+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Pseudozyma flocculosa

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs D PFL1_06918 hypothetical protein K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-] D PFL1_06687 hypothetical protein K14564 NOP56; nucleolar protein 56 D PFL1_05827 hypothetical protein K14565 NOP58; nucleolar protein 58 D PFL1_04637 hypothetical protein K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13 C Box H/ACA snoRNPs D PFL1_03491 hypothetical protein K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D PFL1_06846 hypothetical protein K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1 D PFL1_05608 hypothetical protein K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2 D PFL1_05594 hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D PFL1_05526 hypothetical protein K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1 D PFL1_05981 hypothetical protein K14764 SHQ1; protein SHQ1 B 90S particles C U3 small nucleolar RNA-associated proteins D PFL1_01681 hypothetical protein K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 D PFL1_03719 hypothetical protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D PFL1_01265 hypothetical protein K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10 D PFL1_02486 hypothetical protein K14765 NGDN; U3 small nucleolar ribonucleoprotein protein LCP5 D PFL1_02011 hypothetical protein K14545 RRP7; ribosomal RNA-processing protein 7 D PFL1_03837 hypothetical protein K14558 PWP2; periodic tryptophan protein 2 D PFL1_04083 hypothetical protein K14766 NOP14; nucleolar protein 14 D PFL1_02370 hypothetical protein K14767 UTP3; U3 small nucleolar RNA-associated protein 3 D PFL1_00619 hypothetical protein K14548 UTP4; U3 small nucleolar RNA-associated protein 4 D PFL1_03540 hypothetical protein K14546 UTP5; U3 small nucleolar RNA-associated protein 5 D PFL1_06477 hypothetical protein K14557 UTP6; U3 small nucleolar RNA-associated protein 6 D PFL1_00510 hypothetical protein K14768 UTP7; U3 small nucleolar RNA-associated protein 7 D PFL1_06607 hypothetical protein K14550 UTP10; U3 small nucleolar RNA-associated protein 10 D PFL1_03360 hypothetical protein K14769 UTP11; U3 small nucleolar RNA-associated protein 11 D PFL1_02407 hypothetical protein K14556 DIP2; U3 small nucleolar RNA-associated protein 12 D PFL1_03198 hypothetical protein K14555 UTP13; U3 small nucleolar RNA-associated protein 13 D PFL1_04722 hypothetical protein K14567 UTP14; U3 small nucleolar RNA-associated protein 14 D PFL1_06025 hypothetical protein K14549 UTP15; U3 small nucleolar RNA-associated protein 15 D PFL1_03260 hypothetical protein K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17) D PFL1_02315 hypothetical protein K14553 UTP18; U3 small nucleolar RNA-associated protein 18 D PFL1_01650 hypothetical protein K14771 NOC4; U3 small nucleolar RNA-associated protein 19 D PFL1_05666 hypothetical protein K14772 UTP20; U3 small nucleolar RNA-associated protein 20 D PFL1_03944 hypothetical protein K14554 UTP21; U3 small nucleolar RNA-associated protein 21 D PFL1_06923 hypothetical protein K14544 UTP22; U3 small nucleolar RNA-associated protein 22 D PFL1_04091 hypothetical protein K14773 UTP23; U3 small nucleolar RNA-associated protein 23 D PFL1_06113 hypothetical protein K14566 UTP24; U3 small nucleolar RNA-associated protein 24 D PFL1_03427 hypothetical protein K14774 UTP25; U3 small nucleolar RNA-associated protein 25 D PFL1_03734 hypothetical protein K14775 UTP30; ribosome biogenesis protein UTP30 C Helicases D PFL1_01335 hypothetical protein K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7] D PFL1_03945 hypothetical protein K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7] D PFL1_03113 hypothetical protein K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7] D PFL1_04180 hypothetical protein K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7] D PFL1_04304 hypothetical protein K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7] D PFL1_02305 hypothetical protein K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6] D PFL1_04594 hypothetical protein K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6] D PFL1_06283 hypothetical protein K14781 DHR2; ATP-dependent RNA helicase DHR2 [EC:5.6.2.6] D PFL1_02004 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] C GTPase D PFL1_04560 hypothetical protein K14569 BMS1; ribosome biogenesis protein BMS1 C RNase D PFL1_04014 hypothetical protein K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-] D PFL1_01017 hypothetical protein K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-] C Kinase D PFL1_06416 hypothetical protein K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] D PFL1_01919 hypothetical protein K03115 CSNK2B; casein kinase II subunit beta D PFL1_02335 hypothetical protein K03115 CSNK2B; casein kinase II subunit beta C Other 90S particles D PFL1_03780 hypothetical protein K14782 AATF; protein AATF/BFR2 D PFL1_02590 hypothetical protein K14784 CMS1; protein CMS1 D PFL1_06761 hypothetical protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D PFL1_04437 hypothetical protein K14785 ESF2; ESF2/ABP1 family protein D PFL1_05667 hypothetical protein K14786 KRI1; protein KRI1 D PFL1_06527 hypothetical protein K06961 KRR1; ribosomal RNA assembly protein D PFL1_01558 hypothetical protein K14787 MRD1; multiple RNA-binding domain-containing protein 1 D PFL1_02958 hypothetical protein K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-] D PFL1_06763 hypothetical protein K11294 NCL; nucleolin D PFL1_04820 hypothetical protein K14788 NOL10; ribosome biogenesis protein ENP2 D PFL1_03348 hypothetical protein K14789 NOP6; nucleolar protein 6 D PFL1_01318 hypothetical protein K14790 NOP9; nucleolar protein 9 D PFL1_05700 hypothetical protein K11135 PINX1; Pin2-interacting protein X1 D PFL1_00658 hypothetical protein K14791 PWP1; periodic tryptophan protein 1 D PFL1_06480 hypothetical protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein D PFL1_03468 hypothetical protein K14792 RRP5; rRNA biogenesis protein RRP5 D PFL1_02726 hypothetical protein K14793 RRP9; ribosomal RNA-processing protein 9 D PFL1_05983 hypothetical protein K14794 RRP12; ribosomal RNA-processing protein 12 D PFL1_00511 hypothetical protein K14795 RRP36; ribosomal RNA-processing protein 36 D PFL1_02421 hypothetical protein K14796 TMA23; nucleolar protein TMA23 D PFL1_05890 hypothetical protein K11806 DCAF13; DDB1- and CUL4-associated factor 13 B Pre-40S particles C Kinases D PFL1_03356 hypothetical protein K14758 HRR25; casein kinase I homolog HRR25 [EC:2.7.11.1] D PFL1_04619 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PFL1_04441 hypothetical protein K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] C Export and cytoplasmic maturation factors D PFL1_01758 hypothetical protein K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] D PFL1_05927 hypothetical protein K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309] D PFL1_05472 hypothetical protein K14797 ENP1; essential nuclear protein 1 D PFL1_03399 hypothetical protein K14798 LTV1; protein LTV1 D PFL1_04212 hypothetical protein K11883 NOB1; RNA-binding protein NOB1 D PFL1_02290 hypothetical protein K11884 PNO1; RNA-binding protein PNO1 D PFL1_04028 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran D PFL1_03924 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran D PFL1_02174 hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3] D PFL1_06325 hypothetical protein K14799 TSR1; pre-rRNA-processing protein TSR1 D PFL1_00685 hypothetical protein K14800 TSR2; pre-rRNA-processing protein TSR2 D PFL1_03311 hypothetical protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D PFL1_01937 hypothetical protein K14801 TSR4; pre-rRNA-processing protein TSR4 D PFL1_01894 hypothetical protein K14290 XPO1; exportin-1 D PFL1_01582 hypothetical protein K14293 KPNB1; importin subunit beta-1 D PFL1_05767 hypothetical protein K18752 TNPO1; transportin-1 D PFL1_01415 hypothetical protein K20221 IPO4; importin-4 D PFL1_03737 hypothetical protein K20223 IPO7; importin-7 D PFL1_03457 hypothetical protein K20224 IPO9; importin-9 C Other pre-40S particles D PFL1_05708 hypothetical protein K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1] D PFL1_02911 hypothetical protein K03245 EIF3J; translation initiation factor 3 subunit J D PFL1_04650 hypothetical protein K14803 PTC2_3; protein phosphatase PTC2/3 [EC:3.1.3.16] D PFL1_06558 hypothetical protein K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 B Pre-60S particles C Helicases D PFL1_06831 hypothetical protein K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7] D PFL1_03945 hypothetical protein K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7] D PFL1_00617 hypothetical protein K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7] D PFL1_05611 hypothetical protein K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7] D PFL1_06626 hypothetical protein K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7] D PFL1_05080 hypothetical protein K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7] D PFL1_03029 hypothetical protein K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7] D PFL1_05605 hypothetical protein K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7] D PFL1_00711 hypothetical protein K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7] D PFL1_04955 hypothetical protein K14811 DBP3; ATP-dependent RNA helicase DBP3 [EC:5.6.2.7] D PFL1_01094 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] C GTPases D PFL1_04151 hypothetical protein K14538 NUG1; nuclear GTP-binding protein D PFL1_03145 hypothetical protein K14538 NUG1; nuclear GTP-binding protein D PFL1_01035 hypothetical protein K14537 NUG2; nuclear GTP-binding protein D PFL1_04269 hypothetical protein K06943 NOG1; nucleolar GTP-binding protein D PFL1_03426 hypothetical protein K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-] D PFL1_04178 hypothetical protein K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-] C RNases D PFL1_02456 hypothetical protein K14812 NGL2; RNA exonuclease NGL2 [EC:3.1.-.-] D PFL1_05777 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-] D PFL1_01193 hypothetical protein K14570 REX1; RNA exonuclease [EC:3.1.-.-] D PFL1_00831 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] D PFL1_06668 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D RNase MRP E PFL1_05468 hypothetical protein K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5] E PFL1_06908 hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] E PFL1_05494 hypothetical protein K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] E PFL1_05385 hypothetical protein K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5] C Kinases D PFL1_03356 hypothetical protein K14758 HRR25; casein kinase I homolog HRR25 [EC:2.7.11.1] C Export and cytoplasmic maturation factors D PFL1_04205 hypothetical protein K06185 ABCF2; ATP-binding cassette, subfamily F, member 2 D PFL1_04863 hypothetical protein K03264 EIF6; translation initiation factor 6 D PFL1_04090 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D PFL1_06905 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D PFL1_03666 hypothetical protein K14815 MRT4; mRNA turnover protein 4 D PFL1_00942 hypothetical protein K07562 NMD3; 60S ribosomal export protein NMD3 D PFL1_03582 hypothetical protein K14284 NXF; nuclear RNA export factor D PFL1_05153 hypothetical protein K14285 NXT1_2; NTF2-related export protein 1/2 D PFL1_04028 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran D PFL1_03924 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran D PFL1_01726 hypothetical protein K14816 REI1; pre-60S factor REI1 D PFL1_05310 hypothetical protein K14574 SDO1; ribosome maturation protein SDO1 D PFL1_02484 hypothetical protein K14575 AFG2; AAA family ATPase D PFL1_01510 hypothetical protein K14818 SQT1; ribosome assembly protein SQT1 D PFL1_01894 hypothetical protein K14290 XPO1; exportin-1 D PFL1_01582 hypothetical protein K14293 KPNB1; importin subunit beta-1 D PFL1_05767 hypothetical protein K18752 TNPO1; transportin-1 D PFL1_01415 hypothetical protein K20221 IPO4; importin-4 D PFL1_03737 hypothetical protein K20223 IPO7; importin-7 D PFL1_03457 hypothetical protein K20224 IPO9; importin-9 D PFL1_05212 hypothetical protein K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] C 5-FMC complex D PFL1_03397 hypothetical protein K14827 IPI1; pre-rRNA-processing protein IPI1 D PFL1_00304 hypothetical protein K14829 IPI3; pre-rRNA-processing protein IPI3 D PFL1_06356 hypothetical protein K16912 LAS1; ribosomal biogenesis protein LAS1 C Ribosome quality control proteins D PFL1_06078 hypothetical protein K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27] D PFL1_06633 hypothetical protein K24970 TCF25; transcription factor 25 D PFL1_00936 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase D PFL1_03444 hypothetical protein K14015 NPLOC4; nuclear protein localization protein 4 D PFL1_01947 hypothetical protein K14016 UFD1; ubiquitin fusion degradation protein 1 D PFL1_04247 hypothetical protein K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29] D PFL1_02919 hypothetical protein K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1 C Other pre-60S particles D PFL1_03125 hypothetical protein K14820 BRX1; ribosome biogenesis protein BRX1 D PFL1_01436 hypothetical protein K14821 BUD20; bud site selection protein 20 D PFL1_06638 hypothetical protein K14822 CGR1; rRNA-processing protein CGR1 D PFL1_04364 hypothetical protein K14823 EBP2; rRNA-processing protein EBP2 D PFL1_04883 hypothetical protein K14824 ERB1; ribosome biogenesis protein ERB1 D PFL1_00205 hypothetical protein K14826 FPR3_4; FK506-binding nuclear protein [EC:5.2.1.8] D PFL1_00883 hypothetical protein K14830 MAK11; protein MAK11 D PFL1_05351 hypothetical protein K14831 MAK16; protein MAK16 D PFL1_02602 hypothetical protein K14832 MAK21; ribosome biogenesis protein MAK21 D PFL1_04301 hypothetical protein K14572 MDN1; midasin D PFL1_04723 hypothetical protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D PFL1_01682 hypothetical protein K14833 NOC2; nucleolar complex protein 2 D PFL1_02241 hypothetical protein K14834 NOC3; nucleolar complex protein 3 D PFL1_00804 hypothetical protein K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] D PFL1_06199 hypothetical protein K14573 NOP4; nucleolar protein 4 D PFL1_05355 hypothetical protein K14837 NOP12; nucleolar protein 12 D PFL1_00855 hypothetical protein K14838 NOP15; nucleolar protein 15 D PFL1_00355 hypothetical protein K14839 NOP16; nucleolar protein 16 D PFL1_05371 hypothetical protein K14840 NOP53; nucleolar protein 53 D PFL1_03237 hypothetical protein K14842 NSA2; ribosome biogenesis protein NSA2 D PFL1_03372 hypothetical protein K14843 PES1; pescadillo D PFL1_00658 hypothetical protein K14791 PWP1; periodic tryptophan protein 1 D PFL1_04913 hypothetical protein K14845 RAI1; RAT1-interacting protein D PFL1_04051 hypothetical protein K14571 RIX7; ribosome biogenesis ATPase D PFL1_00537 hypothetical protein K14846 RPF1; ribosome production factor 1 D PFL1_00657 hypothetical protein K14847 RPF2; ribosome production factor 2 D PFL1_03376 hypothetical protein K14848 RRB1; ribosome assembly protein RRB1 D PFL1_05143 hypothetical protein K14849 RRP1; ribosomal RNA-processing protein 1 D PFL1_06885 hypothetical protein K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287] D PFL1_05983 hypothetical protein K14794 RRP12; ribosomal RNA-processing protein 12 D PFL1_04309 hypothetical protein K14852 RRS1; regulator of ribosome biosynthesis D PFL1_02537 hypothetical protein K14855 RSA4; ribosome assembly protein 4 D PFL1_06627 hypothetical protein K14856 SDA1; protein SDA1 D PFL1_03285 hypothetical protein K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] D PFL1_06409 hypothetical protein K14859 SSF1_2; ribosome biogenesis protein SSF1/2 D PFL1_00807 hypothetical protein K14860 TMA16; translation machinery-associated protein 16 D PFL1_02433 hypothetical protein K14861 URB1; nucleolar pre-ribosomal-associated protein 1 D PFL1_01368 hypothetical protein K14863 WDR12; ribosome biogenesis protein B Other ribosome biogenesis factors C PFL1_01205 hypothetical protein K15262 BCP1; protein BCP1 C PFL1_02052 hypothetical protein K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311] C PFL1_02317 hypothetical protein K15508 MRM2; 21S rRNA (uridine2791-2'-O)-methyltransferase [EC:2.1.1.168] C PFL1_02973 hypothetical protein K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286] C PFL1_03192 hypothetical protein K19307 BMT5; 25S rRNA (uracil2634-N3)-methyltransferase [EC:2.1.1.313] C PFL1_04605 hypothetical protein K26736 PA2G4; ERBB-3 binding protein C PFL1_03330 hypothetical protein K19828 MTG1; mitochondrial GTPase 1 C PFL1_05669 hypothetical protein K03979 obgE; GTPase [EC:3.6.5.-] C PFL1_06554 hypothetical protein K15267 MTEF1; mitochondrial transcription factor 1 C PFL1_04902 hypothetical protein K18803 HPM1; protein-histidine N-methyltransferase [EC:2.1.1.85] C PFL1_00516 hypothetical protein K27349 RKM2; ribosomal lysine N-methyltransferase 2 [EC:2.1.1.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs D PFL1_06687 hypothetical protein K14564 NOP56; nucleolar protein 56 D PFL1_06299 hypothetical protein K02936 RP-L7Ae; large subunit ribosomal protein L7Ae C Box H/ACA snoRNPs D PFL1_03491 hypothetical protein K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D PFL1_05594 hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B rRNA transcription factors B rRNA modification factors C 16S rRNA modification factors C 23S rRNA modification factors B ribosomal protein modification factors B rRNA processing factors B rRNA helicases B GTPases C PFL1_05669 hypothetical protein K03979 obgE; GTPase [EC:3.6.5.-] B Other maturation factors C PFL1_02510 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024