+D GENES KO
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KEGG Orthology (KO) - Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pfr00010]
D PFREUD_04290 pgi; Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PFREUD_08290 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PFREUD_12040 pfp_(pfk); pyrophosphate phosphofructokinase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D PFREUD_23890 fba2; Fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PFREUD_19150 fba1; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PFREUD_15110 tpi1; triosephosphate isomerase 1 K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PFREUD_15130 gap; Glyceraldehyde-3-phosphate dehydrogenase / erythrose 4 phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PFREUD_15120 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PFREUD_18810 gpm2; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_24080 gpm1; phosphoglycerate mutase/fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_17320 eno1; Enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_17250 eno2; Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_15390 pyk1; Pyruvate kinase 1 K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PFREUD_03230 ppdk; Pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D PFREUD_09470 aceE; dehydrogenase E1 component (2-oxo-acid dehydrogenase E1 subunit, homodimeric type) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PFREUD_15940 pdhB; Dihydrolipoamide acyltransferase, E2 component of pyruvate dehydrogenase complex (or 2-oxoacid dehydrogenase complex) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_01840 nifJ1; Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_07070 nifJ2; Pyruvate:ferredoxin (Flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_05350 Pyruvate flavodoxin/ferredoxin oxidoreductase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PFREUD_05340 Thiamine pyrophosphate (TPP family) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PFREUD_12840 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_11570 ldh1; L-Lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PFREUD_10610 pgm1; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PFREUD_02600 ppgK; Polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D PFREUD_22330 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
C 00020 Citrate cycle (TCA cycle) [PATH:pfr00020]
D PFREUD_01090 gltA2; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PFREUD_23910 gltA1; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PFREUD_12590 acn; Aconitase, Aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PFREUD_06870 icd; Putative isocitrate/isopropylmalate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PFREUD_10250 odhA; 2-oxoglutarate dehydrogenase, E1 and E2 components K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_05350 Pyruvate flavodoxin/ferredoxin oxidoreductase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PFREUD_05340 Thiamine pyrophosphate (TPP family) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PFREUD_03110 cat; Coenzyme A transferase (Putative succinyl-CoA or butyryl-CoA:coenzyme A transferase) K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PFREUD_09250 sdhA; Succinate dehydrogenase, subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PFREUD_14310 sdhA3; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PFREUD_09260 sdhB; Succinate dehydrogenase, subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PFREUD_14300 sdhB3; Succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PFREUD_09240 sdhC1; Succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PFREUD_14320 sdhC2; Succinate dehydrogenase cytochrome B-558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PFREUD_16300 fumC; Fumarate hydratase, class-II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PFREUD_06860 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PFREUD_09470 aceE; dehydrogenase E1 component (2-oxo-acid dehydrogenase E1 subunit, homodimeric type) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PFREUD_15940 pdhB; Dihydrolipoamide acyltransferase, E2 component of pyruvate dehydrogenase complex (or 2-oxoacid dehydrogenase complex) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PFREUD_01840 nifJ1; Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_07070 nifJ2; Pyruvate:ferredoxin (Flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:pfr00030]
D PFREUD_04290 pgi; Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PFREUD_15060 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PFREUD_15080 devB; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D PFREUD_01590 3-carboxymuconate cyclase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D PFREUD_04620 gnd1; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PFREUD_08090 gnd2; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PFREUD_11370 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PFREUD_22360 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PFREUD_04970 tal1; Transaldolase 1 K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PFREUD_19040 tal2; Transaldolase 2 K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PFREUD_22870 rpiB1; Ribose-5-phosphate isomerase 1 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_21660 rpiB3; Ribose-5-phosphate isomerase 3 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_22430 rpiB2; Ribose-5-phosphate isomerase 2 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_12930 phk; Phosphoketolase pyrophosphate K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D PFREUD_03250 rbsK; carbohydrate or pyrimidine kinases PfkB family K00852 rbsK; ribokinase [EC:2.7.1.15]
D PFREUD_10610 pgm1; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PFREUD_17400 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PFREUD_22260 ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PFREUD_04270 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PFREUD_01040 gntK; Gluconate kinase (Gluconokinase) K25031 gntK; gluconokinase [EC:2.7.1.12]
D PFREUD_23890 fba2; Fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PFREUD_19150 fba1; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PFREUD_08290 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PFREUD_12040 pfp_(pfk); pyrophosphate phosphofructokinase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:pfr00040]
D PFREUD_03100 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D PFREUD_02540 udgA_(rkpK); UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PFREUD_18070 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PFREUD_22840 hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D PFREUD_07770 araD; L-ribulose-5-phosphate 4-epimerase AraD K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D PFREUD_06590 araD1; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D PFREUD_11370 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PFREUD_06610 araA; L-arabinose isomerase (L-arabinose aldose-ketose-isomerase) K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D PFREUD_22370 araB; L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
C 00051 Fructose and mannose metabolism [PATH:pfr00051]
D PFREUD_03920 frk; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PFREUD_18490 manA; Phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PFREUD_07330 manC; Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PFREUD_08290 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PFREUD_12040 pfp_(pfk); pyrophosphate phosphofructokinase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D PFREUD_23890 fba2; Fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PFREUD_19150 fba1; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PFREUD_15110 tpi1; triosephosphate isomerase 1 K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PFREUD_22870 rpiB1; Ribose-5-phosphate isomerase 1 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_21660 rpiB3; Ribose-5-phosphate isomerase 3 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_22430 rpiB2; Ribose-5-phosphate isomerase 2 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_10820 PTS system, mannose/fructose/sorbose family, IIA component subfamily K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:pfr00052]
D PFREUD_17560 galK1; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PFREUD_19630 galK2; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PFREUD_02620 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_02350 galE1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_19910 galE3; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_18070 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PFREUD_10610 pgm1; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PFREUD_02370 lacZ; Beta-galactosidase (Lactase) LacZ K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D PFREUD_00570 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D PFREUD_08290 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PFREUD_23740 aglA; Alpha-1,4-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:pfr00053]
D PFREUD_02540 udgA_(rkpK); UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PFREUD_22840 hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D PFREUD_07770 araD; L-ribulose-5-phosphate 4-epimerase AraD K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D PFREUD_06590 araD1; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:pfr00500]
D PFREUD_23740 aglA; Alpha-1,4-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PFREUD_18070 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PFREUD_02640 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PFREUD_21490 Hypothetical protein K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D PFREUD_16180 glgC; Glucose-1-phosphate adenylyltransferase (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D PFREUD_10630 glgB; 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PFREUD_10670 glgP; Alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D PFREUD_10700 glgX_treX; Glycogen debranching enzyme GlgX Isoamylase K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D PFREUD_10650 treS; Trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D PFREUD_23610 Alpha-amylase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D PFREUD_07470 malQ1; 4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D PFREUD_21500 malQ2; 4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D PFREUD_10640 PPA1112; Uncharacterized protein probably involved in trehalose biosynthesis K16146 pep2; maltokinase [EC:2.7.1.175]
D PFREUD_10660 glgE; Glycosyl hydrolase, family 13 (putative alpha-amylase, catalytic domain) K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D PFREUD_16190 glgA; glycosyltransferase (glycogen synthase) K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D PFREUD_22680 glgX; Glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D PFREUD_12170 otsA; Trehalose-6-phosphate synthase (Alpha,alpha-trehalose-phosphate synthase) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D PFREUD_12160 otsB; Trehalose-phosphatase (Trehalose 6-phosphate phosphatase) K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D PFREUD_10610 pgm1; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PFREUD_04290 pgi; Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PFREUD_03920 frk; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pfr00520]
D PFREUD_20040 secreted glycosyl hydrolase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PFREUD_03920 frk; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PFREUD_06280 glmS; Glucosamine--fructose-6-phosphate aminotransferase (Hexosephosphate aminotransferase, D-fructose-6-phosphate amidotransferase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PFREUD_06260 glmM; Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D PFREUD_17410 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PFREUD_10900 MurA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PFREUD_05480 murB; UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PFREUD_02600 ppgK; Polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D PFREUD_10610 pgm1; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PFREUD_18070 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PFREUD_02540 udgA_(rkpK); UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PFREUD_00050 sqdB; UDP-sulfoquinovose synthase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D PFREUD_17560 galK1; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PFREUD_19630 galK2; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PFREUD_02620 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_02350 galE1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_19910 galE3; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_00570 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D PFREUD_10820 PTS system, mannose/fructose/sorbose family, IIA component subfamily K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PFREUD_04290 pgi; Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PFREUD_18490 manA; Phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PFREUD_07330 manC; Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PFREUD_16180 glgC; Glucose-1-phosphate adenylyltransferase (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:pfr00620]
D PFREUD_01840 nifJ1; Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_07070 nifJ2; Pyruvate:ferredoxin (Flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_05350 Pyruvate flavodoxin/ferredoxin oxidoreductase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PFREUD_05340 Thiamine pyrophosphate (TPP family) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PFREUD_09470 aceE; dehydrogenase E1 component (2-oxo-acid dehydrogenase E1 subunit, homodimeric type) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PFREUD_15940 pdhB; Dihydrolipoamide acyltransferase, E2 component of pyruvate dehydrogenase complex (or 2-oxoacid dehydrogenase complex) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_00690 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D PFREUD_00700 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D PFREUD_15390 pyk1; Pyruvate kinase 1 K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PFREUD_07100 accA; Acetyl-CoA carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D PFREUD_00400 acyP; Putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PFREUD_03110 cat; Coenzyme A transferase (Putative succinyl-CoA or butyryl-CoA:coenzyme A transferase) K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PFREUD_04430 Thiamine pyrophosphate enzyme K00158 spxB; pyruvate oxidase [EC:1.2.3.3]
D PFREUD_12840 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_11570 ldh1; L-Lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_16710 dld; d-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D PFREUD_04320 Arth_4141; FAD linked oxidase domain protein K18930 dld; D-lactate dehydrogenase
D PFREUD_02470 Beta-lactamase-like K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PFREUD_11630 Beta-lactamase-like K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PFREUD_08630 PPA0888; NAD-dependent malic enzyme (NAD-ME) (Malate dehydrogenase) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D PFREUD_06860 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PFREUD_16300 fumC; Fumarate hydratase, class-II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PFREUD_02290 Hypothetical secreted protein K20370 PEPCK; phosphoenolpyruvate carboxykinase (diphosphate) [EC:4.1.1.38]
D PFREUD_03230 ppdk; Pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_08920 leuA1; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D PFREUD_13340 leuA2; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pfr00630]
D PFREUD_06860 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PFREUD_01090 gltA2; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PFREUD_23910 gltA1; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PFREUD_12590 acn; Aconitase, Aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_10590 Methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D PFREUD_07100 accA; Acetyl-CoA carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D PFREUD_07170 pccB; Propionyl-CoA carboxylase beta chain K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D PFREUD_07650 mutB; Methylmalonyl-CoA mutase large subunit (Methylmalonyl-CoA mutase alpha subunit) (MCM-alpha) (MUTB-(R)-2-Methyl-3-oxopropanoyl-CoA CoA-carbonylmutase) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_07660 mutA; Methylmalonyl-CoA mutase small subunit (Methylmalonyl-CoA mutase beta subunit) (MCB-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_23800 katA; Catalase K03781 katE; catalase [EC:1.11.1.6]
D PFREUD_16290 gya; Glyoxylate reductase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D PFREUD_15970 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_16030 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_18740 glyA; Glycine hydroxymethyltransferase precursor K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PFREUD_12300 gcvP; Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase) (Glycine cleavage system P-protein) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PFREUD_15930 gcvT1; Glycine cleavage system T protein, aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_12350 gcvH; Glycine cleavage H-protein (lipoate-binding) K02437 gcvH; glycine cleavage system H protein
D PFREUD_22980 hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D PFREUD_15870 Hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PFREUD_16490 glxK_garK; Glycerate kinase GlxK/GarK K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PFREUD_04270 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PFREUD_10250 odhA; 2-oxoglutarate dehydrogenase, E1 and E2 components K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C 00640 Propanoate metabolism [PATH:pfr00640]
D PFREUD_00690 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D PFREUD_00700 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D PFREUD_02190 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PFREUD_02200 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta) Pyruvate dehydrogenase E1 component subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PFREUD_02210 bkdB; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase. Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (E2) (Dihydrolipoamide branched chain transacylase) K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_07100 accA; Acetyl-CoA carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D PFREUD_18870 Methylmalonyl-CoA carboxytransferase 5S subunit. (transcarboxylase 5S) 505 bp K03416 E2.1.3.1-5S; methylmalonyl-CoA carboxyltransferase 5S subunit [EC:2.1.3.1]
D PFREUD_18860 mmdA; Methylmalonyl-CoA carboxytransferase 12S subunit (EC2.1.3.1) (Transcarboxylase 12S subunit). 610 bp K17489 E2.1.3.1-12S; methylmalonyl-CoA carboxyltransferase 12S subunit [EC:2.1.3.1]
D PFREUD_18850 Hypothetical protein K17489 E2.1.3.1-12S; methylmalonyl-CoA carboxyltransferase 12S subunit [EC:2.1.3.1]
D PFREUD_18840 bccp; Methylmalonyl-CoA carboxytransferase, 1.3S subunit (Transcarboxylase, 1.3S subunit). 123bp K17490 E2.1.3.1-1.3S; methylmalonyl-CoA carboxyltransferase 1.3S subunit [EC:2.1.3.1]
D PFREUD_21920 aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PFREUD_09540 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PFREUD_07170 pccB; Propionyl-CoA carboxylase beta chain K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D PFREUD_10590 Methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D PFREUD_07650 mutB; Methylmalonyl-CoA mutase large subunit (Methylmalonyl-CoA mutase alpha subunit) (MCM-alpha) (MUTB-(R)-2-Methyl-3-oxopropanoyl-CoA CoA-carbonylmutase) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_07660 mutA; Methylmalonyl-CoA mutase small subunit (Methylmalonyl-CoA mutase beta subunit) (MCB-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_19100 iolA_(msdA); iolA (Myo-inositol catabolism IolA protein) (Methylmalonic acid semialdehyde dehydrogenase) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PFREUD_12840 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_11570 ldh1; L-Lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_09020 pduC; Glycerol dehydratase large subunit K01699 pduC; propanediol dehydratase large subunit [EC:4.2.1.28]
D PFREUD_09030 pduD; Propanediol utilization: dehydratase PduD K13919 pduD; propanediol dehydratase medium subunit [EC:4.2.1.28]
D PFREUD_09040 pduE; Propanediol utilization: dehydratase PduE K13920 pduE; propanediol dehydratase small subunit [EC:4.2.1.28]
D PFREUD_09130 pduP; CoA-dependent propionaldehyde dehydrogenase PduP K13922 pduP; propionaldehyde dehydrogenase [EC:1.2.1.87]
C 00650 Butanoate metabolism [PATH:pfr00650]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_09250 sdhA; Succinate dehydrogenase, subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PFREUD_14310 sdhA3; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PFREUD_09260 sdhB; Succinate dehydrogenase, subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PFREUD_14300 sdhB3; Succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PFREUD_09240 sdhC1; Succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PFREUD_14320 sdhC2; Succinate dehydrogenase cytochrome B-558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PFREUD_23230 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PFREUD_21920 aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PFREUD_09540 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PFREUD_15340 gab; Aldehyde dehydrogenase (Succinate-semialdehyde dehydrogenase) (NAD-dependent aldehyde dehydrogenase) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PFREUD_03110 cat; Coenzyme A transferase (Putative succinyl-CoA or butyryl-CoA:coenzyme A transferase) K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PFREUD_01840 nifJ1; Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_07070 nifJ2; Pyruvate:ferredoxin (Flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_05350 Pyruvate flavodoxin/ferredoxin oxidoreductase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PFREUD_05340 Thiamine pyrophosphate (TPP family) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PFREUD_13410 ilvB; Acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PFREUD_13400 ilvN; Acetolactate synthase subunit small K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PFREUD_11610 aldC; Alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
C 00660 C5-Branched dibasic acid metabolism [PATH:pfr00660]
D PFREUD_13410 ilvB; Acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PFREUD_13400 ilvN; Acetolactate synthase subunit small K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PFREUD_11610 aldC; Alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D PFREUD_13280 leuC; 3-isopropylmalate dehydratase large subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PFREUD_13270 leuD; 3-isopropylmalate dehydratase small subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PFREUD_13360 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pfr00562]
D PFREUD_02800 impA; Inositol-1-monophosphatase (IMPase) (Inositol-1-phosphatase) (I-1-Pase) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PFREUD_19880 inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D PFREUD_12420 pgs2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase K27681 pgsA; phosphatidylinositol phosphate synthase [EC:2.7.8.-]
D PFREUD_19030 iolG1; iolG1 (Myo-inositol catabolism IolG1 protein) (myo-inositol 2-dehydrogenase) K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D PFREUD_19010 iolE; IolE (Myo-inositol catabolism IolAEprotein) (Inosose dehydratase) (2-keto-myo-inositol dehydratase) K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D PFREUD_19090 iolD; iolD (Myo-inositol catabolism iolD protein) (acetolactate synthase protein) (pyruvate:pyruvate acetaldehydetransferase (decarboxylating)) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D PFREUD_19080 iolB; iolB (Myo-inositol catabolism IolB protein) K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D PFREUD_19060 iolC; iolC (Myo-inositol catabolism iolC protein) K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D PFREUD_19100 iolA_(msdA); iolA (Myo-inositol catabolism IolA protein) (Methylmalonic acid semialdehyde dehydrogenase) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PFREUD_15110 tpi1; triosephosphate isomerase 1 K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pfr00190]
D PFREUD_05160 nuoA; NADH-quinone oxidoreductase chain K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D PFREUD_05170 nuoB; NADH-quinone oxidoreductase chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D PFREUD_05180 nuoC; NADH-quinone oxidoreductase chain C (NADH dehydrogenase I, chain C) K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D PFREUD_05190 nuoD; NADH-quinone oxidoreductase chain D (EC 1.6.99.5) (NADH dehydrogenase I, chain D) K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D PFREUD_05200 nuoE; NADH-quinone oxidoreductase chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D PFREUD_05210 nuoF; NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D PFREUD_05220 nuoG; NADH-quinone oxidoreductase chain G (NADH dehydrogenase I, chain G) K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D PFREUD_05230 nuoH; NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I subunit H) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D PFREUD_05240 nuoI; NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PFREUD_05250 nuoJ; NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J) K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D PFREUD_05260 nuoK; NADH dehydrogenase I chain K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D PFREUD_05270 nuoL; NADH dehydrogenase (quinone) K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D PFREUD_05280 nuoM; NADH dehydrogenase I chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D PFREUD_05290 nuoN; NADH dehydrogenase I chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D PFREUD_09250 sdhA; Succinate dehydrogenase, subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PFREUD_14310 sdhA3; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PFREUD_09260 sdhB; Succinate dehydrogenase, subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PFREUD_14300 sdhB3; Succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PFREUD_09240 sdhC1; Succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PFREUD_14320 sdhC2; Succinate dehydrogenase cytochrome B-558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PFREUD_01720 cydA; Cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PFREUD_01730 cydB; Cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PFREUD_10470 atpA; ATP synthase subunit alpha (ATPase subunit alpha) (ATP synthase F1 sector subunit alpha) K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PFREUD_10490 atpD; ATP synthase subunit beta (ATPase subunit beta) (ATP synthase F1 sector subunit beta) K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PFREUD_10480 atpG; ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PFREUD_10460 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PFREUD_10500 atpC; ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PFREUD_10430 atpB; ATP synthase A chain (ATPase protein 6) (F1F0-ATPase subunit a) K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PFREUD_10450 atpF; ATP synthase B chain (F0F1 ATP synthase subunit B) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PFREUD_10440 atpE; ATP synthase C chain (F1F0-ATPase subunit c) K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PFREUD_20370 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PFREUD_23500 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PFREUD_03080 ppaX; pyrophosphatase PpaX K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1]
D PFREUD_19930 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:pfr00710]
D PFREUD_15120 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PFREUD_15130 gap; Glyceraldehyde-3-phosphate dehydrogenase / erythrose 4 phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PFREUD_23890 fba2; Fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PFREUD_19150 fba1; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PFREUD_22360 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PFREUD_22870 rpiB1; Ribose-5-phosphate isomerase 1 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_21660 rpiB3; Ribose-5-phosphate isomerase 3 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_22430 rpiB2; Ribose-5-phosphate isomerase 2 K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PFREUD_15110 tpi1; triosephosphate isomerase 1 K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PFREUD_11370 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PFREUD_04970 tal1; Transaldolase 1 K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PFREUD_19040 tal2; Transaldolase 2 K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PFREUD_03230 ppdk; Pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D PFREUD_06860 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:pfr00720]
D PFREUD_01840 nifJ1; Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_07070 nifJ2; Pyruvate:ferredoxin (Flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PFREUD_03230 ppdk; Pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D PFREUD_06860 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PFREUD_16300 fumC; Fumarate hydratase, class-II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PFREUD_09250 sdhA; Succinate dehydrogenase, subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PFREUD_14310 sdhA3; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PFREUD_09260 sdhB; Succinate dehydrogenase, subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PFREUD_14300 sdhB3; Succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PFREUD_09240 sdhC1; Succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PFREUD_14320 sdhC2; Succinate dehydrogenase cytochrome B-558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_05350 Pyruvate flavodoxin/ferredoxin oxidoreductase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PFREUD_05340 Thiamine pyrophosphate (TPP family) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PFREUD_06870 icd; Putative isocitrate/isopropylmalate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PFREUD_12590 acn; Aconitase, Aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PFREUD_10590 Methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D PFREUD_07650 mutB; Methylmalonyl-CoA mutase large subunit (Methylmalonyl-CoA mutase alpha subunit) (MCM-alpha) (MUTB-(R)-2-Methyl-3-oxopropanoyl-CoA CoA-carbonylmutase) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_07660 mutA; Methylmalonyl-CoA mutase small subunit (Methylmalonyl-CoA mutase beta subunit) (MCB-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_04720 fhs; Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D PFREUD_06840 folD; Methylenetetrahydrofolate dehydrogenase (Bifunctional protein) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PFREUD_15670 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PFREUD_00700 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D PFREUD_00690 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:pfr00680]
D PFREUD_18740 glyA; Glycine hydroxymethyltransferase precursor K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PFREUD_17320 eno1; Enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_17250 eno2; Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_06860 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PFREUD_23890 fba2; Fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PFREUD_19150 fba1; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PFREUD_08290 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PFREUD_00690 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D PFREUD_00700 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D PFREUD_18810 gpm2; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_24080 gpm1; phosphoglycerate mutase/fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_10080 D-3-phosphoglycerate dehydrogenase / erythronate 4-phosphate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PFREUD_21910 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PFREUD_18160 serC; Phosphoserine aminotransferase (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PFREUD_10330 serB_thrH; Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
C 00910 Nitrogen metabolism [PATH:pfr00910]
D PFREUD_03790 aniA; Copper-containing nitrite reductase precursor (Major outer membrane protein Pan 1) K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D PFREUD_00980 norB; Nitric-oxide reductase subunit B (nitric-oxide reductase) K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D PFREUD_17610 gdh; glutamate dehydrogenase (NAD(P)-glutamate dehydrogenase) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PFREUD_15970 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_16030 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_11860 gltB; Glutamate synthase large subunit (Ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PFREUD_11850 gltD; Glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
C 00920 Sulfur metabolism [PATH:pfr00920]
D PFREUD_21610 Sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D PFREUD_21600 cysT; Sulphate transport system permease protein 2:Sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D PFREUD_21590 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D PFREUD_21580 cysA; Sulfate/thiosulfate import ATP-binding protein CysA (Sulfate-transporting ATPase) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D PFREUD_05910 NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D PFREUD_21650 cysN; Sulfate adenylyltransferase, large subunit/ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D PFREUD_21640 mmcV_cysD; Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) (Mitomycin biosynthesis protein V) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PFREUD_21630 cysH; Putative phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D PFREUD_21620 nirA2_sir2; Sulfite reductase [ferredoxin] K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D PFREUD_23220 sseB; Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PFREUD_06550 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PFREUD_06560 cys1; Cysteine synthase 1 K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PFREUD_12630 cysK; Cysteine synthase (O-acetylserine sulfhydrylase) K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PFREUD_16420 cys2; cysteine synthase 2 K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PFREUD_11000 pf3022; Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PFREUD_18590 metB; Cystathionine gamma-synthase (O-succinylhomoserine (thiol)-lyase) K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PFREUD_20610 dmsA; Anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D PFREUD_20600 dmsB; Anaerobic dimethyl sulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pfr00061]
D PFREUD_07100 accA; Acetyl-CoA carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D PFREUD_09420 acpP; Acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D PFREUD_09440 pf3004; Carboxylic ester hydrolase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PFREUD_09430 fabH; 3-oxoacyl-(Acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PFREUD_09410 fabF_(fabB); 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PFREUD_14870 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PFREUD_14880 Dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PFREUD_08060 long-chain fatty-acid CoA ligase (AMP-binding enzyme) (long-chain-fatty-acid---CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_23000 PPA2234; Putative long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:pfr00071]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_08060 long-chain fatty-acid CoA ligase (AMP-binding enzyme) (long-chain-fatty-acid---CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_23000 PPA2234; Putative long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:pfr00074]
D PFREUD_07100 accA; Acetyl-CoA carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D PFREUD_06290 acpS; Phosphopantethiene--protein transferase domain (holo-[acyl-carrier-protein] synthase) K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D PFREUD_09420 acpP; Acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D PFREUD_09440 pf3004; Carboxylic ester hydrolase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PFREUD_14860 inhA; Enoyl-[acyl-carrier-protein] reductase (NADH) K11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]
D PFREUD_07170 pccB; Propionyl-CoA carboxylase beta chain K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:pfr00561]
D PFREUD_15870 Hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PFREUD_16490 glxK_garK; Glycerate kinase GlxK/GarK K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PFREUD_07980 dhaK; DhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D PFREUD_07990 dhaL; PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D PFREUD_14600 glpK; Glycerol kinase (ATP:glycerol 3-phosphotransferase) (Glycerokinase) (GK) K00864 glpK; glycerol kinase [EC:2.7.1.30]
D PFREUD_13730 nagD; Phosphatase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D PFREUD_00670 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PFREUD_15730 pls; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PFREUD_15740 plsC3; Acyltransferase PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PFREUD_13490 Hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PFREUD_00050 sqdB; UDP-sulfoquinovose synthase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
C 00564 Glycerophospholipid metabolism [PATH:pfr00564]
D PFREUD_00770 gpsA; Glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D PFREUD_12990 glpA; Anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D PFREUD_12980 glpB; Anaerobic glycerol-3-phosphate dehydrogenase subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D PFREUD_12970 glpC; Anaerobic glycerol-3-phosphate dehydrogenase subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D PFREUD_00670 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PFREUD_15730 pls; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PFREUD_15740 plsC3; Acyltransferase PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PFREUD_13490 Hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PFREUD_01570 ugpQ1; Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D PFREUD_10930 glpQ; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D PFREUD_23160 ugpQ2; Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D PFREUD_14740 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D PFREUD_13190 Phosphatidylglycerophosphate synthase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D PFREUD_06790 Phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D PFREUD_12390 pgs1; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
D PFREUD_22380 araM; L-arabinose utilization protein K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
C 00565 Ether lipid metabolism
D PFREUD_16670 alkylglycerone-phosphate synthase (FAD linked oxidase-like protein) K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
C 00600 Sphingolipid metabolism
D PFREUD_02370 lacZ; Beta-galactosidase (Lactase) LacZ K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D PFREUD_12910 pf1637; Putative carboxylic ester hydrolase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pfr00230]
D PFREUD_10610 pgm1; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PFREUD_17400 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PFREUD_22260 ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PFREUD_04770 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PFREUD_04000 purD; Phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D PFREUD_06820 purN; 5-phosphoribosylglycinamide formyltransferase (phosphoribosylglycinamide formyltransferase) K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PFREUD_04680 purL; Phosphoribosylformylglycinamidine synthase II (FGAM synthase II) K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D PFREUD_04040 purS; Phosphoribosylformylglycinamidine synthetase PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D PFREUD_04050 purL_purQ; Phosphoribosylformylglycinamidine synthase 1 (Phosphoribosylformylglycinamidine synthase I) (FGAM synthase I) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PFREUD_04780 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D PFREUD_07300 purK; Phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D PFREUD_07310 purE; Phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D PFREUD_04030 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D PFREUD_04010 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PFREUD_06830 purH; Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PFREUD_11660 apt; Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase) K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PFREUD_15460 Hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PFREUD_19310 iunH; Inosine/uridine-preferring nucleoside hydrolase (purine nucleosidase) K01239 E3.2.2.1; purine nucleosidase [EC:3.2.2.1]
D PFREUD_20330 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D PFREUD_06480 guaB1; Inosine-5-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) / GMP reductase) K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PFREUD_06490 guaB2; Inosine-5-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) / GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PFREUD_08360 ndk; Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PFREUD_07600 HAM1, NTPase/HAM1 K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D PFREUD_06680 guaA; GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase) (GMP synthetase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PFREUD_22250 guA; Glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PFREUD_15850 guaB3; Inosine-5-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) / GMP reductase K26110 guaB1; GMP reductase [EC:1.7.1.7]
D PFREUD_11430 gmk; Guanylate kinase, Guanosine monophosphate kinase (GMP kinase) K00942 gmk; guanylate kinase [EC:2.7.4.8]
D PFREUD_13010 nrdJ; Vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PFREUD_09280 dgt; Deoxyguanosinetriphosphate triphosphohydrolase (dGTPase) K01129 dgt; dGTPase [EC:3.1.5.1]
D PFREUD_11650 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PFREUD_17290 ppx; Ppx/GppA phosphatase family K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D PFREUD_19280 purA; Adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS) (AMPSase) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PFREUD_04380 add; Adenosine deaminase (Adenosine aminohydrolase) K01488 add; adenosine deaminase [EC:3.5.4.4]
D PFREUD_05980 adk; Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D PFREUD_08780 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D PFREUD_12430 HIT family protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D PFREUD_21650 cysN; Sulfate adenylyltransferase, large subunit/ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D PFREUD_21640 mmcV_cysD; Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) (Mitomycin biosynthesis protein V) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:pfr00240]
D PFREUD_11470 carB_(pyrA); Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PFREUD_11480 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PFREUD_17440 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PFREUD_08620 pyrC; Dihydroorotase multifunctional complex type (dihydroorotase) K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PFREUD_01850 Dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D PFREUD_07080 Dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D PFREUD_11460 pyrD; Dihydroorotate dehydrogenase 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D PFREUD_19200 pyrE; Orotate phosphoribosyltransferase (OPRT) (OPRTase) K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D PFREUD_11450 pyrF; Orotidine 5-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D PFREUD_14760 pyrH; Uridylate kinase PyrH K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D PFREUD_08360 ndk; Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PFREUD_07150 maf; Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D PFREUD_13650 pyrG; CTP synthase (UTP--ammonia ligase) (CTP synthetase) K01937 pyrG; CTP synthase [EC:6.3.4.2]
D PFREUD_11270 cmk; Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase) K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D PFREUD_19730 upp; Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase) K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D PFREUD_13010 nrdJ; Vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PFREUD_05030 Deoxycytidylate deaminase (dCMP deaminase) K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D PFREUD_20540 tmk; Thymidylate kinase (dTMP kinase) K00943 tmk; dTMP kinase [EC:2.7.4.9]
D PFREUD_07610 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pfr00250]
D PFREUD_09210 nadB1; L-aspartate oxidase (LASPO) (Quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PFREUD_21690 nadB2; L-aspartate oxidase (LASPO) (Quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PFREUD_18730 ansA; L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PFREUD_18980 asnB; Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PFREUD_14000 got; Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PFREUD_00370 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D PFREUD_16320 aspA1; Aspartate ammonia-lyase (Aspartase) K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D PFREUD_16330 aspA2; Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D PFREUD_01460 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PFREUD_13940 argH; Argininosuccinate lyase (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PFREUD_19280 purA; Adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS) (AMPSase) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PFREUD_04010 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PFREUD_17440 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PFREUD_23230 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PFREUD_21920 aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PFREUD_09540 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PFREUD_15340 gab; Aldehyde dehydrogenase (Succinate-semialdehyde dehydrogenase) (NAD-dependent aldehyde dehydrogenase) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PFREUD_11860 gltB; Glutamate synthase large subunit (Ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PFREUD_11850 gltD; Glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PFREUD_17610 gdh; glutamate dehydrogenase (NAD(P)-glutamate dehydrogenase) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PFREUD_15970 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_16030 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_11470 carB_(pyrA); Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PFREUD_11480 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PFREUD_04050 purL_purQ; Phosphoribosylformylglycinamidine synthase 1 (Phosphoribosylformylglycinamidine synthase I) (FGAM synthase I) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PFREUD_06280 glmS; Glucosamine--fructose-6-phosphate aminotransferase (Hexosephosphate aminotransferase, D-fructose-6-phosphate amidotransferase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PFREUD_04770 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pfr00260]
D PFREUD_03880 ask; Aspartokinase (Aspartate kinase) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PFREUD_20100 asd; Aspartate-semialdehyde dehydrogenase (Semialdehyde dehydrogenase) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PFREUD_10320 thrA_hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PFREUD_10330 serB_thrH; Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D PFREUD_08280 thrC; Threonine synthase (O-phospho-L-homoserine phosphate-lyase (adding water;L-threonine-forming)) K01733 thrC; threonine synthase [EC:4.2.3.1]
D PFREUD_18740 glyA; Glycine hydroxymethyltransferase precursor K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PFREUD_15870 Hypothetical protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PFREUD_16490 glxK_garK; Glycerate kinase GlxK/GarK K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PFREUD_18810 gpm2; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_24080 gpm1; phosphoglycerate mutase/fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_10080 D-3-phosphoglycerate dehydrogenase / erythronate 4-phosphate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PFREUD_21910 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PFREUD_18160 serC; Phosphoserine aminotransferase (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PFREUD_20440 mao; flavin-containing amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PFREUD_12300 gcvP; Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase) (Glycine cleavage system P-protein) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PFREUD_15930 gcvT1; Glycine cleavage system T protein, aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_12350 gcvH; Glycine cleavage H-protein (lipoate-binding) K02437 gcvH; glycine cleavage system H protein
D PFREUD_01860 dha1; Betaine-aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D PFREUD_18570 sdaA; L-serine dehydratase (L-serine ammonia-lyase) K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PFREUD_03750 Threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PFREUD_11880 trpA; Tryptophan synthase alpha chain (TrpA) K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PFREUD_11890 trpB; Tryptophan synthase beta chain (TrpB) K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PFREUD_14220 trpB2; Tryptophan synthase beta subunit K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pfr00270]
D PFREUD_06550 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PFREUD_06560 cys1; Cysteine synthase 1 K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PFREUD_12630 cysK; Cysteine synthase (O-acetylserine sulfhydrylase) K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PFREUD_16420 cys2; cysteine synthase 2 K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PFREUD_22880 malY; Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities (cystathionine beta-lyase, CBL) K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D PFREUD_11340 metH; methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PFREUD_11410 metK; S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (MAT) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PFREUD_15460 Hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PFREUD_09460 tyrB; Aspartate transaminase (Aminotransferase) K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PFREUD_02770 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PFREUD_11050 luxS; S-ribosylhomocysteine lyase (Autoinducer-2 production protein luxS) (AI-2 synthesis protein) K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D PFREUD_03880 ask; Aspartokinase (Aspartate kinase) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PFREUD_20100 asd; Aspartate-semialdehyde dehydrogenase (Semialdehyde dehydrogenase) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PFREUD_10320 thrA_hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PFREUD_11000 pf3022; Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PFREUD_18590 metB; Cystathionine gamma-synthase (O-succinylhomoserine (thiol)-lyase) K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PFREUD_13350 ilvE_(bcaT); Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PFREUD_23220 sseB; Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PFREUD_12840 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_11570 ldh1; L-Lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_06860 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PFREUD_18570 sdaA; L-serine dehydratase (L-serine ammonia-lyase) K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PFREUD_10080 D-3-phosphoglycerate dehydrogenase / erythronate 4-phosphate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PFREUD_21910 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PFREUD_18160 serC; Phosphoserine aminotransferase (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:pfr00280]
D PFREUD_13350 ilvE_(bcaT); Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PFREUD_02190 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PFREUD_02200 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta) Pyruvate dehydrogenase E1 component subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PFREUD_02210 bkdB; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase. Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (E2) (Dihydrolipoamide branched chain transacylase) K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_07100 accA; Acetyl-CoA carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D PFREUD_07170 pccB; Propionyl-CoA carboxylase beta chain K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D PFREUD_10590 Methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D PFREUD_07650 mutB; Methylmalonyl-CoA mutase large subunit (Methylmalonyl-CoA mutase alpha subunit) (MCM-alpha) (MUTB-(R)-2-Methyl-3-oxopropanoyl-CoA CoA-carbonylmutase) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_07660 mutA; Methylmalonyl-CoA mutase small subunit (Methylmalonyl-CoA mutase beta subunit) (MCB-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_19890 mmsB; 3-hydroxyisobutyrate dehydrogenase related beta-hydroxyacid dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D PFREUD_19100 iolA_(msdA); iolA (Myo-inositol catabolism IolA protein) (Methylmalonic acid semialdehyde dehydrogenase) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PFREUD_09540 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pfr00290]
D PFREUD_03750 Threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PFREUD_13280 leuC; 3-isopropylmalate dehydratase large subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PFREUD_13270 leuD; 3-isopropylmalate dehydratase small subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PFREUD_13360 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D PFREUD_13410 ilvB; Acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PFREUD_13400 ilvN; Acetolactate synthase subunit small K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PFREUD_13390 ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PFREUD_18990 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PFREUD_13350 ilvE_(bcaT); Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PFREUD_14000 got; Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PFREUD_08920 leuA1; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D PFREUD_13340 leuA2; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pfr00300]
D PFREUD_10320 thrA_hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PFREUD_03880 ask; Aspartokinase (Aspartate kinase) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PFREUD_20100 asd; Aspartate-semialdehyde dehydrogenase (Semialdehyde dehydrogenase) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PFREUD_16160 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PFREUD_14560 dapB; Dihydrodipicolinate reductase (DHPR) K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D PFREUD_16250 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D PFREUD_13960 argD; Acetylornithine and succinylornithine aminotransferase (ACOAT) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PFREUD_01750 dapE1; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase related deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PFREUD_16240 dapE2; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PFREUD_13070 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PFREUD_10300 lysA; Diaminopimelate decarboxylase (DAP decarboxylase) K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PFREUD_15550 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PFREUD_15540 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:pfr00310]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_09540 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PFREUD_15340 gab; Aldehyde dehydrogenase (Succinate-semialdehyde dehydrogenase) (NAD-dependent aldehyde dehydrogenase) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:pfr00220]
D PFREUD_00860 argF; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PFREUD_01460 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PFREUD_13940 argH; Argininosuccinate lyase (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PFREUD_04050 purL_purQ; Phosphoribosylformylglycinamidine synthase 1 (Phosphoribosylformylglycinamidine synthase I) (FGAM synthase I) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PFREUD_15970 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_16030 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_11470 carB_(pyrA); Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PFREUD_11480 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PFREUD_17610 gdh; glutamate dehydrogenase (NAD(P)-glutamate dehydrogenase) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PFREUD_14000 got; Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PFREUD_13980 ArgJ; Arginine biosynthesis bifunctional protein ArgJ (Glutamate N-acetyltransferase) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase) K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D PFREUD_13970 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D PFREUD_13990 argC; N-acetyl-gamma-glutamyl-phosphate reductase (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D PFREUD_13960 argD; Acetylornithine and succinylornithine aminotransferase (ACOAT) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:pfr00330]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PFREUD_20440 mao; flavin-containing amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PFREUD_20090 Delta 1-pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D PFREUD_08490 proB; Glutamate 5-kinase (Gamma-glutamyl kinase) (GK) K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PFREUD_08510 proA; Gamma-glutamyl phosphate reductase (GPR) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D PFREUD_08810 pip2; Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 00340 Histidine metabolism [PATH:pfr00340]
D PFREUD_14100 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D PFREUD_14110 hisE; Phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D PFREUD_11920 hisI2; Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D PFREUD_11750 hisA; Phosphoribosyl isomerase A (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (N-(5-phosphoribosyl)anthranilate isomerase) (PRAI) K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D PFREUD_11760 hisH; Imidazole glycerol phosphate synthase subunit hisH (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D PFREUD_13430 hisF; Imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D PFREUD_11770 hisB; Imidazoleglycerol-phosphate dehydratase (IGPD) K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D PFREUD_11780 hisC; Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PFREUD_10160 monophosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D PFREUD_11790 hisD; Histidinol dehydrogenase (HDH) K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PFREUD_20440 mao; flavin-containing amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:pfr00350]
D PFREUD_11780 hisC; Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PFREUD_09460 tyrB; Aspartate transaminase (Aminotransferase) K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PFREUD_20440 mao; flavin-containing amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PFREUD_15340 gab; Aldehyde dehydrogenase (Succinate-semialdehyde dehydrogenase) (NAD-dependent aldehyde dehydrogenase) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PFREUD_15270 Hypothetical protein K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4]
C 00360 Phenylalanine metabolism [PATH:pfr00360]
D PFREUD_20440 mao; flavin-containing amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PFREUD_11780 hisC; Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PFREUD_09460 tyrB; Aspartate transaminase (Aminotransferase) K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PFREUD_21840 dadA2; DadA, Glycine/D-amino acid oxidases K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D PFREUD_14960 Dioxygenase K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
C 00380 Tryptophan metabolism [PATH:pfr00380]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_20440 mao; flavin-containing amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PFREUD_23800 katA; Catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pfr00400]
D PFREUD_15720 aroH; Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PFREUD_11520 aroB; 3-dehydroquinate synthase / shikimate kinase, bifunctionnal enzyme K13829 aroKB; shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
D PFREUD_20230 aroD; 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D PFREUD_10180 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (phosphoenolpyruvate:3-phosphoshikimate5-O-(1-carboxyvinyl)-transferase) (EPSP synthase) K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D PFREUD_11530 aroF; Chorismate synthase (5-enolpyruvylshikimate-3-phosphate phospholyase) K01736 aroC; chorismate synthase [EC:4.2.3.5]
D PFREUD_11910 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PFREUD_15830 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PFREUD_11750 hisA; Phosphoribosyl isomerase A (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (N-(5-phosphoribosyl)anthranilate isomerase) (PRAI) K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D PFREUD_11900 trpC; Indole-3-glycerol phosphate synthase (TrpC) K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D PFREUD_11880 trpA; Tryptophan synthase alpha chain (TrpA) K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PFREUD_11890 trpB; Tryptophan synthase beta chain (TrpB) K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PFREUD_14220 trpB2; Tryptophan synthase beta subunit K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PFREUD_06500 Chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D PFREUD_11280 tyrA; Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PFREUD_01330 pheA; Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D PFREUD_11780 hisC; Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PFREUD_09460 tyrB; Aspartate transaminase (Aminotransferase) K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pfr00410]
D PFREUD_23230 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PFREUD_21920 aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PFREUD_09540 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PFREUD_19100 iolA_(msdA); iolA (Myo-inositol catabolism IolA protein) (Methylmalonic acid semialdehyde dehydrogenase) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:pfr00430]
D PFREUD_23230 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PFREUD_00370 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D PFREUD_00700 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D PFREUD_00690 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pfr00450]
D PFREUD_18590 metB; Cystathionine gamma-synthase (O-succinylhomoserine (thiol)-lyase) K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PFREUD_22880 malY; Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities (cystathionine beta-lyase, CBL) K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D PFREUD_11340 metH; methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PFREUD_14940 sufS; Cysteine desulphurases, SufS K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D PFREUD_24100 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PFREUD_21650 cysN; Sulfate adenylyltransferase, large subunit/ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D PFREUD_21640 mmcV_cysD; Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) (Mitomycin biosynthesis protein V) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PFREUD_06960 metG; Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pfr00460]
D PFREUD_02640 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PFREUD_18730 ansA; L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PFREUD_18740 glyA; Glycine hydroxymethyltransferase precursor K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pfr00470]
D PFREUD_01130 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PFREUD_13250 ddlA; D-alanine--D-alanine ligase (D-alanylalanine synthetase) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PFREUD_04050 purL_purQ; Phosphoribosylformylglycinamidine synthase 1 (Phosphoribosylformylglycinamidine synthase I) (FGAM synthase I) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PFREUD_07580 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PFREUD_15520 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PFREUD_13070 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PFREUD_10300 lysA; Diaminopimelate decarboxylase (DAP decarboxylase) K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PFREUD_21840 dadA2; DadA, Glycine/D-amino acid oxidases K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:pfr00480]
D PFREUD_08100 pepN; Aminopeptidase N, Lysyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PFREUD_06870 icd; Putative isocitrate/isopropylmalate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PFREUD_04620 gnd1; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PFREUD_08090 gnd2; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PFREUD_15060 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:pfr00515]
D PFREUD_17510 dolichyl-phosphate-mannose-protein mannosyltransferase (Glycosyl transferase, family 39) K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:pfr00514]
D PFREUD_17510 dolichyl-phosphate-mannose-protein mannosyltransferase (Glycosyl transferase, family 39) K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:pfr00511]
D PFREUD_02370 lacZ; Beta-galactosidase (Lactase) LacZ K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D PFREUD_17500 Hypothetical protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:pfr00542]
D PFREUD_10390 tagO; Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pfr00541]
D PFREUD_18070 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PFREUD_02620 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_02350 galE1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_19910 galE3; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PFREUD_00570 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D PFREUD_02540 udgA_(rkpK); UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PFREUD_00470 rmlA_(rfbA); Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PFREUD_00550 rmlB_(rfbB); DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PFREUD_00540 rmlC_(cps); dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D PFREUD_18490 manA; Phosphomannose isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PFREUD_07330 manC; Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PFREUD_17410 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:pfr00550]
D PFREUD_10900 MurA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PFREUD_05480 murB; UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PFREUD_15490 murC; UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PFREUD_15520 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PFREUD_15550 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PFREUD_13250 ddlA; D-alanine--D-alanine ligase (D-alanylalanine synthetase) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PFREUD_15540 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PFREUD_14200 uppP_(BacA); Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase) (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PFREUD_15530 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase (UDP-MurNAc-pentapeptide phosphotransferase) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PFREUD_15500 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PFREUD_15560 ftsI; Cell division protein FtsI (penicillin-binding protein 2) (Peptidoglycan glycosyltransferase) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PFREUD_19600 pbpA; Penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D PFREUD_20360 dac; carboxypeptidase (serine-type D-Ala-D-Ala carboxypeptidase) (D-alanyl-D-alanine-carboxypeptidase) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PFREUD_07840 UDP-N-acetylmuramyl tripeptide synthase (Mur ligase) K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D PFREUD_07830 cobB_cobQ; (glutamine amidotransferase) (adenosylcobyric acid synthase (glutamine-hydrolysing)) K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:pfr00552]
D PFREUD_14200 uppP_(BacA); Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase) (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PFREUD_10390 tagO; Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium [PATH:pfr00572]
D PFREUD_10390 tagO; Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D PFREUD_00630 gtfD; Glycosyl transferase, family 2 K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D PFREUD_00580 gtfA; Glycosyltransferase, family 2 K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
C 00543 Exopolysaccharide biosynthesis [PATH:pfr00543]
D PFREUD_10390 tagO; Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D PFREUD_06550 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pfr00730]
D PFREUD_20900 thiC; thiamine-phosphate diphosphorylase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D PFREUD_03360 thiD1; Phosphomethylpyrimidine kinase/hydroxymethylpyrimidine phosphokinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D PFREUD_16570 dadA1; DadA, Glycine/D-amino acid oxidases K03153 thiO; glycine oxidase [EC:1.4.3.19]
D PFREUD_12560 dxs; Deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PFREUD_16550 thiG; Thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D PFREUD_03380 thiM; Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D PFREUD_16580 thiE2; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PFREUD_03370 thiE1; Thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PFREUD_13220 thiL; Thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D PFREUD_10170 engC; GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PFREUD_05980 adk; Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D PFREUD_12090 tenA; Phosphomethylpyrimidine kinase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:pfr00740]
D PFREUD_21450 ribAB; GTP cyclohydrolase II protein, Riboflavin biosynthesis protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PFREUD_21470 ribD; Riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase) (5-amino-6-(5-phosphoribosylamino)uracil reductase) K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PFREUD_21440 ribH; 6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain) K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D PFREUD_21460 ribC_(ribE); Riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D PFREUD_14590 ribF; Riboflavin biosynthesis protein (Riboflavin kinase) FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D PFREUD_05910 NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D PFREUD_03380 thiM; Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
C 00750 Vitamin B6 metabolism [PATH:pfr00750]
D PFREUD_08080 thiD2; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D PFREUD_10910 pdxY; Pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D PFREUD_18160 serC; Phosphoserine aminotransferase (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PFREUD_08280 thrC; Threonine synthase (O-phospho-L-homoserine phosphate-lyase (adding water;L-threonine-forming)) K01733 thrC; threonine synthase [EC:4.2.3.1]
D PFREUD_15040 pdxS; Pyridoxal biosynthesis lyase pdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D PFREUD_15030 pdxT; Glutamine amidotransferase subunit pdxT (Glutamine amidotransferase glutaminase subunit pdxT) K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pfr00760]
D PFREUD_09210 nadB1; L-aspartate oxidase (LASPO) (Quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PFREUD_21690 nadB2; L-aspartate oxidase (LASPO) (Quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PFREUD_09220 nadA; Quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D PFREUD_09200 nadC; Nicotinate-nucleotide pyrophosphorylase [carboxylating] (nicotinate-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase(carboxylating)) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D PFREUD_07550 pncB; Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D PFREUD_08530 nadD; Probable nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D PFREUD_09830 NUDIX protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D PFREUD_22890 nadE; Glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D PFREUD_13180 cinA; CinA, Competence-damaged protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D PFREUD_22960 pncA; pyrazinamidase/nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D PFREUD_01440 npdA; Silent information regulator protein Sir2/NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D PFREUD_13670 ppnK; Probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase) K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D PFREUD_21540 pntA; NAD(P)(+) transhydrogenase (AB-specific). K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PFREUD_21530 pntB; NADH dehydrogenase K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D PFREUD_15340 gab; Aldehyde dehydrogenase (Succinate-semialdehyde dehydrogenase) (NAD-dependent aldehyde dehydrogenase) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:pfr00770]
D PFREUD_13410 ilvB; Acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PFREUD_13400 ilvN; Acetolactate synthase subunit small K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PFREUD_13390 ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PFREUD_18990 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PFREUD_01290 panE1; 2-dehydropantoate 2-reductase (KPA reductase) (Ketopantoate reductase) K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PFREUD_04940 ApbA; Putative 2-dehydropantoate 2-reductase (Ketopantoate reductase) (KPA reductase) (KPR) K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PFREUD_12810 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PFREUD_23080 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PFREUD_06270 coaA; Pantothenate kinase (Pantothenic acid kinase) K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D PFREUD_01140 Hypothetical protein K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D PFREUD_14480 coaD; Phosphopantetheine adenylyltransferase (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D PFREUD_15310 coaE; Dephospho-CoA kinase (Dephosphocoenzyme A kinase) K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D PFREUD_06290 acpS; Phosphopantethiene--protein transferase domain (holo-[acyl-carrier-protein] synthase) K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D PFREUD_13350 ilvE_(bcaT); Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:pfr00780]
D PFREUD_09410 fabF_(fabB); 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PFREUD_14870 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PFREUD_14880 Dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PFREUD_10010 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D PFREUD_07250 birA; BirA, Biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:pfr00785]
D PFREUD_05550 lipB; Lipoyltransferase (Lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PFREUD_05560 lipA; Lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PFREUD_10520 lplA; Lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_09470 aceE; dehydrogenase E1 component (2-oxo-acid dehydrogenase E1 subunit, homodimeric type) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PFREUD_15940 pdhB; Dihydrolipoamide acyltransferase, E2 component of pyruvate dehydrogenase complex (or 2-oxoacid dehydrogenase complex) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PFREUD_10250 odhA; 2-oxoglutarate dehydrogenase, E1 and E2 components K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D PFREUD_02190 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PFREUD_02200 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta) Pyruvate dehydrogenase E1 component subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PFREUD_02210 bkdB; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase. Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (E2) (Dihydrolipoamide branched chain transacylase) K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PFREUD_12300 gcvP; Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase) (Glycine cleavage system P-protein) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PFREUD_15930 gcvT1; Glycine cleavage system T protein, aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PFREUD_12350 gcvH; Glycine cleavage H-protein (lipoate-binding) K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pfr00790]
D PFREUD_20310 folE; GTP cyclohydrolase I (GTP-CH-I) K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D PFREUD_20280 folB; Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D PFREUD_20270 folK; Putative hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PFREUD_02120 folP1; Dihydropteroate synthase ((2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl-diphosphate:4-aminobenzoate 2-amino-4-hydroxydihydropteridine-6-methenyltransferase) K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PFREUD_20290 folP2; Dihydropteroate synthase((2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl-diphosphate:4-aminobenzoate 2-amino-4-hydroxydihydropteridine-6-methenyltransferase) K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PFREUD_07620 folA_(folA2); Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PFREUD_08350 folC; Folylpolyglutamate synthase (bifunctionnal enzyme) K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D PFREUD_21450 ribAB; GTP cyclohydrolase II protein, Riboflavin biosynthesis protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PFREUD_02250 pabA; Glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D PFREUD_01300 PPA1976; Para-aminobenzoate synthase K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85]
D PFREUD_05690 pabC; Branched-chain amino acid aminotransferase/aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D PFREUD_21800 moaC; Molybdenum cofactor biosynthesis protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PFREUD_21760 moaE2; Molybdopterin synthase MoaE, Molybdenum cofactor biosynthesis protein E 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PFREUD_18000 moeA1; Molybdenum cofactor synthesis domain K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D PFREUD_21790 moeA2; Molybdenum cofactor biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:pfr00670]
D PFREUD_07620 folA_(folA2); Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PFREUD_04720 fhs; Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D PFREUD_06840 folD; Methylenetetrahydrofolate dehydrogenase (Bifunctional protein) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PFREUD_18740 glyA; Glycine hydroxymethyltransferase precursor K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PFREUD_06820 purN; 5-phosphoribosylglycinamide formyltransferase (phosphoribosylglycinamide formyltransferase) K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PFREUD_06830 purH; Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PFREUD_11390 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PFREUD_15930 gcvT1; Glycine cleavage system T protein, aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PFREUD_11340 metH; methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PFREUD_07610 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D PFREUD_15670 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PFREUD_18010 ygfA; 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pfr00860]
D PFREUD_05680 gltX; Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_13550 gluQ; Glutamyl-Q tRNA(Asp) synthetase (Glu-Q-RSs), Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_18970 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D PFREUD_18880 hemL1; Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase)(GSA-AT) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PFREUD_19260 hemL2; glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase)(GSA-AT) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PFREUD_18910 hemB; Delta-aminolevulinic acid dehydratase (Porphobilinogen synthase) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PFREUD_18960 hemC; Porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D PFREUD_18950 hemE; Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D PFREUD_18930 hemY; Protoporphyrinogen oxidase (PPO) HemY K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D PFREUD_18920 hemH; Ferrochelatase (Protoheme ferro-lyase)(Heme synthetase). K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D PFREUD_20070 hemD; Uroporphyrinogen-III synthase HemD K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D PFREUD_04550 cobA; CobA Uroporphyrinogen III methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D PFREUD_18940 Fe-S oxidoreductase K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D PFREUD_07680 cbiL; CbiL Precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D PFREUD_07690 cbiF; CbiF Precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D PFREUD_07760 CbiJ; Precorrin-6x reductase CbiJ K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D PFREUD_07720 cbiD; cobalt-precorrin-6A synthase [deacetylating] CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D PFREUD_07750 cbiT; Precorrin 8 decarboxylase CbiT K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D PFREUD_07730 cbiC; Precorrin 8X methylmutase CbiC K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D PFREUD_12220 cbiA; Cobyrinic acid A,C-diamide synthase, CbiA K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D PFREUD_10530 Cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PFREUD_12210 cobA2; Cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PFREUD_12200 cbiP_cobQ; Cobyric acid synthase CbiP/CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D PFREUD_12190 cbiB_cobD; CbiB/CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D PFREUD_12230 cobU; CobU Bifunctional cobalamin biosynthesis pyrophosphate enzyme K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D PFREUD_12240 cobS; Cobalamin 5-phosphate synthase (adenosylcobinamide-GDP ribazoletransferase) K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D PFREUD_06370 bluB_cobT2; Phosphoribosyltransferase/nitroreductase (fusion gene) (Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase) K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D PFREUD_19350 copA; multicopper oxidase K22552 mmcO; multicopper oxidase [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pfr00130]
D PFREUD_05100 ubiE; Menaquinone biosynthesis methyltransferase ubiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D PFREUD_05130 dhbC; Menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D PFREUD_07520 menF; Isochorismate synthetase (enterochelin biosynthesis) K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D PFREUD_07490 menD; Menaquinone biosynthesis protein K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D PFREUD_07480 menC; O-succinylbenzoate-CoA synthase (4-(2'-carboxyphenyl)-4-oxybutyric acid synthase) K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D PFREUD_07530 menE2; O-succinylbenzoic acid-CoA ligase (2-succinylbenzoate--CoA ligase) K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D PFREUD_07540 menB; Naphthoate synthase (Dihydroxynaphthoic acid synthetase) K01661 menB; naphthoate synthase [EC:4.1.3.36]
D PFREUD_05080 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pfr00900]
D PFREUD_12560 dxs; Deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PFREUD_14720 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D PFREUD_18760 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D PFREUD_17460 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (4-(cytidine-5-diphospho)-2-C-methyl-D-erythritol kinase) K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D PFREUD_18750 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS) (MECDP-synthase) K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D PFREUD_14710 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D PFREUD_16970 ispH_(lytB); 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_15680 Farnesyltranstransferase / Geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PFREUD_17010 uppS; Undecaprenyl pyrophosphate synthase (di-trans,poly-cis-decaprenylcistransferase) K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D PFREUD_22360 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:pfr00523]
D PFREUD_00470 rmlA_(rfbA); Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PFREUD_00550 rmlB_(rfbB); DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PFREUD_00540 rmlC_(cps); dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D PFREUD_05130 dhbC; Menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D PFREUD_07520 menF; Isochorismate synthetase (enterochelin biosynthesis) K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D PFREUD_00550 rmlB_(rfbB); DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:pfr00946]
D PFREUD_02640 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:pfr00332]
D PFREUD_08490 proB; Glutamate 5-kinase (Gamma-glutamyl kinase) (GK) K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PFREUD_08510 proA; Gamma-glutamyl phosphate reductase (GPR) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:pfr00261]
D PFREUD_21650 cysN; Sulfate adenylyltransferase, large subunit/ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D PFREUD_21640 mmcV_cysD; Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) (Mitomycin biosynthesis protein V) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PFREUD_03880 ask; Aspartokinase (Aspartate kinase) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PFREUD_20100 asd; Aspartate-semialdehyde dehydrogenase (Semialdehyde dehydrogenase) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PFREUD_16160 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PFREUD_14560 dapB; Dihydrodipicolinate reductase (DHPR) K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pfr00521]
D PFREUD_10610 pgm1; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PFREUD_19880 inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D PFREUD_02800 impA; Inositol-1-monophosphatase (IMPase) (Inositol-1-phosphatase) (I-1-Pase) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PFREUD_19030 iolG1; iolG1 (Myo-inositol catabolism IolG1 protein) (myo-inositol 2-dehydrogenase) K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D PFREUD_00470 rmlA_(rfbA); Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PFREUD_00550 rmlB_(rfbB); DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PFREUD_00540 rmlC_(cps); dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:pfr00525]
D PFREUD_00470 rmlA_(rfbA); Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PFREUD_00550 rmlB_(rfbB); DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:pfr00401]
D PFREUD_11280 tyrA; Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PFREUD_11780 hisC; Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PFREUD_09460 tyrB; Aspartate transaminase (Aminotransferase) K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D PFREUD_11910 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D PFREUD_09440 pf3004; Carboxylic ester hydrolase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PFREUD_14870 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PFREUD_14880 Dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D PFREUD_09420 acpP; Acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:pfr00999]
D PFREUD_11410 metK; S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (MAT) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PFREUD_02640 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:pfr00362]
D PFREUD_07010 pcaC1; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D PFREUD_19900 pcaC2; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D PFREUD_00400 acyP; Putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:pfr00625]
D PFREUD_19300 aldB; Lactaldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pfr03020]
D PFREUD_05600 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase subunit beta) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PFREUD_05610 rpoC; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PFREUD_06070 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase subunit alpha) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PFREUD_11420 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pfr03010]
D PFREUD_15330 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PFREUD_14780 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PFREUD_05770 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PFREUD_06060 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PFREUD_05880 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PFREUD_23470 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PFREUD_05630 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PFREUD_05850 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PFREUD_06250 rspI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PFREUD_05700 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PFREUD_06050 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PFREUD_05620 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PFREUD_06040 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PFREUD_05840 rpsN1; 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14
D PFREUD_14580 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PFREUD_14370 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PFREUD_05800 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PFREUD_23450 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PFREUD_05750 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PFREUD_08680 rpsT; 30S Ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20
D PFREUD_05540 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PFREUD_05740 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PFREUD_05710 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PFREUD_05720 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PFREUD_05830 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PFREUD_05860 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PFREUD_05580 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PFREUD_23440 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PFREUD_05570 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PFREUD_05530 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PFREUD_06240 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PFREUD_05810 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PFREUD_05900 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PFREUD_05780 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PFREUD_06080 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PFREUD_05870 rplR; Ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PFREUD_14290 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PFREUD_14050 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PFREUD_08450 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PFREUD_05760 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PFREUD_05730 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PFREUD_05820 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PFREUD_17390 rplY; Ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PFREUD_08460 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PFREUD_14520 rpmB; Ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PFREUD_05790 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PFREUD_05890 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PFREUD_10350 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PFREUD_05450 rpmG; 50S ribosomal protein L33 RpmG K02913 RP-L33; large subunit ribosomal protein L33
D PFREUD_24220 Hypothetical protein K02914 RP-L34; large subunit ribosomal protein L34
D PFREUD_14060 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PFREUD_06030 Hypothetical protein K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pfr00970]
D PFREUD_08580 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PFREUD_23660 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PFREUD_17970 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PFREUD_10310 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PFREUD_18080 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PFREUD_01530 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PFREUD_07910 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PFREUD_12050 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PFREUD_04830 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PFREUD_12470 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PFREUD_13310 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PFREUD_17430 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PFREUD_04840 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PFREUD_13300 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PFREUD_12480 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PFREUD_03050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PFREUD_08200 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PFREUD_07880 tRNA-His K14226 tRNA-His; tRNA His
D PFREUD_00230 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PFREUD_04220 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_17280 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_15380 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_07780 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_14160 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_04900 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PFREUD_07820 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PFREUD_05440 tRNA-Met K14230 tRNA-Met; tRNA Met
D PFREUD_12150 tRNA-Met K14230 tRNA-Met; tRNA Met
D PFREUD_10020 tRNA-Met K14230 tRNA-Met; tRNA Met
D PFREUD_04820 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PFREUD_19380 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PFREUD_11060 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PFREUD_08190 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PFREUD_19700 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PFREUD_01520 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PFREUD_03740 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PFREUD_01480 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PFREUD_05430 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PFREUD_20490 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PFREUD_18500 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PFREUD_05500 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PFREUD_05400 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PFREUD_12490 tRNA-Val K14237 tRNA-Val; tRNA Val
D PFREUD_12450 tRNA-Val K14237 tRNA-Val; tRNA Val
D PFREUD_09560 tRNA-Val K14237 tRNA-Val; tRNA Val
D PFREUD_05680 gltX; Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_13550 gluQ; Glutamyl-Q tRNA(Asp) synthetase (Glu-Q-RSs), Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_10760 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PFREUD_10770 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PFREUD_10750 gatC; Glutamyl-tRNA(Gln) amidotransferase subunit C (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C) K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PFREUD_11940 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PFREUD_11560 alaS; Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PFREUD_11590 aspS; Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PFREUD_09190 glyQS; Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PFREUD_12440 thrS; Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PFREUD_01350 serS1; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PFREUD_18680 cysS2; Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PFREUD_06960 metG; Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PFREUD_11390 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PFREUD_08310 valS; Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PFREUD_08610 leuS; Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PFREUD_03860 ileS; Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PFREUD_02170 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PFREUD_03900 lysX; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PFREUD_02550 argS; Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PFREUD_14690 proS; Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PFREUD_11620 hisS; Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PFREUD_14020 pheS; Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PFREUD_14010 pheT; Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PFREUD_13930 tyrS; Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PFREUD_09750 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pfr03060]
D PFREUD_05970 secY; Preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D PFREUD_05510 secE; SecE/Sec61-gamma subunit of protein translocation complex K03073 secE; preprotein translocase subunit SecE
D PFREUD_15100 Hypothetical protein K03075 secG; preprotein translocase subunit SecG
D PFREUD_11680 secD; Protein-export membrane protein secD K03072 secD; preprotein translocase subunit SecD
D PFREUD_11670 secF; Protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D PFREUD_11690 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PFREUD_24190 oxaA; Conserved membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PFREUD_09690 Preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PFREUD_14390 ffh; GTP binding signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PFREUD_14400 ftsY; Signal recognition particle receptor K03110 ftsY; fused signal recognition particle receptor
D PFREUD_20030 arsA; arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D PFREUD_13520 Redox protein export K03116 tatA; sec-independent protein translocase protein TatA
D PFREUD_16150 tatB; Sec-independent protein translocase protein TatB precursor K03117 tatB; sec-independent protein translocase protein TatB
D PFREUD_13510 tatC; Sec-independent protein translocase protein TatC homolog K03118 tatC; sec-independent protein translocase protein TatC
D PFREUD_14280 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PFREUD_15410 LspA; Lipoprotein signal peptidase, signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pfr04122]
D PFREUD_23220 sseB; Thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PFREUD_10710 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PFREUD_21760 moaE2; Molybdopterin synthase MoaE, Molybdenum cofactor biosynthesis protein E 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PFREUD_21770 moeZ_(moeB); Molybdenum cofactor biosynthesis protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D PFREUD_16540 moe; UBA/THIF-type NAD/FAD binding protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D PFREUD_21800 moaC; Molybdenum cofactor biosynthesis protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PFREUD_16560 thiS; Thiamine biosynthesis protein K03154 thiS; sulfur carrier protein
C 03050 Proteasome [PATH:pfr03050]
D PFREUD_11290 prcA; 20S proteasome alpha-subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D PFREUD_11300 pcrB; 20S proteasome beta-subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:pfr03018]
D PFREUD_08440 Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PFREUD_17320 eno1; Enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_17250 eno2; Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_14570 pnpA; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (Guanosine pentaphosphate synthetase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PFREUD_10340 Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PFREUD_13110 Metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D PFREUD_14530 Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D PFREUD_04630 dnaK2; Chaperone protein dnaK 2 (Heat shock protein 70 2) (Heat shock 70 kDa protein 2) (HSP70 2) K04043 dnaK; molecular chaperone DnaK
D PFREUD_17840 dnaK1; Chaperone protein dnaK 1 (Heat shock protein 70 1) (Heat shock 70 kDa protein 1) (HSP70 1) K04043 dnaK; molecular chaperone DnaK
D PFREUD_06470 groL1_(groEL1); 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1) (Heat shock protein 60 1) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_18470 groL2_(groEL2)_(hsp60); 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2) (Heat shock protein 60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_19930 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PFREUD_24040 pcnB; tRNA nucleotidyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pfr03030]
D PFREUD_01710 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PFREUD_11830 dnaE1; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PFREUD_03820 Hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PFREUD_20530 dnaX; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PFREUD_08660 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PFREUD_00080 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PFREUD_20810 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PFREUD_12080 dnaG1; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PFREUD_07960 ssb2; Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein
D PFREUD_23460 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PFREUD_06930 rnhA; Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PFREUD_14270 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PFREUD_15360 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:pfr03410]
D PFREUD_19440 nth; Putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PFREUD_17090 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PFREUD_20170 mutY; MutY, A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PFREUD_17180 mpg; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PFREUD_07110 mutM2; Formamidopyrimidine-DNA glycosylase (DNA-formamidopyrimidine glycosylase) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PFREUD_01050 mutM1; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PFREUD_14440 mutM3; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PFREUD_23590 tagA; 3-Methyladenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D PFREUD_00870 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D PFREUD_05380 xthA; Exodeoxyribonuclease III/exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PFREUD_23010 nfo; endonuclease IV (deoxyribonuclease IV (phage-T4-induced)) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D PFREUD_15360 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:pfr03420]
D PFREUD_17350 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PFREUD_07500 uvrA1; Excinuclease ABC subunit A-like protein K03701 uvrA; excinuclease ABC subunit A
D PFREUD_15260 uvrA3; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A
D PFREUD_15300 uvrB; UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B
D PFREUD_15200 uvrC; UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C
D PFREUD_09880 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_06800 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_09820 urvD; UvrD/REP helicase / ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_15360 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:pfr03430]
D PFREUD_09880 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_06800 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_09820 urvD; UvrD/REP helicase / ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_16980 xseA; Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PFREUD_16990 xseB; Exodeoxyribonuclease 7 small subunit (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PFREUD_07960 ssb2; Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein
D PFREUD_23460 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PFREUD_11830 dnaE1; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PFREUD_00080 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PFREUD_03820 Hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PFREUD_08660 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PFREUD_20530 dnaX; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PFREUD_01710 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:pfr03440]
D PFREUD_07960 ssb2; Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein
D PFREUD_23460 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PFREUD_00090 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D PFREUD_08950 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
D PFREUD_03840 recR; Recombination protein recR K06187 recR; recombination protein RecR
D PFREUD_13130 recA; RecA (Recombinase A) K03553 recA; recombination protein RecA
D PFREUD_15360 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PFREUD_11710 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
D PFREUD_11700 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PFREUD_11720 ruvC; Crossover junction endodeoxyribonuclease (Holliday junction nuclease) (Holliday junction resolvase) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PFREUD_14510 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PFREUD_09850 recB; Exodeoxyribonuclease V beta chain RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PFREUD_09860 recC; Exodeoxyribonuclease V gamma subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PFREUD_09840 recD; Probable exodeoxyribonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PFREUD_11830 dnaE1; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PFREUD_00080 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PFREUD_03820 Hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PFREUD_08660 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PFREUD_20530 dnaX; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PFREUD_01710 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PFREUD_11400 priA; Primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:pfr03250]
D PFREUD_15770 ppiA_(cypB); Probable peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pfr02010]
D PFREUD_21610 Sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D PFREUD_21600 cysT; Sulphate transport system permease protein 2:Sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D PFREUD_21590 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D PFREUD_21580 cysA; Sulfate/thiosulfate import ATP-binding protein CysA (Sulfate-transporting ATPase) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D PFREUD_06450 Permease binding-protein component ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein
D PFREUD_16450 ABC transporter glycine betaine ? K05845 opuC; osmoprotectant transport system substrate-binding protein
D PFREUD_06420 opuCB; ABC transporter, permease protein OpuCB K05846 opuBD; osmoprotectant transport system permease protein
D PFREUD_06440 opuBB; permease membrane component ABC transporter OpuBB K05846 opuBD; osmoprotectant transport system permease protein
D PFREUD_23310 proW; ABC-type glycine betaine transport protein K05846 opuBD; osmoprotectant transport system permease protein
D PFREUD_23320 proZ; PROZ-like protein (ABC-type glycine betaine transport, permease protein) K05846 opuBD; osmoprotectant transport system permease protein
D PFREUD_06430 opuCA; Glycine betaine/carnitine/choline transport ATP-binding protein opuCA K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PFREUD_23300 proV; ABC-type glycine betaine transport, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PFREUD_18580 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PFREUD_06920 Hypothetical secreted protein K07335 bmpA; basic membrane protein A and related proteins
D PFREUD_06630 biaA; ABC transport system component K23508 ytfQ; galactofuranose transport system substrate-binding protein
D PFREUD_06670 Probable ABC transporter permease protein for sugars K23509 ytfT; galactofuranose transport system permease protein
D PFREUD_06660 Probable ABC transport system permease protein for sugars K23509 ytfT; galactofuranose transport system permease protein
D PFREUD_06640 ATP binding protein of ABC transporter, ATPase component K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D PFREUD_23420 Extracellular solute-binding protein precursor K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D PFREUD_23400 Binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D PFREUD_23410 Binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D PFREUD_19950 pstS; Phosphate-binding transport protein of ABC transporter system K02040 pstS; phosphate transport system substrate-binding protein
D PFREUD_19960 pstC; ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D PFREUD_19970 pstA; ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D PFREUD_19980 pstB; Phosphate import ATP-binding protein pstB (Phosphate-transporting ATPase) (ABC phosphate transporter) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PFREUD_13100 gluA; ATP-binding protein of ABC transporter for glutamate K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D PFREUD_10880 braC; Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Precursor] (LIVAT-BP) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PFREUD_10870 braD_(livH); High-affinity branched-chain amino acid transport system permease protein K01997 livH; branched-chain amino acid transport system permease protein
D PFREUD_10860 braE_(livM; High-affinity branched-chain amino acid transport system permease protein BraE (livM, LIV-I protein M) K01998 livM; branched-chain amino acid transport system permease protein
D PFREUD_10850 livG; Branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PFREUD_10840 livF; Branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PFREUD_03280 ABC-type transport systems, periplasmic component K02073 metQ; D-methionine transport system substrate-binding protein
D PFREUD_03300 ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein
D PFREUD_03290 metN; Methionine import ATP-binding protein metN K02071 metN; D-methionine transport system ATP-binding protein
D PFREUD_05930 bopA; solute binding protein of the ABC transport system K13889 gsiB; glutathione transport system substrate-binding protein
D PFREUD_05960 ABC transporter K13890 gsiC; glutathione transport system permease protein
D PFREUD_05950 oppC; ABC transporter, permease protein OppC K13891 gsiD; glutathione transport system permease protein
D PFREUD_05940 ABC transporter, ATPase subunit K13892 gsiA; glutathione transport system ATP-binding protein
D PFREUD_02590 ABC transporter, binding lipoprotein K25286 fagD; iron-siderophore transport system substrate-binding protein
D PFREUD_02580 ABC-type transporter, permease component K23186 fepD; iron-siderophore transport system permease protein
D PFREUD_02570 ABC transporter, permease component K23187 fepG; iron-siderophore transport system permease protein
D PFREUD_02560 fepC3; FepC K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D PFREUD_09180 ABC-transporter metal-binding lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D PFREUD_09160 Putative metal transport system ABC transporter permease K09816 znuB; zinc transport system permease protein
D PFREUD_09170 mntB; Manganese/zinc transport system ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D PFREUD_04580 cbiN; Cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D PFREUD_04590 cbiM; Cobalt transport protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D PFREUD_04570 cbiQ2; Cobalt transport protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D PFREUD_04560 cbiO1; Cobalt import ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D PFREUD_13720 BioY family protein. Membrane protein K03523 bioY; biotin transport system substrate-specific component
D PFREUD_13690 Cobalt permease K16783 bioN; biotin transport system permease protein
D PFREUD_13710 ABC-type transporter, ATPase component K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D PFREUD_06160 ABC transporter-associated permease K16785 ecfT; energy-coupling factor transport system permease protein
D PFREUD_20200 cbiQ1; ABC-type transporter, permease components (ABC-type cobalt transport system, permease component CbiQ) K16785 ecfT; energy-coupling factor transport system permease protein
D PFREUD_09600 ftsX; Cell division protein K09811 ftsX; cell division transport system permease protein
D PFREUD_09590 ftsE; ABC transporter, ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D PFREUD_02100 ABC-type transporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D PFREUD_02090 ABC transporter, transmembrane region K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D PFREUD_01740 cydCD; ABC transporter K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
C 02060 Phosphotransferase system (PTS) [PATH:pfr02060]
D PFREUD_19470 CE1826; PTS enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D PFREUD_19480 Phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D PFREUD_01380 ptsG_ptsM; PTS system mannose-specific EIIBCA component (EIIBCA-Man) (EII-Man/EIII-Man) K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D PFREUD_21490 Hypothetical protein K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D PFREUD_10820 PTS system, mannose/fructose/sorbose family, IIA component subfamily K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PFREUD_08000 pptE; phosphoenolpyruvate-protein phosphoryltransferase PptE K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
C 03070 Bacterial secretion system [PATH:pfr03070]
D PFREUD_11680 secD; Protein-export membrane protein secD K03072 secD; preprotein translocase subunit SecD
D PFREUD_11670 secF; Protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D PFREUD_05510 secE; SecE/Sec61-gamma subunit of protein translocation complex K03073 secE; preprotein translocase subunit SecE
D PFREUD_15100 Hypothetical protein K03075 secG; preprotein translocase subunit SecG
D PFREUD_05970 secY; Preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D PFREUD_11690 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PFREUD_24190 oxaA; Conserved membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PFREUD_09690 Preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PFREUD_14400 ftsY; Signal recognition particle receptor K03110 ftsY; fused signal recognition particle receptor
D PFREUD_14390 ffh; GTP binding signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PFREUD_13520 Redox protein export K03116 tatA; sec-independent protein translocase protein TatA
D PFREUD_16150 tatB; Sec-independent protein translocase protein TatB precursor K03117 tatB; sec-independent protein translocase protein TatB
D PFREUD_13510 tatC; Sec-independent protein translocase protein TatC homolog K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pfr02020]
D PFREUD_18790 senX; Sensor-like histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D PFREUD_18780 regX; Response regulator receiver K07776 regX3; two-component system, OmpR family, response regulator RegX3
D PFREUD_19950 pstS; Phosphate-binding transport protein of ABC transporter system K02040 pstS; phosphate transport system substrate-binding protein
D PFREUD_00810 Sensor protein, ATPase-like:Histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D PFREUD_00820 two-component response regulator K07669 mprA; two-component system, OmpR family, response regulator MprA
D PFREUD_17860 htrA1; Trypsin-like serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D PFREUD_09660 two-component system response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D PFREUD_00010 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D PFREUD_16110 citE; Citrate lyase beta chain (Citrase beta chain) (Citrate(Pro-3S)-lyase beta chain) K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D PFREUD_08630 PPA0888; NAD-dependent malic enzyme (NAD-ME) (Malate dehydrogenase) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D PFREUD_21730 narJ; Nitrate reductase delta subunit K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D PFREUD_17900 Two-component system sensor kinase. Membrane protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D PFREUD_02810 Major facilitator superfamily MFS_1 K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D PFREUD_20710 secretory protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PFREUD_22100 Type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PFREUD_20700 Hypothetical membrane protein K12510 tadB; tight adherence protein B
D PFREUD_22090 Hypothetical membrane protein K12510 tadB; tight adherence protein B
D PFREUD_22080 Hypothetical membrane protein K12511 tadC; tight adherence protein C
D PFREUD_20430 glnB; Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D PFREUD_15970 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_16030 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_01720 cydA; Cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PFREUD_01730 cydB; Cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PFREUD_00840 ptpA; Low molecular weight protein-tyrosine-phosphatase (protein-tyrosine-phosphatase) K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pfr02024]
D PFREUD_11050 luxS; S-ribosylhomocysteine lyase (Autoinducer-2 production protein luxS) (AI-2 synthesis protein) K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D PFREUD_11910 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PFREUD_00520 Rhamnosyltransferase, Glycosyl transferase family 2 K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D PFREUD_15720 aroH; Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PFREUD_23230 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PFREUD_23240 Glutamate/gamma-aminobutyrate anti-porter (membrane protein) K20265 gadC; glutamate:GABA antiporter
D PFREUD_03930 aminoacid permease K20265 gadC; glutamate:GABA antiporter
D PFREUD_10880 braC; Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Precursor] (LIVAT-BP) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PFREUD_10870 braD_(livH); High-affinity branched-chain amino acid transport system permease protein K01997 livH; branched-chain amino acid transport system permease protein
D PFREUD_10860 braE_(livM; High-affinity branched-chain amino acid transport system permease protein BraE (livM, LIV-I protein M) K01998 livM; branched-chain amino acid transport system permease protein
D PFREUD_10850 livG; Branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PFREUD_10840 livF; Branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PFREUD_08060 long-chain fatty-acid CoA ligase (AMP-binding enzyme) (long-chain-fatty-acid---CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_23000 PPA2234; Putative long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_21470 ribD; Riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase) (5-amino-6-(5-phosphoribosylamino)uracil reductase) K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PFREUD_10030 ABC transporter, substrate binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PFREUD_10040 ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PFREUD_10050 Permease protein of oligopeptide ABC transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PFREUD_10060 ATP-binding ABC transporter protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PFREUD_24190 oxaA; Conserved membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PFREUD_05510 secE; SecE/Sec61-gamma subunit of protein translocation complex K03073 secE; preprotein translocase subunit SecE
D PFREUD_15100 Hypothetical protein K03075 secG; preprotein translocase subunit SecG
D PFREUD_05970 secY; Preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D PFREUD_11690 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PFREUD_09690 Preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PFREUD_14400 ftsY; Signal recognition particle receptor K03110 ftsY; fused signal recognition particle receptor
D PFREUD_14390 ffh; GTP binding signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D PFREUD_12850 hrdB; RNA polymerase principal sigma factor HrdB K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D PFREUD_17320 eno1; Enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_17250 eno2; Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:pfr04980]
D PFREUD_10530 Cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PFREUD_07640 argK; Kinase ArgK K07588 MMAA; GTPase [EC:3.6.5.-]
D PFREUD_07650 mutB; Methylmalonyl-CoA mutase large subunit (Methylmalonyl-CoA mutase alpha subunit) (MCM-alpha) (MUTB-(R)-2-Methyl-3-oxopropanoyl-CoA CoA-carbonylmutase) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_07660 mutA; Methylmalonyl-CoA mutase small subunit (Methylmalonyl-CoA mutase beta subunit) (MCB-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PFREUD_11340 metH; methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:pfr01501]
D PFREUD_20040 secreted glycosyl hydrolase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PFREUD_15560 ftsI; Cell division protein FtsI (penicillin-binding protein 2) (Peptidoglycan glycosyltransferase) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:pfr01502]
D PFREUD_13250 ddlA; D-alanine--D-alanine ligase (D-alanylalanine synthetase) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PFREUD_01130 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PFREUD_15540 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PFREUD_15530 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase (UDP-MurNAc-pentapeptide phosphotransferase) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PFREUD_15500 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pfr01503]
D PFREUD_06540 amiC; AmiC, N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PFREUD_15770 ppiA_(cypB); Probable peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pfr01000]
C 01001 Protein kinases [BR:pfr01001]
D PFREUD_19610 pknB; Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PFREUD_15690 Hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PFREUD_19620 Hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PFREUD_21170 pkn; serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PFREUD_24070 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PFREUD_18790 senX; Sensor-like histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D PFREUD_00810 Sensor protein, ATPase-like:Histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D PFREUD_03260 Sensor protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PFREUD_17900 Two-component system sensor kinase. Membrane protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D PFREUD_10230 Sensory transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:pfr01009]
D PFREUD_09790 PP2Cc, Serine/threonine phosphatases K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D PFREUD_19580 pf456; Hypothetical protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:pfr01002]
D PFREUD_15410 LspA; Lipoprotein signal peptidase, signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D PFREUD_15810 Hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PFREUD_06380 pepC; Aminopeptidase C, Bleomycin hydrolase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D PFREUD_11360 pepC; Aminopeptidase C (Bleomycin hydrolase) K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D PFREUD_06680 guaA; GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase) (GMP synthetase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PFREUD_22250 guA; Glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PFREUD_04850 cell-wall peptidases, NlpC/P60 family secreted protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PFREUD_04280 Hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PFREUD_04770 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PFREUD_11860 gltB; Glutamate synthase large subunit (Ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PFREUD_06280 glmS; Glucosamine--fructose-6-phosphate aminotransferase (Hexosephosphate aminotransferase, D-fructose-6-phosphate amidotransferase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PFREUD_18980 asnB; Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PFREUD_19740 srt; Sortase family protein (fimbrial associated sortase-like protein) K07284 srtA; sortase A [EC:3.4.22.70]
D PFREUD_19210 srtA; Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D PFREUD_13320 Membrane protease K07052 K07052; CAAX protease family protein
D PFREUD_02850 Hypothetical protein K07052 K07052; CAAX protease family protein
D PFREUD_08100 pepN; Aminopeptidase N, Lysyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PFREUD_08030 dcp; Peptidyl-dipeptidase (Dipeptidyl carboxypeptidase) K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D PFREUD_05330 Metalloprotease (Peptidase family M13) K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D PFREUD_09970 Zn dependant peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D PFREUD_09980 Zn-dependant peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D PFREUD_01750 dapE1; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase related deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PFREUD_16240 dapE2; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PFREUD_05990 map; Methionine aminopeptidase (MAP) (Peptidase M) K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PFREUD_16060 map; Methionine aminopeptidase (MAP) (Peptidase M) K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PFREUD_16090 pepP; Xaa-Pro aminopeptidase I K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D PFREUD_14120 FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PFREUD_07920 Hypothetical membrane protein K24131 prsW; protease PrsW [EC:3.4.-.-]
D PFREUD_17860 htrA1; Trypsin-like serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D PFREUD_20360 dac; carboxypeptidase (serine-type D-Ala-D-Ala carboxypeptidase) (D-alanyl-D-alanine-carboxypeptidase) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PFREUD_08240 clpP1; ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp 1) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PFREUD_08250 clpP2; ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp 2) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PFREUD_09940 Secreted protease with a PDZ domain K07177 K07177; Lon-like protease
D PFREUD_13040 lexA; LexA repressor, Peptidase S24, SOS regulatory protein dinR K01356 lexA; repressor LexA [EC:3.4.21.88]
D PFREUD_21240 umuD; Prophage repressor precursor (Peptidase family S24) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PFREUD_14280 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PFREUD_08810 pip2; Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D PFREUD_11330 sppA; SppA, Periplasmic serine proteases K04773 sppA; protease IV [EC:3.4.21.-]
D PFREUD_07290 Peptidase S51 family protein, dipeptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21]
D PFREUD_11290 prcA; 20S proteasome alpha-subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D PFREUD_11300 pcrB; 20S proteasome beta-subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 01003 Glycosyltransferases [BR:pfr01003]
D PFREUD_10950 dpm; dolichyl-phosphate beta-D-mannosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D PFREUD_17510 dolichyl-phosphate-mannose-protein mannosyltransferase (Glycosyl transferase, family 39) K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D PFREUD_12400 pimA; Phosphatidylinositol alpha-mannosyltransferase (glycosyltransferase) K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D PFREUD_06090 gtfE; Glycosyltransferase K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D PFREUD_06310 sqdX_(rfaG); Glycosyltransferase K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D PFREUD_16190 glgA; glycosyltransferase (glycogen synthase) K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D PFREUD_10390 tagO; Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D PFREUD_13420 Hypothetical membrane protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D PFREUD_05360 Hypothetical membrane protein K14339 mptB; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D PFREUD_00530 Hypothetical transmembrane protein K14340 K14340; mannosyltransferase [EC:2.4.1.-]
D PFREUD_00430 Hypothetical transmembrane protein K14340 K14340; mannosyltransferase [EC:2.4.1.-]
D PFREUD_00630 gtfD; Glycosyl transferase, family 2 K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D PFREUD_00580 gtfA; Glycosyltransferase, family 2 K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
D PFREUD_12170 otsA; Trehalose-6-phosphate synthase (Alpha,alpha-trehalose-phosphate synthase) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pfr01005]
D PFREUD_00520 Rhamnosyltransferase, Glycosyl transferase family 2 K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D PFREUD_10390 tagO; Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pfr01011]
D PFREUD_10900 MurA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PFREUD_05480 murB; UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PFREUD_15490 murC; UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PFREUD_15520 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PFREUD_15550 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PFREUD_13250 ddlA; D-alanine--D-alanine ligase (D-alanylalanine synthetase) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PFREUD_01130 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PFREUD_07580 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PFREUD_15530 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase (UDP-MurNAc-pentapeptide phosphotransferase) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PFREUD_15500 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PFREUD_14200 uppP_(BacA); Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase) (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PFREUD_03890 mviN; Conserved membrane protein, MviN-like protein K03980 murJ; putative peptidoglycan lipid II flippase
D PFREUD_15560 ftsI; Cell division protein FtsI (penicillin-binding protein 2) (Peptidoglycan glycosyltransferase) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PFREUD_19600 pbpA; Penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D PFREUD_20360 dac; carboxypeptidase (serine-type D-Ala-D-Ala carboxypeptidase) (D-alanyl-D-alanine-carboxypeptidase) K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PFREUD_04850 cell-wall peptidases, NlpC/P60 family secreted protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PFREUD_04280 Hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PFREUD_19740 srt; Sortase family protein (fimbrial associated sortase-like protein) K07284 srtA; sortase A [EC:3.4.22.70]
D PFREUD_19210 srtA; Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D PFREUD_11540 Aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D PFREUD_06540 amiC; AmiC, N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:pfr01004]
D PFREUD_09440 pf3004; Carboxylic ester hydrolase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PFREUD_09430 fabH; 3-oxoacyl-(Acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PFREUD_09410 fabF_(fabB); 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PFREUD_14870 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PFREUD_14880 Dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PFREUD_12910 pf1637; Putative carboxylic ester hydrolase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D PFREUD_14860 inhA; Enoyl-[acyl-carrier-protein] reductase (NADH) K11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]
D PFREUD_08060 long-chain fatty-acid CoA ligase (AMP-binding enzyme) (long-chain-fatty-acid---CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_23000 PPA2234; Putative long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_00670 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PFREUD_15730 pls; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PFREUD_15740 plsC3; Acyltransferase PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pfr01006]
D PFREUD_15680 Farnesyltranstransferase / Geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PFREUD_17010 uppS; Undecaprenyl pyrophosphate synthase (di-trans,poly-cis-decaprenylcistransferase) K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D PFREUD_13080 miaA; TRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PFREUD_05080 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:pfr01007]
D PFREUD_05680 gltX; Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_13550 gluQ; Glutamyl-Q tRNA(Asp) synthetase (Glu-Q-RSs), Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_11940 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PFREUD_13930 tyrS; Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PFREUD_09750 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PFREUD_18680 cysS2; Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PFREUD_02550 argS; Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PFREUD_06960 metG; Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PFREUD_03860 ileS; Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PFREUD_08310 valS; Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PFREUD_08610 leuS; Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PFREUD_02170 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PFREUD_03900 lysX; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PFREUD_11590 aspS; Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PFREUD_11620 hisS; Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PFREUD_09190 glyQS; Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PFREUD_01350 serS1; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PFREUD_14690 proS; Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PFREUD_12440 thrS; Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PFREUD_11560 alaS; Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PFREUD_14020 pheS; Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PFREUD_14010 pheT; Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PFREUD_14000 got; Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PFREUD_09460 tyrB; Aspartate transaminase (Aminotransferase) K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PFREUD_11780 hisC; Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PFREUD_22880 malY; Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities (cystathionine beta-lyase, CBL) K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D PFREUD_13960 argD; Acetylornithine and succinylornithine aminotransferase (ACOAT) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PFREUD_09540 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PFREUD_21920 aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PFREUD_18880 hemL1; Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase)(GSA-AT) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PFREUD_19260 hemL2; glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase)(GSA-AT) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PFREUD_13350 ilvE_(bcaT); Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PFREUD_18160 serC; Phosphoserine aminotransferase (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:pfr00194]
D PFREUD_10500 atpC; ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PFREUD_10490 atpD; ATP synthase subunit beta (ATPase subunit beta) (ATP synthase F1 sector subunit beta) K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PFREUD_10480 atpG; ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PFREUD_10470 atpA; ATP synthase subunit alpha (ATPase subunit alpha) (ATP synthase F1 sector subunit alpha) K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PFREUD_10460 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PFREUD_10450 atpF; ATP synthase B chain (F0F1 ATP synthase subunit B) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PFREUD_10440 atpE; ATP synthase C chain (F1F0-ATPase subunit c) K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PFREUD_10430 atpB; ATP synthase A chain (ATPase protein 6) (F1F0-ATPase subunit a) K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PFREUD_10420 Hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pfr03000]
D PFREUD_02770 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PFREUD_18670 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PFREUD_15050 Transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PFREUD_10980 AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFREUD_04660 hspr2; Heat shock protein transcriptional repressor HspR2 (Hspr2 protein) K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D PFREUD_17810 hspR1; Heat shock protein transcriptional repressor HspR1 (Hspr1 protein) K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D PFREUD_09150 fur; Ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PFREUD_20010 arsR6; transcriptional regulator ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PFREUD_22200 arsR7; Transcriptional regulator ArsR K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D PFREUD_13160 Helix-turn-helix XRE-family like proteins. K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D PFREUD_18150 dtxR; Iron-dependent repressor K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D PFREUD_20940 sirR; Iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D PFREUD_07250 birA; BirA, Biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PFREUD_22690 Hypothetical protein K27097 espR; ESX-1-secreted protein regulator
D PFREUD_19410 whiB3; Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D PFREUD_07350 whiB1; Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D PFREUD_10240 whiB2; transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D PFREUD_20800 Hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D PFREUD_24140 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PFREUD_18770 carD; transcriptional regulator CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D PFREUD_16680 Transcriptional regulator (Glycerol uptake operon antiterminator regulatory protein) K02443 glpP; glycerol uptake operon antiterminator
D PFREUD_13950 argR; Arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D PFREUD_08750 hrcA; Heat-inducible transcription repressor hrcA K03705 hrcA; heat-inducible transcriptional repressor
D PFREUD_12090 tenA; Phosphomethylpyrimidine kinase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D PFREUD_12960 deoR2; DeoR transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D PFREUD_09650 Hypothetical protein K07735 algH; putative transcriptional regulator
D PFREUD_15420 dskA; Transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D PFREUD_13020 nrdR; Transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR
D PFREUD_15590 mraZ; Protein mraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:pfr03021]
D PFREUD_06070 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase subunit alpha) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PFREUD_05600 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase subunit beta) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PFREUD_05610 rpoC; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PFREUD_11420 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PFREUD_12850 hrdB; RNA polymerase principal sigma factor HrdB K03086 rpoD; RNA polymerase primary sigma factor
D PFREUD_12070 hrdD1; RNA polymerase principal sigma factor HrdD K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D PFREUD_10200 rpoE; RNA polymerase sigma-70 factor, sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PFREUD_14660 nusA; Transcription termination/antitermination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D PFREUD_11500 nusB; Transcription antitermination factor (N utilization substance protein B homolog) K03625 nusB; transcription antitermination protein NusB
D PFREUD_05520 nusG; Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D PFREUD_15420 dskA; Transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D PFREUD_17050 greA; Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D PFREUD_10340 Transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:pfr03019]
D PFREUD_08440 Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PFREUD_14460 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PFREUD_14530 Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D PFREUD_13110 Metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D PFREUD_07890 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PFREUD_17320 eno1; Enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_17250 eno2; Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_14570 pnpA; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (Guanosine pentaphosphate synthetase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PFREUD_10340 Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PFREUD_04630 dnaK2; Chaperone protein dnaK 2 (Heat shock protein 70 2) (Heat shock 70 kDa protein 2) (HSP70 2) K04043 dnaK; molecular chaperone DnaK
D PFREUD_17840 dnaK1; Chaperone protein dnaK 1 (Heat shock protein 70 1) (Heat shock 70 kDa protein 1) (HSP70 1) K04043 dnaK; molecular chaperone DnaK
D PFREUD_06470 groL1_(groEL1); 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1) (Heat shock protein 60 1) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_18470 groL2_(groEL2)_(hsp60); 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2) (Heat shock protein 60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_19930 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PFREUD_24040 pcnB; tRNA nucleotidyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D PFREUD_15190 ATPase K06958 rapZ; RNase adapter protein RapZ
D PFREUD_13460 Superfamily II RNA helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D PFREUD_12920 hrpA2; ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D PFREUD_04540 hrpA1; ATP-dependent helicase HrpA K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:pfr03011]
D PFREUD_15330 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PFREUD_14780 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PFREUD_05770 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PFREUD_06060 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PFREUD_05880 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PFREUD_23470 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PFREUD_05630 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PFREUD_05850 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PFREUD_06250 rspI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PFREUD_05700 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PFREUD_06050 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PFREUD_05620 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PFREUD_06040 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PFREUD_05840 rpsN1; 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14
D PFREUD_14580 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PFREUD_14370 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PFREUD_05800 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PFREUD_23450 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PFREUD_05750 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PFREUD_08680 rpsT; 30S Ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20
D PFREUD_05540 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PFREUD_05740 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PFREUD_05710 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PFREUD_05720 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PFREUD_05830 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PFREUD_05860 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PFREUD_23440 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PFREUD_05570 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PFREUD_05530 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PFREUD_05580 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PFREUD_06240 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PFREUD_05810 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PFREUD_05900 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PFREUD_05780 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PFREUD_06080 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PFREUD_05870 rplR; Ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PFREUD_14290 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PFREUD_14050 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PFREUD_08450 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PFREUD_05760 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PFREUD_05730 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PFREUD_05820 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PFREUD_08460 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PFREUD_14520 rpmB; Ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PFREUD_05790 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PFREUD_05890 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PFREUD_10350 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PFREUD_05450 rpmG; 50S ribosomal protein L33 RpmG K02913 RP-L33; large subunit ribosomal protein L33
D PFREUD_24220 Hypothetical protein K02914 RP-L34; large subunit ribosomal protein L34
D PFREUD_14060 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PFREUD_06030 Hypothetical protein K02919 RP-L36; large subunit ribosomal protein L36
D PFREUD_17390 rplY; Ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
C 03009 Ribosome biogenesis [BR:pfr03009]
D PFREUD_14460 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PFREUD_07890 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PFREUD_08870 era; GTP-binding protein K03595 era; GTPase
D PFREUD_08480 obg; GTPase K03979 obgE; GTPase [EC:3.6.5.-]
D PFREUD_15420 dskA; Transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D PFREUD_14660 nusA; Transcription termination/antitermination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D PFREUD_11500 nusB; Transcription antitermination factor (N utilization substance protein B homolog) K03625 nusB; transcription antitermination protein NusB
D PFREUD_05520 nusG; Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D PFREUD_17470 ksgA; Dimethyladenosine transferase (S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PFREUD_11380 Sun, tRNA and rRNA cytosine-C5-methylases K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PFREUD_06190 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PFREUD_03180 rsmC; rRNA (guanine-N2-)-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PFREUD_14490 Methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PFREUD_08770 Hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PFREUD_24170 gidB; Methyltransferase gidB (Glucose-inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PFREUD_15580 mraW; S-adenosyl-L-methionine-dependent methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PFREUD_17490 Methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PFREUD_14890 myrA; resistance protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PFREUD_18690 tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PFREUD_14730 Hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PFREUD_13580 rluB; Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PFREUD_15400 rluA; Pseudouridylate synthase, Uncharacterized RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PFREUD_06350 rimI; Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D PFREUD_17990 rimJ; ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D PFREUD_14350 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D PFREUD_13200 miaB2; 2-methylthioadenine synthetase MiaB protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D PFREUD_08440 Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PFREUD_11550 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D PFREUD_10170 engC; GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PFREUD_11260 engA; GTP binding protein K03977 engA; GTPase
D PFREUD_13060 FeoB, Ferrous iron transport protein B K03665 hflX; GTPase
D PFREUD_10380 Sua5/YciO/YrdC/YwlC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PFREUD_11650 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PFREUD_14630 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D PFREUD_14670 Hypothetical protein K09748 rimP; ribosome maturation factor RimP
D PFREUD_08540 Conserved protein, DUF143 domain K09710 ybeB; ribosome-associated protein
D PFREUD_08850 Hypothetical protein K07042 ybeY; probable rRNA maturation factor
D PFREUD_16930 ychF; GTPase YchF K06942 ychF; ribosome-binding ATPase
D PFREUD_14470 Hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:pfr03016]
D PFREUD_23600 Hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D PFREUD_05680 gltX; Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_13550 gluQ; Glutamyl-Q tRNA(Asp) synthetase (Glu-Q-RSs), Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_14690 proS; Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PFREUD_03860 ileS; Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PFREUD_08610 leuS; Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PFREUD_06960 metG; Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PFREUD_11940 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PFREUD_02550 argS; Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PFREUD_02170 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PFREUD_03900 lysX; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PFREUD_11590 aspS; Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PFREUD_11560 alaS; Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PFREUD_09190 glyQS; Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PFREUD_12440 thrS; Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PFREUD_01350 serS1; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PFREUD_18680 cysS2; Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PFREUD_08310 valS; Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PFREUD_11620 hisS; Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PFREUD_14020 pheS; Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PFREUD_14010 pheT; Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PFREUD_13930 tyrS; Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PFREUD_09750 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PFREUD_19860 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PFREUD_21820 hit; Histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PFREUD_11310 tRNA (adenine-N1-)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D PFREUD_06210 trmB; tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase) K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PFREUD_06200 truA; tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PFREUD_14620 truB; tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PFREUD_10380 Sua5/YciO/YrdC/YwlC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PFREUD_13080 miaA; TRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PFREUD_24210 rnpA; Ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5) K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PFREUD_07590 rph; Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PFREUD_12550 rnd; Ribonuclease D (3-5 exonuclease) K03684 rnd; ribonuclease D [EC:3.1.13.5]
D PFREUD_07970 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D PFREUD_11810 ybaK_EbsC; YbaC/EbsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D PFREUD_19710 mesJ; CMP/dCMP deaminase, zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D PFREUD_13090 miaB1; 2-methylthioadenine synthetase MiaB protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D PFREUD_14340 trmD; tRNA (guanine-N1-)-methyltransferase / S-adenosyl-L-methionine:tRNA (guanine-N1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PFREUD_14040 spoU1; rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
D PFREUD_10710 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PFREUD_19820 gcvT2; glycine cleavage T-protein, aminomethyl transferase K06980 ygfZ; tRNA-modifying protein YgfZ
D PFREUD_08790 Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PFREUD_20340 tilS; TRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PFREUD_06340 Peptidase, family M22 K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PFREUD_06360 gcp; Putative O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PFREUD_06330 Hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PFREUD_14570 pnpA; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (Guanosine pentaphosphate synthetase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:pfr03012]
D PFREUD_14640 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PFREUD_14070 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PFREUD_14770 tsf; Elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D PFREUD_05650 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D PFREUD_05640 fusA; Elongation factor G (EF-G) K02355 fusA; elongation factor G
D PFREUD_06230 GTP phosphohydrolase (mRNA-translation-assisting) K02355 fusA; elongation factor G
D PFREUD_10360 prfA; Peptide chain release factor 1 (RF-1) K02835 prfA; peptide chain release factor 1
D PFREUD_14750 frr; Ribosome recycling factor (Ribosome-releasing factor) (RRF) K02838 frr; ribosome recycling factor
D PFREUD_10370 hemK; Methylase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D PFREUD_17370 pth; Peptidyl-tRNA hydrolase (aminoacyl-tRNA hydrolase) K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D PFREUD_06020 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PFREUD_11510 efp; Elongation factor P K02356 efp; elongation factor P
D PFREUD_09580 prfB; Peptide chain release factor 2 (RF-2) K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:pfr03110]
D PFREUD_17920 clpB_2; Chaperone clpB 2 (ATP-dependent Clp protease B2) (Clp chaperone) K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PFREUD_19250 clpB_1; Chaperone clpB 1 (ATP-dependent Clp protease B1) (Clp chaperone) K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PFREUD_20250 clpC; chaperone clpC (Clp-family ATP-binding protease) (ATP-dependent Clp protease ATP-binding subunit) K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D PFREUD_08260 clpX; ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding subunit ClpX) K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PFREUD_04630 dnaK2; Chaperone protein dnaK 2 (Heat shock protein 70 2) (Heat shock 70 kDa protein 2) (HSP70 2) K04043 dnaK; molecular chaperone DnaK
D PFREUD_17840 dnaK1; Chaperone protein dnaK 1 (Heat shock protein 70 1) (Heat shock 70 kDa protein 1) (HSP70 1) K04043 dnaK; molecular chaperone DnaK
D PFREUD_06470 groL1_(groEL1); 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1) (Heat shock protein 60 1) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_18470 groL2_(groEL2)_(hsp60); 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2) (Heat shock protein 60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_08760 dnaJ3; Chaperone protein dnaJ 3 (DnaJ3 protein) (Heat shock protein 40 3) K03686 dnaJ; molecular chaperone DnaJ
D PFREUD_04650 dnaJ2; Chaperone protein dnaJ 2 (DnaJ2 protein) (Heat shock protein 40 2) K03686 dnaJ; molecular chaperone DnaJ
D PFREUD_17820 dnaJ1; Chaperone protein dnaJ 1 (DnaJ1 protein) (Heat shock protein 40 1) K03686 dnaJ; molecular chaperone DnaJ
D PFREUD_04640 grpE2; Protein GrpE 2 (HSP-70 cofactor 2) (Co-chaperone protein GrpE2) K03687 GRPE; molecular chaperone GrpE
D PFREUD_17830 grpE1; Protein GrpE 1 (HSP-70 cofactor 1) (Co-chaperone protein GrpE1) K03687 GRPE; molecular chaperone GrpE
D PFREUD_09500 hsp20_2; Heat shock protein 20 2 (20 kDa chaperone 2) K13993 HSP20; HSP20 family protein
D PFREUD_22780 hsp20_1; Heat shock protein 20 1 (20 kDa chaperone 1) K13993 HSP20; HSP20 family protein
D PFREUD_22790 hsp20_3; Heat shock protein 20 3 (20 kDa chaperone 3) K13993 HSP20; HSP20 family protein
D PFREUD_19460 hslR; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 hslR; ribosome-associated heat shock protein Hsp15
D PFREUD_06460 groS1(groES1)_(hsp10); 10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1) (Heat shock 10 1) K04078 groES; chaperonin GroES
D PFREUD_07810 groS2_(groES2)_(hsp10); 10 kDa chaperonin 2 (Protein Cpn10 2) (groES protein 2) (Heat shock protein 10 2) K04078 groES; chaperonin GroES
D PFREUD_14120 FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PFREUD_10430 atpB; ATP synthase A chain (ATPase protein 6) (F1F0-ATPase subunit a) K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PFREUD_20630 torD; Cytoplasmic chaperone TorD K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D PFREUD_15770 ppiA_(cypB); Probable peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PFREUD_18140 trxA4; thiredoxine K03671 TXN; thioredoxin
D PFREUD_24110 trxA1; Thioredoxin K03671 TXN; thioredoxin
D PFREUD_17940 trxA5; Thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D PFREUD_10600 trxA3; Thioredoxin K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:pfr04131]
D PFREUD_08360 ndk; Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PFREUD_20030 arsA; arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D PFREUD_23890 fba2; Fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PFREUD_15130 gap; Glyceraldehyde-3-phosphate dehydrogenase / erythrose 4 phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PFREUD_18810 gpm2; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_24080 gpm1; phosphoglycerate mutase/fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_15390 pyk1; Pyruvate kinase 1 K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system [BR:pfr04121]
C 03051 Proteasome [BR:pfr03051]
D PFREUD_11290 prcA; 20S proteasome alpha-subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D PFREUD_11300 pcrB; 20S proteasome beta-subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D PFREUD_13540 DeoR-family transcriptional regulator K13572 pafB; proteasome accessory factor B
D PFREUD_13530 Regulatory protein K13573 pafC; proteasome accessory factor C
C 03032 DNA replication proteins [BR:pfr03032]
D PFREUD_06930 rnhA; Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PFREUD_02770 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PFREUD_20320 ATPase K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D PFREUD_00010 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D PFREUD_20810 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PFREUD_12080 dnaG1; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PFREUD_07960 ssb2; Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein
D PFREUD_23460 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PFREUD_11830 dnaE1; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PFREUD_00080 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PFREUD_08660 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PFREUD_20530 dnaX; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PFREUD_01710 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PFREUD_03820 Hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PFREUD_14270 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PFREUD_15360 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PFREUD_00160 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PFREUD_12800 gyrA2; DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing)) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PFREUD_00150 gyrB2; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PFREUD_12820 gyrB1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PFREUD_20560 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:pfr03036]
D PFREUD_02770 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PFREUD_14460 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PFREUD_23890 fba2; Fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PFREUD_20260 Lsr2-like protein K26249 lsr2; nucleoid-associated protein Lsr2
D PFREUD_00010 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D PFREUD_02870 dps; Starvation-inducible DNA-binding protein K04047 dps; starvation-inducible DNA-binding protein
D PFREUD_10980 AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PFREUD_14420 smc; Chromosome partition protein Smc K03529 smc; chromosome segregation protein
D PFREUD_13600 scpA; Segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D PFREUD_13590 Transcriptional regulator K06024 scpB; segregation and condensation protein B
D PFREUD_09590 ftsE; ABC transporter, ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D PFREUD_15560 ftsI; Cell division protein FtsI (penicillin-binding protein 2) (Peptidoglycan glycosyltransferase) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PFREUD_13210 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D PFREUD_15480 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D PFREUD_15510 ftsW1; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D PFREUD_09600 ftsX; Cell division protein K09811 ftsX; cell division transport system permease protein
D PFREUD_15470 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PFREUD_06540 amiC; AmiC, N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PFREUD_15450 Hypothetical protein K09772 sepF; cell division inhibitor SepF
D PFREUD_13620 ATPase involved in cell division K03496 parA; chromosome partitioning protein
D PFREUD_24150 parA; Chromosome partitioning protein K03496 parA; chromosome partitioning protein
D PFREUD_24140 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PFREUD_24170 gidB; Methyltransferase gidB (Glucose-inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PFREUD_14800 xerC; Integrase/recombinase K03733 xerC; integrase/recombinase XerC
D PFREUD_13630 xerD; Site-specific recombinase K04763 xerD; integrase/recombinase XerD
D PFREUD_22650 int; Phage integrase:Phage integrase, N-terminal SAM-like K04763 xerD; integrase/recombinase XerD
D PFREUD_16140 PF47; Protein mrp homolog (ATP-binding protein) K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PFREUD_15170 Hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:pfr03400]
D PFREUD_17090 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PFREUD_17180 mpg; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PFREUD_20170 mutY; MutY, A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PFREUD_19440 nth; Putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PFREUD_06390 mutT; 8-dihydro-8-oxoguanine-triphosphatase (Mutator MutT protein/7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PFREUD_02720 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PFREUD_10620 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PFREUD_00870 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D PFREUD_23590 tagA; 3-Methyladenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D PFREUD_07110 mutM2; Formamidopyrimidine-DNA glycosylase (DNA-formamidopyrimidine glycosylase) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PFREUD_01050 mutM1; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PFREUD_14440 mutM3; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PFREUD_05380 xthA; Exodeoxyribonuclease III/exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PFREUD_23010 nfo; endonuclease IV (deoxyribonuclease IV (phage-T4-induced)) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PFREUD_15360 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PFREUD_07500 uvrA1; Excinuclease ABC subunit A-like protein K03701 uvrA; excinuclease ABC subunit A
D PFREUD_15260 uvrA3; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A
D PFREUD_15300 uvrB; UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B
D PFREUD_15200 uvrC; UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C
D PFREUD_09880 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_06800 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_09820 urvD; UvrD/REP helicase / ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PFREUD_05600 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase subunit beta) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PFREUD_05610 rpoC; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PFREUD_06070 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase subunit alpha) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PFREUD_11420 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PFREUD_17350 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PFREUD_16980 xseA; Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PFREUD_16990 xseB; Exodeoxyribonuclease 7 small subunit (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PFREUD_11830 dnaE1; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PFREUD_00080 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PFREUD_08660 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PFREUD_20530 dnaX; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PFREUD_01710 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PFREUD_03820 Hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PFREUD_07960 ssb2; Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein
D PFREUD_23460 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PFREUD_02730 naeIV; NaeI very short patch repair endonuclease (V.NaeI) K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D PFREUD_09850 recB; Exodeoxyribonuclease V beta chain RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PFREUD_09860 recC; Exodeoxyribonuclease V gamma subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PFREUD_09840 recD; Probable exodeoxyribonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PFREUD_13130 recA; RecA (Recombinase A) K03553 recA; recombination protein RecA
D PFREUD_11710 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
D PFREUD_11700 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PFREUD_11720 ruvC; Crossover junction endodeoxyribonuclease (Holliday junction nuclease) (Holliday junction resolvase) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PFREUD_11400 priA; Primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PFREUD_04360 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D PFREUD_04370 sbcD; SbcD, DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D PFREUD_20150 sms; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
D PFREUD_00090 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D PFREUD_14510 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PFREUD_08950 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
D PFREUD_03840 recR; Recombination protein recR K06187 recR; recombination protein RecR
D PFREUD_13660 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D PFREUD_03690 CRISPR-associated protein Cas1/Cas4 K15342 cas1; CRISP-associated protein Cas1
D PFREUD_00160 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PFREUD_12800 gyrA2; DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing)) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PFREUD_00150 gyrB2; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PFREUD_12820 gyrB1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PFREUD_20560 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PFREUD_07630 dinB; Nucleotidyltransferase/DNA polymerase involved in DNA repair (DNA polymerase IV) K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D PFREUD_15620 dinP; DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D PFREUD_21250 umuC_rumB; DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D PFREUD_21240 umuD; Prophage repressor precursor (Peptidase family S24) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PFREUD_13040 lexA; LexA repressor, Peptidase S24, SOS regulatory protein dinR K01356 lexA; repressor LexA [EC:3.4.21.88]
D PFREUD_15640 dnaE2; DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D PFREUD_13120 recX; Regulatory protein RecX K03565 recX; regulatory protein
D PFREUD_13050 dinG; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PFREUD_13150 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D PFREUD_19940 NUDIX hydrolase NTP pyrophosphohydrolases including oxidative damage repair enzymes K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D PFREUD_13640 nudF; ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D PFREUD_13010 nrdJ; Vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:pfr03029]
D PFREUD_14640 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PFREUD_14070 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PFREUD_14770 tsf; Elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D PFREUD_05650 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D PFREUD_05640 fusA; Elongation factor G (EF-G) K02355 fusA; elongation factor G
D PFREUD_06230 GTP phosphohydrolase (mRNA-translation-assisting) K02355 fusA; elongation factor G
D PFREUD_08870 era; GTP-binding protein K03595 era; GTPase
D PFREUD_13930 tyrS; Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PFREUD_08610 leuS; Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PFREUD_11590 aspS; Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PFREUD_09190 glyQS; Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PFREUD_02550 argS; Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PFREUD_10760 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PFREUD_10770 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PFREUD_10750 gatC; Glutamyl-tRNA(Gln) amidotransferase subunit C (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C) K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PFREUD_20320 ATPase K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D PFREUD_07960 ssb2; Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein
D PFREUD_23460 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PFREUD_04630 dnaK2; Chaperone protein dnaK 2 (Heat shock protein 70 2) (Heat shock 70 kDa protein 2) (HSP70 2) K04043 dnaK; molecular chaperone DnaK
D PFREUD_17840 dnaK1; Chaperone protein dnaK 1 (Heat shock protein 70 1) (Heat shock 70 kDa protein 1) (HSP70 1) K04043 dnaK; molecular chaperone DnaK
D PFREUD_04640 grpE2; Protein GrpE 2 (HSP-70 cofactor 2) (Co-chaperone protein GrpE2) K03687 GRPE; molecular chaperone GrpE
D PFREUD_17830 grpE1; Protein GrpE 1 (HSP-70 cofactor 1) (Co-chaperone protein GrpE1) K03687 GRPE; molecular chaperone GrpE
D PFREUD_06470 groL1_(groEL1); 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1) (Heat shock protein 60 1) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_18470 groL2_(groEL2)_(hsp60); 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2) (Heat shock protein 60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_06460 groS1(groES1)_(hsp10); 10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1) (Heat shock 10 1) K04078 groES; chaperonin GroES
D PFREUD_07810 groS2_(groES2)_(hsp10); 10 kDa chaperonin 2 (Protein Cpn10 2) (groES protein 2) (Heat shock protein 10 2) K04078 groES; chaperonin GroES
D PFREUD_08760 dnaJ3; Chaperone protein dnaJ 3 (DnaJ3 protein) (Heat shock protein 40 3) K03686 dnaJ; molecular chaperone DnaJ
D PFREUD_04650 dnaJ2; Chaperone protein dnaJ 2 (DnaJ2 protein) (Heat shock protein 40 2) K03686 dnaJ; molecular chaperone DnaJ
D PFREUD_17820 dnaJ1; Chaperone protein dnaJ 1 (DnaJ1 protein) (Heat shock protein 40 1) K03686 dnaJ; molecular chaperone DnaJ
D PFREUD_19640 nifU2; NifU-like protein K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
D PFREUD_16140 PF47; Protein mrp homolog (ATP-binding protein) K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PFREUD_24190 oxaA; Conserved membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pfr02000]
D PFREUD_02100 ABC-type transporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D PFREUD_02090 ABC transporter, transmembrane region K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D PFREUD_09490 Putative ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PFREUD_01740 cydCD; ABC transporter K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D PFREUD_00360 ABC-transporter K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial
D PFREUD_15960 ABC transporter K15738 uup; ABC transport system ATP-binding/permease protein
D PFREUD_21610 Sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D PFREUD_21600 cysT; Sulphate transport system permease protein 2:Sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D PFREUD_21590 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D PFREUD_21580 cysA; Sulfate/thiosulfate import ATP-binding protein CysA (Sulfate-transporting ATPase) K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D PFREUD_06450 Permease binding-protein component ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein
D PFREUD_16450 ABC transporter glycine betaine ? K05845 opuC; osmoprotectant transport system substrate-binding protein
D PFREUD_06420 opuCB; ABC transporter, permease protein OpuCB K05846 opuBD; osmoprotectant transport system permease protein
D PFREUD_06440 opuBB; permease membrane component ABC transporter OpuBB K05846 opuBD; osmoprotectant transport system permease protein
D PFREUD_23310 proW; ABC-type glycine betaine transport protein K05846 opuBD; osmoprotectant transport system permease protein
D PFREUD_23320 proZ; PROZ-like protein (ABC-type glycine betaine transport, permease protein) K05846 opuBD; osmoprotectant transport system permease protein
D PFREUD_06430 opuCA; Glycine betaine/carnitine/choline transport ATP-binding protein opuCA K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PFREUD_23300 proV; ABC-type glycine betaine transport, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PFREUD_11020 transporter K24985 ribY; putative riboflavin transport system substrate-binding protein
D PFREUD_11030 Binding-protein-dependent transport systems inner membrane component K24986 ribX; putative riboflavin transport system permease protein
D PFREUD_18580 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PFREUD_06630 biaA; ABC transport system component K23508 ytfQ; galactofuranose transport system substrate-binding protein
D PFREUD_06670 Probable ABC transporter permease protein for sugars K23509 ytfT; galactofuranose transport system permease protein
D PFREUD_06660 Probable ABC transport system permease protein for sugars K23509 ytfT; galactofuranose transport system permease protein
D PFREUD_06640 ATP binding protein of ABC transporter, ATPase component K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D PFREUD_23420 Extracellular solute-binding protein precursor K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D PFREUD_23400 Binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D PFREUD_23410 Binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D PFREUD_06920 Hypothetical secreted protein K07335 bmpA; basic membrane protein A and related proteins
D PFREUD_09290 ABC-type transport system, permease component K02069 STAR2; UDP-glucose/iron transport system permease protein
D PFREUD_24090 ABC transporter, substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PFREUD_12900 ABC transporter K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PFREUD_19950 pstS; Phosphate-binding transport protein of ABC transporter system K02040 pstS; phosphate transport system substrate-binding protein
D PFREUD_19960 pstC; ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D PFREUD_19970 pstA; ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D PFREUD_19980 pstB; Phosphate import ATP-binding protein pstB (Phosphate-transporting ATPase) (ABC phosphate transporter) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PFREUD_13100 gluA; ATP-binding protein of ABC transporter for glutamate K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D PFREUD_10880 braC; Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Precursor] (LIVAT-BP) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PFREUD_10870 braD_(livH); High-affinity branched-chain amino acid transport system permease protein K01997 livH; branched-chain amino acid transport system permease protein
D PFREUD_10860 braE_(livM; High-affinity branched-chain amino acid transport system permease protein BraE (livM, LIV-I protein M) K01998 livM; branched-chain amino acid transport system permease protein
D PFREUD_10850 livG; Branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PFREUD_10840 livF; Branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PFREUD_03280 ABC-type transport systems, periplasmic component K02073 metQ; D-methionine transport system substrate-binding protein
D PFREUD_03300 ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein
D PFREUD_03290 metN; Methionine import ATP-binding protein metN K02071 metN; D-methionine transport system ATP-binding protein
D PFREUD_11960 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D PFREUD_11970 ABC transporter permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D PFREUD_11980 ABC transporter (ATP-binding protein) K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D PFREUD_22930 polar amino acid ABC transporter, binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PFREUD_21870 polar amino acid ABC transporter, binding protein component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PFREUD_22940 polar amino acid ABC transporter, binding protein component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PFREUD_22950 polar amino acid ABC transporter, binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PFREUD_22920 polar amino acid ABC transporter, inner membrane component K02029 ABC.PA.P; polar amino acid transport system permease protein
D PFREUD_21890 polar amino acid ABC transporter, inner membrane protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D PFREUD_21880 Polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D PFREUD_22910 polar amino acid ABC transporter, ATP binding component K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D PFREUD_05930 bopA; solute binding protein of the ABC transport system K13889 gsiB; glutathione transport system substrate-binding protein
D PFREUD_05960 ABC transporter K13890 gsiC; glutathione transport system permease protein
D PFREUD_05950 oppC; ABC transporter, permease protein OppC K13891 gsiD; glutathione transport system permease protein
D PFREUD_05940 ABC transporter, ATPase subunit K13892 gsiA; glutathione transport system ATP-binding protein
D PFREUD_10030 ABC transporter, substrate binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PFREUD_10040 ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PFREUD_10050 Permease protein of oligopeptide ABC transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PFREUD_10060 ATP-binding ABC transporter protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PFREUD_02590 ABC transporter, binding lipoprotein K25286 fagD; iron-siderophore transport system substrate-binding protein
D PFREUD_02580 ABC-type transporter, permease component K23186 fepD; iron-siderophore transport system permease protein
D PFREUD_02570 ABC transporter, permease component K23187 fepG; iron-siderophore transport system permease protein
D PFREUD_02560 fepC3; FepC K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D PFREUD_06750 feuS; iron ABC transport system, solute-binding protein precursor K25282 yclQ; iron-siderophore transport system substrate-binding protein
D PFREUD_06770 feuC; ABC-type cobalamin/Fe3+-siderophores transport system, permease component K25283 yclO; iron-siderophore transport system permease protein
D PFREUD_06760 iron ABC transporter permease protein K25284 yclN; iron-siderophore transport system permease protein
D PFREUD_06780 ABC transporter K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D PFREUD_24020 fepC2; Iron transport system substrate-binding protein ABC transporter K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D PFREUD_24010 fepD; iron ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D PFREUD_14840 PPA1530; ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D PFREUD_24000 fepC1; ABC transporter, iron transport ATPase protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D PFREUD_09180 ABC-transporter metal-binding lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D PFREUD_09160 Putative metal transport system ABC transporter permease K09816 znuB; zinc transport system permease protein
D PFREUD_09170 mntB; Manganese/zinc transport system ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D PFREUD_04580 cbiN; Cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D PFREUD_04570 cbiQ2; Cobalt transport protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D PFREUD_04590 cbiM; Cobalt transport protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D PFREUD_04560 cbiO1; Cobalt import ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D PFREUD_13720 BioY family protein. Membrane protein K03523 bioY; biotin transport system substrate-specific component
D PFREUD_13690 Cobalt permease K16783 bioN; biotin transport system permease protein
D PFREUD_13710 ABC-type transporter, ATPase component K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D PFREUD_06140 pf2694; ABC-type transporter, permease components K16927 cbrT; energy-coupling factor transport system substrate-specific component
D PFREUD_06160 ABC transporter-associated permease K16785 ecfT; energy-coupling factor transport system permease protein
D PFREUD_20200 cbiQ1; ABC-type transporter, permease components (ABC-type cobalt transport system, permease component CbiQ) K16785 ecfT; energy-coupling factor transport system permease protein
D PFREUD_06150 cbiO2; ABC transporter, ATP-binding protein, cobalt K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D PFREUD_20190 cbiO3; ABC transporter, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D PFREUD_20180 ABC transporter K16925 ykoE; energy-coupling factor transport system permease protein
D PFREUD_21570 ABC transporter (Permease) K25140 drrB; daunorubicin/doxorubicin transport system permease protein
D PFREUD_21560 drrA; Daunorubicin resistance ATP-binding protein DrrA K25141 drrA; daunorubicin/doxorubicin transport system ATP-binding protein
D PFREUD_07200 tetronasin-transport integral membrane protein abc transporter K25149 narB; polyether ionophore transport system permease protein
D PFREUD_07210 ABC transporter, ATP-binding component K25150 narA; polyether ionophore transport system ATP-binding protein
D PFREUD_09600 ftsX; Cell division protein K09811 ftsX; cell division transport system permease protein
D PFREUD_09590 ftsE; ABC transporter, ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D PFREUD_01280 ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PFREUD_15240 ABC-type Na+ efflux pump permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D PFREUD_06130 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D PFREUD_04860 ABC transporter permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PFREUD_00590 tagG1; ABC-type polysaccharide export systems, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D PFREUD_05110 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PFREUD_15010 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PFREUD_15230 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PFREUD_01270 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PFREUD_06120 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PFREUD_00600 tagG2; ABC-type polysaccharide export systems K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PFREUD_00070 ABC transporter K02004 ABC.CD.P; putative ABC transport system permease protein
D PFREUD_01610 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D PFREUD_20470 Hypothetical membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D PFREUD_01620 ATP binding protein of ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PFREUD_20480 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PFREUD_00060 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PFREUD_14950 sufC; ABC-type transport system involved in Fe-S cluster assembly, ATPase component, SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D PFREUD_14830 Transporter, sodium/bile acid symporter family K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D PFREUD_03190 matE; Multi antimicrobial extrusion protein MatE K26937 dinF; MATE family, multidrug efflux pump
D PFREUD_19110 iolT3; iolT3 (myo-inositol transporter iolT3) K06609 iolT; MFS transporter, SP family, major inositol transporter
D PFREUD_22990 iolT1; iolT1 (Major myo-inositol transporter iolT1) K06609 iolT; MFS transporter, SP family, major inositol transporter
D PFREUD_00300 iolT2; iolT2 (myo-inositol transporter iolT2) K06609 iolT; MFS transporter, SP family, major inositol transporter
D PFREUD_00330 transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D PFREUD_12600 sugar transporter, major facilitator superfamily K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D PFREUD_17660 proP; Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PFREUD_22830 gudP; D-galactonate transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D PFREUD_16440 cynX; Cyanate MSF transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D PFREUD_02810 Major facilitator superfamily MFS_1 K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D PFREUD_02700 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D PFREUD_22240 Permease; multidrug resistance protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D PFREUD_20830 lmrB; Permease (Lincomycin resistance protein) K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D PFREUD_16780 Major facilitator family protein transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D PFREUD_23170 Membrane protein, Transporter, MFS superfamily K26602 yihN; MFS transporter, GlpU family, inner membrane protein
D PFREUD_02650 sugar transporter K08368 yaaU; MFS transporter, putative metabolite transport protein
D PFREUD_02460 yaaU; metabolite transport protein YaaU K08368 yaaU; MFS transporter, putative metabolite transport protein
D PFREUD_19470 CE1826; PTS enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D PFREUD_19480 Phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D PFREUD_08000 pptE; phosphoenolpyruvate-protein phosphoryltransferase PptE K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D PFREUD_01380 ptsG_ptsM; PTS system mannose-specific EIIBCA component (EIIBCA-Man) (EII-Man/EIII-Man) K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D PFREUD_21490 Hypothetical protein K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D PFREUD_10820 PTS system, mannose/fructose/sorbose family, IIA component subfamily K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PFREUD_14610 glpF; Glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D PFREUD_18520 TrkA, potassium transporter K10716 kch; voltage-gated potassium channel
D PFREUD_20420 Ammonium transporter K03320 amt; ammonium transporter, Amt family
D PFREUD_09360 chlD; ChlD, Mg-chelatase subunit ChlD K07114 yfbK; Ca-activated chloride channel homolog
D PFREUD_09370 Von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D PFREUD_20980 Von Willebrand factor, type A precursor K07114 yfbK; Ca-activated chloride channel homolog
D PFREUD_18050 mscL; Large conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D PFREUD_24030 mscs; MscS transporter, small conductance mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D PFREUD_17580 Hypothetical membrane protein K06199 crcB; fluoride exporter
D PFREUD_17590 Hypothetical protein K06199 crcB; fluoride exporter
D PFREUD_01660 Hypothetical membrane protein K24915 TMEM175; TMEM175 potassium channel family protein
D PFREUD_20110 Hypothetical membrane protein K24915 TMEM175; TMEM175 potassium channel family protein
D PFREUD_06900 Hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PFREUD_08860 Hypothetical secreted protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PFREUD_09000 pduA; Propanediol utilization protein PduA K27260 pduA; bacterial microcompartment shell protein
D PFREUD_00380 cycA2; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D PFREUD_20460 cycA1; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D PFREUD_18700 amino acid permease K11738 ansP; L-asparagine permease
D PFREUD_18720 Amino acid permease. membrane protein K11738 ansP; L-asparagine permease
D PFREUD_09510 Amino acid permease. Membran protein K14052 puuP; putrescine importer
D PFREUD_23240 Glutamate/gamma-aminobutyrate anti-porter (membrane protein) K20265 gadC; glutamate:GABA antiporter
D PFREUD_03930 aminoacid permease K20265 gadC; glutamate:GABA antiporter
D PFREUD_03410 Cation-efflux transport protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D PFREUD_08180 sugE; Small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D PFREUD_11200 Permeases of the drug/metabolite transporter (DMT) superfamily K11939 rhtA; inner membrane transporter RhtA
D PFREUD_04610 gnuT; Gluconate permease (transmembrane) K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D PFREUD_22850 gntP; Gluconate transporter (transmembrane) K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D PFREUD_03570 PPA1043; Anaerobic C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D PFREUD_16340 dcuA; C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D PFREUD_18660 lldP; L-lactate permease K03303 lutP; lactate permease
D PFREUD_08390 chaA; ionic transporter integral membrane protein K07300 chaA; Ca2+:H+ antiporter
D PFREUD_20740 NhaA; sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D PFREUD_04440 nfa14140; Putative monovalent cation/proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D PFREUD_19680 Na+/H+ antiporter K11105 cvrA; potassium/hydrogen antiporter
D PFREUD_12700 TrkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D PFREUD_12710 trkA_(ceoC); Trk system potassium uptake protein TrkA (K(+)-uptake protein TrkA) K03499 trkA; trk/ktr system potassium uptake protein
D PFREUD_23760 Xanthine/uracil permease K24206 uacT; uric acid transporter
D PFREUD_18180 permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D PFREUD_16220 Chloride channel K03281 clcA; chloride channel protein, CIC family
D PFREUD_23840 Chloride channel protein K03281 clcA; chloride channel protein, CIC family
D PFREUD_20950 mntH; Mn2+ and Fe2+ transporter K03322 mntH; manganese transport protein
D PFREUD_20030 arsA; arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D PFREUD_16610 Arsenite efflux pump ACR3 and related permeases (Arsenite efflux pump ACR3 or related permease) K03325 ACR3; arsenite transporter
D PFREUD_03890 mviN; Conserved membrane protein, MviN-like protein K03980 murJ; putative peptidoglycan lipid II flippase
D PFREUD_12940 permease K13936 mdcF; malonate transporter and related proteins
D PFREUD_22800 kup; Potassium transport system protein K03549 kup; KUP system potassium uptake protein
D PFREUD_19000 lysE; Lysine exporter protein, membran protein K06895 lysE; L-lysine exporter family protein LysE/ArgO
D PFREUD_06890 azlC; AzlC family protein precursor (amino acid permease) K26605 azlC; branched chain amino acid efflux pump
D PFREUD_06880 Hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D PFREUD_19320 Hypothetical membrane protein K09125 yhhQ; queuosine precursor transporter
D PFREUD_21680 Hypothetical membrane protein K22736 VIT; vacuolar iron transporter family protein
D PFREUD_15510 ftsW1; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D PFREUD_20610 dmsA; Anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D PFREUD_20600 dmsB; Anaerobic dimethyl sulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D PFREUD_19660 feoA; Ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D PFREUD_19650 feoB; Ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D PFREUD_02670 MgtC, Mg2+ transporter protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:pfr02044]
D PFREUD_15810 Hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PFREUD_20710 secretory protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PFREUD_22100 Type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PFREUD_20700 Hypothetical membrane protein K12510 tadB; tight adherence protein B
D PFREUD_22090 Hypothetical membrane protein K12510 tadB; tight adherence protein B
D PFREUD_22080 Hypothetical membrane protein K12511 tadC; tight adherence protein C
D PFREUD_15440 Hypothetical protein K02221 yggT; YggT family protein
D PFREUD_08640 Hypothetical protein K02237 comEA; competence protein ComEA
D PFREUD_05030 Deoxycytidylate deaminase (dCMP deaminase) K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D PFREUD_08650 comEC; ComE operon protein 3 K02238 comEC; competence protein ComEC
D PFREUD_09690 Preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PFREUD_11680 secD; Protein-export membrane protein secD K03072 secD; preprotein translocase subunit SecD
D PFREUD_05510 secE; SecE/Sec61-gamma subunit of protein translocation complex K03073 secE; preprotein translocase subunit SecE
D PFREUD_11670 secF; Protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D PFREUD_15100 Hypothetical protein K03075 secG; preprotein translocase subunit SecG
D PFREUD_05970 secY; Preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D PFREUD_14390 ffh; GTP binding signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PFREUD_14400 ftsY; Signal recognition particle receptor K03110 ftsY; fused signal recognition particle receptor
D PFREUD_11690 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PFREUD_24190 oxaA; Conserved membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PFREUD_13520 Redox protein export K03116 tatA; sec-independent protein translocase protein TatA
D PFREUD_16150 tatB; Sec-independent protein translocase protein TatB precursor K03117 tatB; sec-independent protein translocase protein TatB
D PFREUD_13510 tatC; Sec-independent protein translocase protein TatC homolog K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:pfr02042]
D PFREUD_06900 Hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PFREUD_08860 Hypothetical secreted protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PFREUD_17000 Hypothetical membrane protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:pfr02022]
D PFREUD_18790 senX; Sensor-like histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D PFREUD_18780 regX; Response regulator receiver K07776 regX3; two-component system, OmpR family, response regulator RegX3
D PFREUD_00810 Sensor protein, ATPase-like:Histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D PFREUD_00820 two-component response regulator K07669 mprA; two-component system, OmpR family, response regulator MprA
D PFREUD_09660 two-component system response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D PFREUD_03260 Sensor protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PFREUD_03270 two component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D PFREUD_17900 Two-component system sensor kinase. Membrane protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D PFREUD_10230 Sensory transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D PFREUD_15370 two-component system response regulator K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:pfr02035]
D PFREUD_15810 Hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PFREUD_20710 secretory protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PFREUD_22100 Type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pfr04812]
D PFREUD_00190 Hypothetical protein K06990 MEMO1; MEMO1 family protein
D PFREUD_15470 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PFREUD_13620 ATPase involved in cell division K03496 parA; chromosome partitioning protein
D PFREUD_24150 parA; Chromosome partitioning protein K03496 parA; chromosome partitioning protein
D PFREUD_24140 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:pfr04147]
D PFREUD_23890 fba2; Fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PFREUD_17320 eno1; Enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_17250 eno2; Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PFREUD_15130 gap; Glyceraldehyde-3-phosphate dehydrogenase / erythrose 4 phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PFREUD_15120 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PFREUD_15390 pyk1; Pyruvate kinase 1 K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PFREUD_15770 ppiA_(cypB); Probable peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PFREUD_06470 groL1_(groEL1); 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1) (Heat shock protein 60 1) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_18470 groL2_(groEL2)_(hsp60); 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2) (Heat shock protein 60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PFREUD_04630 dnaK2; Chaperone protein dnaK 2 (Heat shock protein 70 2) (Heat shock 70 kDa protein 2) (HSP70 2) K04043 dnaK; molecular chaperone DnaK
D PFREUD_17840 dnaK1; Chaperone protein dnaK 1 (Heat shock protein 70 1) (Heat shock 70 kDa protein 1) (HSP70 1) K04043 dnaK; molecular chaperone DnaK
D PFREUD_04290 pgi; Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PFREUD_06480 guaB1; Inosine-5-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) / GMP reductase) K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PFREUD_06490 guaB2; Inosine-5-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) / GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PFREUD_05650 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D PFREUD_21820 hit; Histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PFREUD_12840 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_11570 ldh1; L-Lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PFREUD_14830 Transporter, sodium/bile acid symporter family K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D PFREUD_08060 long-chain fatty-acid CoA ligase (AMP-binding enzyme) (long-chain-fatty-acid---CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_23000 PPA2234; Putative long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PFREUD_02820 mmgA; acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PFREUD_05980 adk; Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D PFREUD_11660 apt; Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase) K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PFREUD_13940 argH; Argininosuccinate lyase (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PFREUD_01460 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PFREUD_17560 galK1; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PFREUD_19630 galK2; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PFREUD_10630 glgB; 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PFREUD_14600 glpK; Glycerol kinase (ATP:glycerol 3-phosphotransferase) (Glycerokinase) (GK) K00864 glpK; glycerol kinase [EC:2.7.1.30]
D PFREUD_15970 Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_16030 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PFREUD_18910 hemB; Delta-aminolevulinic acid dehydratase (Porphobilinogen synthase) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PFREUD_10080 D-3-phosphoglycerate dehydrogenase / erythronate 4-phosphate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PFREUD_21910 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PFREUD_06830 purH; Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PFREUD_10890 lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PFREUD_02490 fixB_(ydiR); Electron transfer flavoprotein, carnitine metabolism (FixB protein) K03522 fixB; electron transfer flavoprotein alpha subunit
D PFREUD_15060 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PFREUD_15110 tpi1; triosephosphate isomerase 1 K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PFREUD_18810 gpm2; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PFREUD_24080 gpm1; phosphoglycerate mutase/fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:pfr02048]
D PFREUD_03690 CRISPR-associated protein Cas1/Cas4 K15342 cas1; CRISP-associated protein Cas1
D PFREUD_03680 Hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D PFREUD_03710 CRISPR-associated HD domain protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D PFREUD_03730 Hypothetical protein K19131 csb1; CRISPR-associated protein Csb1
D PFREUD_03720 Hypothetical protein K19132 csb2; CRISPR-associated protein Csb2
D PFREUD_03700 Hypothetical protein K19133 csb3; CRISPR-associated protein Csb3
D PFREUD_01260 hsdM1; Type I restriction-modification system DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D PFREUD_02770 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PFREUD_21400 Putative type III restriction enzyme K01156 res; type III restriction enzyme [EC:3.1.21.5]
D PFREUD_21390 modB; DNA methylase (site-specific DNA-methyltransferase adenine-specific, Putative type III restriction-modification system) K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D PFREUD_03200 mrr; restriction system protein K07448 mrr; restriction system protein
D PFREUD_15470 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PFREUD_05680 gltX; Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_13550 gluQ; Glutamyl-Q tRNA(Asp) synthetase (Glu-Q-RSs), Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PFREUD_02740 Hypothetical protein K19175 dptH; DNA phosphorothioation-dependent restriction protein DptH
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:pfr04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:pfr01504]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pfr03100]
D PFREUD_08580 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PFREUD_23660 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PFREUD_17970 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PFREUD_10310 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PFREUD_18080 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PFREUD_01530 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PFREUD_07910 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PFREUD_12050 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PFREUD_04830 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PFREUD_12470 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PFREUD_13310 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PFREUD_17430 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PFREUD_04840 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PFREUD_13300 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PFREUD_12480 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PFREUD_03050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PFREUD_08200 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PFREUD_07880 tRNA-His K14226 tRNA-His; tRNA His
D PFREUD_00230 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PFREUD_04220 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_17280 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_15380 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_07780 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_14160 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PFREUD_04900 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PFREUD_07820 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PFREUD_05440 tRNA-Met K14230 tRNA-Met; tRNA Met
D PFREUD_12150 tRNA-Met K14230 tRNA-Met; tRNA Met
D PFREUD_10020 tRNA-Met K14230 tRNA-Met; tRNA Met
D PFREUD_04820 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PFREUD_19380 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PFREUD_11060 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PFREUD_08190 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PFREUD_19700 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PFREUD_01520 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PFREUD_03740 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PFREUD_01480 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PFREUD_05430 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PFREUD_20490 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PFREUD_18500 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PFREUD_05500 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PFREUD_05400 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PFREUD_12490 tRNA-Val K14237 tRNA-Val; tRNA Val
D PFREUD_12450 tRNA-Val K14237 tRNA-Val; tRNA Val
D PFREUD_09560 tRNA-Val K14237 tRNA-Val; tRNA Val
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PFREUD_16000 Dehydrogenase K16652 dprE2; decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase [EC:1.1.1.333]
D PFREUD_01600 dkgA; 2,5-diketo-D-gluconate reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D PFREUD_03160 PF2369; Putative aldo/keto reductase (oxidoreductase) K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D PFREUD_23920 yghZ; Oxidoreductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D PFREUD_00750 aslB; Arylsulfatase regulator K24118 atsB; serine-type anaerobic sulfatase-maturating enzyme [EC:1.1.98.7]
D PFREUD_02420 caiA; Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase) K08297 caiA; crotonobetainyl-CoA dehydrogenase [EC:1.3.8.13]
D PFREUD_05140 electron transfer oxidoreductase K21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38]
D PFREUD_02500 fixC_(ydiS); Electron transfer flavoprotein-quinone oxidoreductase (FixC protein) K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-]
D PFREUD_20050 Pyridine nucleotide-disulphide oxidoreductase K17883 mtr; mycothione reductase [EC:1.8.1.15]
D PFREUD_05420 ahpF; Alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D PFREUD_17100 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D PFREUD_12520 msrB; L-methionine (S)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D PFREUD_12610 Gst; glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D PFREUD_07790 bcp; Bcp Putative peroxiredoxin (Thioredoxin reductase) K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PFREUD_01430 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PFREUD_05410 ahpC; Peroxiredoxin/Alkyl hydroperoxide reductase subunit C/Thioredoxin peroxidase/Alkyl hydroperoxide reductase protein C22/General stress protein 22 K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D PFREUD_23810 Peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D PFREUD_19990 arsC; Arsenate reductase (glutaredoxin) K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D PFREUD_00210 pflA; PflA, Pyruvate-formate lyase-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D PFREUD_23090 Dehydrogenase K14189 dltE; uncharacterized oxidoreductase [EC:1.-.-.-]
D PFREUD_19920 GCN5-related N-acetyltransferase K15520 mshD; mycothiol synthase [EC:2.3.1.189]
D PFREUD_10970 Hypothetical protein K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D PFREUD_22210 Acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D PFREUD_16370 Acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D PFREUD_00990 aatA; Leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D PFREUD_01060 aatB; Leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D PFREUD_22290 Glycosyl transferase, group 1 K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D PFREUD_11870 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D PFREUD_09120 pduO; Propanediol utilization protein PduO K27270 pduO; corrinoid adenosyltransferase [EC:2.5.1.-]
D PFREUD_22470 dhaK_dhaL; Dihydroxyacetone kinase K20901 lerK; L-erythrulose 1-kinase [EC:2.7.1.209]
D PFREUD_03210 Hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D PFREUD_16010 glnE; Glutamate-ammonia-ligase adenylyltransferase ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D PFREUD_20160 disA; DNA integrity scanning protein disA K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D PFREUD_02430 caiB; Crotonobetainyl-CoA:carnitine CoA-transferase K08298 caiB; L-carnitine CoA-transferase [EC:2.8.3.21]
D PFREUD_01210 Appr-1-p processing, ADP-ribose-1-monophosphate) processing activity K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D PFREUD_18540 Hypothetical protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D PFREUD_08070 pf2652; Hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PFREUD_07850 Protein-tyrosine phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D PFREUD_12180 pgm; phosphoglycerate mutase K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D PFREUD_08550 gmpB; phosphoglycerate mutase K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D PFREUD_11950 pgm2; Phosphoglycerate mutase (D-phosphoglycerate 2,3-phosphomutase) K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D PFREUD_09740 PPA1328; Predicted metal-dependent phosphoesterase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D PFREUD_20390 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D PFREUD_17480 tatD; DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PFREUD_10560 Nuclease of the RecB family K07503 nucS; endonuclease [EC:3.1.-.-]
D PFREUD_14810 def; Polypeptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PFREUD_22280 LmbE-like protein K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]
D PFREUD_17040 LMBE-related protein K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]
D PFREUD_17200 NUDIX hydrolase K12944 nudI; nucleoside triphosphatase [EC:3.6.1.-]
D PFREUD_09340 moxR; ATPases MoxR family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PFREUD_06300 Carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D PFREUD_01690 fkbP; FK506-binding protein (peptidyl-prolyl cis-trans isomerase) K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D PFREUD_22460 tpi2; Triosephosphate isomerase 2 (EC 5.3.1.1) K21910 eryH; L-erythrulose 1-phosphate isomerase [EC:5.3.1.33]
D PFREUD_02440 caiC; Crotonobetaine/carnitine-CoA ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48]
D PFREUD_14130 cysS1; Cysteine--tRNA ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]
D PFREUD_22190 cadA; ATPase, E1-E2 type:Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D PFREUD_23130 iolH; IolH (Myo-inositol catabolism IolH protein) (isomerase:epimerase) K06605 iolH; myo-inositol catabolism protein IolH
D PFREUD_10830 transcriptional regulator K04767 acuB; acetoin utilization protein AcuB
D PFREUD_18650 Oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE
D PFREUD_18640 iron-sulfur protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D PFREUD_18630 Hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
D PFREUD_09050 pduG; Propanediol utilization diol dehydratase reactivation protein PduG K27264 pduG; propanediol dehydratase-reactivating factor large subunit
D PFREUD_09060 DhaG; Glycerol dehydratase reactivation factor DhaG K27265 pduH; propanediol dehydratase-reactivating factor small subunit
C 99982 Energy metabolism
D PFREUD_14930 nifU1; Nitrogen-fixing NifU-like K04488 iscU; nitrogen fixation protein NifU and related proteins
D PFREUD_02480 fixA_(ydiQ); Electron transfer flavoprotein (FixA protein) K03521 fixA; electron transfer flavoprotein beta subunit
D PFREUD_02510 fixX; Ferredoxin-like protein fixX K03855 fixX; ferredoxin like protein
D PFREUD_02330 merA; Pyridine nucleotide-disulphide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
D PFREUD_21320 merA; Pyridine nucleotide-disulphide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D PFREUD_09090 eutJ; Ethanolamine utilization protein EutJ K04024 eutJ; ethanolamine utilization protein EutJ
D PFREUD_08980 pduV; Propanediol utilization protein PduV K04029 eutP; ethanolamine utilization protein EutP
D PFREUD_08990 pdU; Propanediol utilization protein PduU K04031 eutS; ethanolamine utilization protein EutS
D PFREUD_09380 alanine racemase K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D PFREUD_01080 secreted transglycosydase K21687 rpfA; resuscitation-promoting factor RpfA
D PFREUD_06100 Resuscitation-promoting factor RpfB K21688 rpfB; resuscitation-promoting factor RpfB
C 99987 Cofactor metabolism
D PFREUD_23820 ABC1 family protein K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
D PFREUD_17060 Hypothetical membrane protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D PFREUD_09800 cspA; Cold shock-like protein CspA K03704 cspA; cold shock protein
D PFREUD_18210 cspB; Cold shock protein K03704 cspA; cold shock protein
C 99974 Translation
D PFREUD_01390 exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D PFREUD_07560 clpS; ATP-dependent Clp protease adaptor protein clpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D PFREUD_08210 tig; Trigger factor (TF) K03545 tig; trigger factor
D PFREUD_09630 smpB; SmpB SsrA-binding protein K03664 smpB; SsrA-binding protein
D PFREUD_14240 chlI; Magnesium chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D PFREUD_16950 rmuC; DNA recombination protein K09760 rmuC; DNA recombination protein RmuC
D PFREUD_14250 Putative endonuclease K07460 yraN; putative endonuclease
D PFREUD_14230 dprA; DNA processing / uptake protein K04096 smf; DNA processing protein
D PFREUD_11580 Uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase K07478 ycaJ; putative ATPase
D PFREUD_24830 int; Integrase, catalytic region K07482 K07482; transposase, IS30 family
D PFREUD_24440 int; Integrase, catalytic region K07482 K07482; transposase, IS30 family
D PFREUD_24980 int; Integrase, catalytic region K07482 K07482; transposase, IS30 family
D PFREUD_22560 int; Integrase, catalytic region K07482 K07482; transposase, IS30 family
D PFREUD_24660 TnpD; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24420 tnpC; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24280 tnpC; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24350 tnpC; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24780 tnpC; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_25000 tnpC; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24400 TnpD; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24470 tnp; transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24330 TnpD; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24720 TnpD; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24850 tnpD; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24890 TnpD; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24940 TnpD; Transposase IS3/IS911 K07483 K07483; transposase
D PFREUD_24530 tnpA; Transposase K07485 K07485; transposase
D PFREUD_24880 tnpA; Transposase (troncated ?) K07485 K07485; transposase
D PFREUD_24730 tnpA; Transposase (troncated ?) K07485 K07485; transposase
D PFREUD_25140 tnpA; Transposase (troncated ?) K07485 K07485; transposase
D PFREUD_24650 tnpB; Transposase K07497 K07497; putative transposase
D PFREUD_24970 tniA; TniA protein K07497 K07497; putative transposase
D PFREUD_24410 tnpB; Transposase K07497 K07497; putative transposase
D PFREUD_24430 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24510 tnpA; Transposase IS3/IS911 K07497 K07497; putative transposase
D PFREUD_24520 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24600 tnpA; Transposase IS3/IS911 K07497 K07497; putative transposase
D PFREUD_24610 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24620 tnpA; Transposase IS3/IS911 K07497 K07497; putative transposase
D PFREUD_24630 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24240 tnpA; Transposase IS3/IS911 K07497 K07497; putative transposase
D PFREUD_24250 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24290 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24320 tnpB; Transposase K07497 K07497; putative transposase
D PFREUD_24340 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24740 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24750 tnpA; Transposase IS3/IS911 K07497 K07497; putative transposase
D PFREUD_24710 tnpB; Transposase K07497 K07497; putative transposase
D PFREUD_24770 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24840 tnp; Transposase K07497 K07497; putative transposase
D PFREUD_24900 tnpB; Transposase K07497 K07497; putative transposase
D PFREUD_24930 tnpB; Transposase K07497 K07497; putative transposase
D PFREUD_25100 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_25110 tnpA; Transposase IS3/IS911 K07497 K07497; putative transposase
D PFREUD_25040 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_25050 tnpA; Transposase IS3/IS911 K07497 K07497; putative transposase
D PFREUD_25150 tnpA; Transposase IS3/IS911 K07497 K07497; putative transposase
D PFREUD_25160 int; Integrase, catalytic region K07497 K07497; putative transposase
D PFREUD_24990 int; Integrase, catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D PFREUD_15890 pspA; Phage shock protein A K03969 pspA; phage shock protein A
D PFREUD_03830 Hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D PFREUD_02360 galP; Sodium:galactoside symporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D PFREUD_03400 aroP; Aromatic amino acid transport protein aroP K03293 TC.AAT; amino acid transporter, AAT family
D PFREUD_02130 proY; Proline-specific permease proY K03293 TC.AAT; amino acid transporter, AAT family
D PFREUD_04490 PPA2042; Putative low-affinity phosphate transport protein K03306 TC.PIT; inorganic phosphate transporter, PiT family
D PFREUD_20910 slgT; Na+/galactose cotransporter / Sodium/glucose cotransporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D PFREUD_02790 codB; Permease for cytosine/purines, uracil, thiamine, allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D PFREUD_03350 cytX; Hydroxymethylpyrimidine transporter CytX K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D PFREUD_21430 citT; malate transporter yflS K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D PFREUD_03990 transport protein K07085 K07085; putative transport protein
C 99978 Cell growth
D PFREUD_17960 Recombinase K06400 spoIVCA; site-specific DNA recombinase
C 99993 Cell motility
C 99995 Signaling proteins
D PFREUD_16500 cstA; Carbon starvation protein K06200 cstA; carbon starvation protein
D PFREUD_19810 typA; GTP-binding protein typA/BipA (Tyrosine phosphorylated protein A) K06207 typA; GTP-binding protein
D PFREUD_04750 UPF0237 protein K07166 K07166; ACT domain-containing protein
D PFREUD_08840 phoH; Phosphate starvation-inducible protein PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D PFREUD_08230 Hypothetical membrane protein K11744 tqsA; AI-2 transport protein TqsA
D PFREUD_09010 pduB; Propanediol utilization protein PduB K27263 pduB; bacterial microcompartment shell protein
D PFREUD_09080 pduJ; propanediol utilization protein PduJ K27266 pduJ; bacterial microcompartment shell protein
D PFREUD_09070 pduK; Propanediol utilization protein PduK K27267 pduK; bacterial microcompartment shell protein
C 99994 Others
D PFREUD_18800 phoU; Putative phosphate transport system protein K02039 phoU; phosphate transport system protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PFREUD_20580 helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D PFREUD_18510 drug exporters of the RND superfamily K06994 K06994; putative drug exporter of the RND superfamily
D PFREUD_23950 drug exporters of the RND superfamily K06994 K06994; putative drug exporter of the RND superfamily
D PFREUD_17130 Hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D PFREUD_08300 hydrolase, haloacid dehalogenase-like hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D PFREUD_14980 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D PFREUD_14970 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D PFREUD_03430 Hypothetical protein K07038 K07038; inner membrane protein
D PFREUD_00900 TRNA processing ribonuclease BN K07058 K07058; membrane protein
D PFREUD_12280 Ribonuclease_BN K07058 K07058; membrane protein
D PFREUD_19190 lemA; transmembrane protein K03744 lemA; LemA protein
D PFREUD_19180 dedD; Conserved membrane protein (DedA family) K03975 dedA; membrane-associated protein
D PFREUD_12270 transporter K01421 yhgE; putative membrane protein
D PFREUD_00850 Hypothetical membrane protein K08972 K08972; putative membrane protein
C 99997 Function unknown
D PFREUD_17030 PPA0563; Conserved protein containing thioredoxin domain K06888 K06888; uncharacterized protein
D PFREUD_14360 Hypothetical protein K06960 K06960; uncharacterized protein
D PFREUD_01670 acetyltransferase K06975 K06975; uncharacterized protein
D PFREUD_10000 acetyltransferase K06975 K06975; uncharacterized protein
D PFREUD_14700 Acetyltransferase family protein K06976 K06976; uncharacterized protein
D PFREUD_14500 Hypothetical protein K07005 K07005; uncharacterized protein
D PFREUD_17120 Hypothetical protein K07005 K07005; uncharacterized protein
D PFREUD_19390 Metallophosphoesterase K07098 K07098; uncharacterized protein
D PFREUD_16380 gpt; Putative purine phosphoribosyltransferase K07101 K07101; uncharacterized protein
D PFREUD_04510 NADH-flavin reductase K07118 K07118; uncharacterized protein
D PFREUD_04520 NADH-flavin reductase K07118 K07118; uncharacterized protein
D PFREUD_00680 dehydrogenase K07124 K07124; uncharacterized protein
D PFREUD_11800 Hypothetical protein K07150 K07150; uncharacterized protein
D PFREUD_16080 Hypothetical protein K07164 K07164; uncharacterized protein
D PFREUD_24200 Hypothetical protein K08998 K08998; uncharacterized protein
D PFREUD_12320 unnamed protein product K08999 K08999; uncharacterized protein
D PFREUD_17300 Hypothetical protein K09009 K09009; uncharacterized protein
D PFREUD_09570 GatB_Yqey, GatB/Yqey K09117 K09117; uncharacterized protein
D PFREUD_17360 Hypothetical protein K09117 K09117; uncharacterized protein
D PFREUD_09960 Hypothetical secreted and membrane protein K09118 K09118; uncharacterized protein
D PFREUD_00200 Hypothetical protein K09141 K09141; uncharacterized protein
D PFREUD_04740 UPF0210 protein K09157 K09157; uncharacterized protein
D PFREUD_06010 Hypothetical protein K09780 K09780; uncharacterized protein
D PFREUD_07410 Hypothetical protein K09791 K09791; uncharacterized protein
D PFREUD_14650 Hypothetical protein K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 21, 2024