 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 103149293 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 103148436 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 103150556 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 103149545 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 103155972 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 103135794 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 103138249 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 103148666 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 103144442 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 103140081 exosome complex component RRP43-like K12586 RRP43; exosome complex component RRP43
E 103140161 exosc8; exosome complex component RRP43 isoform X1 K12586 RRP43; exosome complex component RRP43
E 103132873 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 103133588 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 103151145 DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 103138927 exosc10; exosome component 10 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 103137375 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 103130840 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 103138066 papd5; non-canonical poly(A) RNA polymerase PAPD5 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 103150776 non-canonical poly(A) RNA polymerase PAPD7-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 103146019 papd7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 103137927 zinc finger CCHC domain-containing protein 7-like isoform X2 K12597 AIR1_2; protein AIR1/2
E 103147498 zinc finger CCHC domain-containing protein 7-like isoform X1 K12597 AIR1_2; protein AIR1/2
E 103142779 superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 103154562 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 103145402 ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 103134528 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 103134923 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 103135533 CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 103138894 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 103144404 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 103140179 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 103146427 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 103136644 cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 103134414 cnot4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 103152877 CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 103139883 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 103138132 cnot9; cell differentiation protein RCD1 homolog isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 103132260 cnot10; CCR4-NOT transcription complex subunit 10 isoform X2 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 103139124 pan2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 103139731 pan3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 103136437 parn; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 103148059 dhx36; ATP-dependent RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 103144242 protein Tob1-like K14443 TOB; protein Tob/BTG
E 103145458 tob1; protein Tob1 K14443 TOB; protein Tob/BTG
E 103146241 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 103152890 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 103153420 tob2; protein Tob2 K14443 TOB; protein Tob/BTG
E 103142104 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 103143130 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 103132691 nocturnin-like isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 103154723 noct; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 103129372 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 103136435 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 103149293 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 103154458 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 103134530 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 103148436 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 103132058 helz2; helicase with zinc finger domain 2 isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 103154537 nrde2; protein NRDE2 homolog isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 103139628 samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 103142646 samd4a; protein Smaug homolog 1 K27396 SMG; protein Smaug
E 103131693 focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 103147134 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 103133953 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 103141554 zc3h12a; bifunctional endoribonuclease and deubiquitinase ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 103146925 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 103130812 rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 103137853 alpha-enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 103151087 enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 103146450 gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 103136757 eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 103129607 beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 103137430 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 103137958 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X7 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 103138027 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 103141185 ATP-dependent 6-phosphofructokinase, muscle type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 103147648 ATP-dependent 6-phosphofructokinase, muscle type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 103155779 pfkl; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 103143367 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 103131840 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 103156731 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 103149545 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 103150556 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 103135794 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 103144442 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024