+F Repair protein KO #

  DNA Repair and Recombination Proteins - Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E PFREUD_17090 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PFREUD_17180 mpg; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PFREUD_20170 mutY; MutY, A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PFREUD_19440 nth; Putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PFREUD_06390 mutT; 8-dihydro-8-oxoguanine-triphosphatase (Mutator MutT protein/7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PFREUD_02720 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PFREUD_10620 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E PFREUD_17090 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PFREUD_00870 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E PFREUD_17180 mpg; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PFREUD_20170 mutY; MutY, A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PFREUD_23590 tagA; 3-Methyladenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PFREUD_07110 mutM2; Formamidopyrimidine-DNA glycosylase (DNA-formamidopyrimidine glycosylase) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PFREUD_01050 mutM1; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PFREUD_14440 mutM3; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PFREUD_19440 nth; Putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PFREUD_05380 xthA; Exodeoxyribonuclease III/exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PFREUD_23010 nfo; endonuclease IV (deoxyribonuclease IV (phage-T4-induced)) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PFREUD_15360 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PFREUD_07500 uvrA1; Excinuclease ABC subunit A-like protein K03701 uvrA; excinuclease ABC subunit A E PFREUD_15260 uvrA3; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A E PFREUD_15300 uvrB; UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B E PFREUD_15200 uvrC; UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C E PFREUD_09880 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PFREUD_06800 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PFREUD_09820 urvD; UvrD/REP helicase / ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PFREUD_15360 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PFREUD_05600 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase subunit beta) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PFREUD_05610 rpoC; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PFREUD_06070 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase subunit alpha) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PFREUD_11420 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PFREUD_17350 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E PFREUD_16980 xseA; Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PFREUD_16990 xseB; Exodeoxyribonuclease 7 small subunit (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PFREUD_11830 dnaE1; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PFREUD_00080 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PFREUD_08660 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PFREUD_20530 dnaX; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PFREUD_01710 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PFREUD_03820 Hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PFREUD_09880 uvrD; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PFREUD_06800 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PFREUD_09820 urvD; UvrD/REP helicase / ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PFREUD_07960 ssb2; Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein E PFREUD_23460 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein E PFREUD_02730 naeIV; NaeI very short patch repair endonuclease (V.NaeI) K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PFREUD_09850 recB; Exodeoxyribonuclease V beta chain RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PFREUD_09860 recC; Exodeoxyribonuclease V gamma subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PFREUD_09840 recD; Probable exodeoxyribonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PFREUD_13130 recA; RecA (Recombinase A) K03553 recA; recombination protein RecA E PFREUD_11710 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E PFREUD_11700 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PFREUD_11720 ruvC; Crossover junction endodeoxyribonuclease (Holliday junction nuclease) (Holliday junction resolvase) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PFREUD_11400 priA; Primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PFREUD_04360 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PFREUD_04370 sbcD; SbcD, DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PFREUD_13130 recA; RecA (Recombinase A) K03553 recA; recombination protein RecA E PFREUD_20150 sms; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E PFREUD_00090 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E PFREUD_14510 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PFREUD_08950 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E PFREUD_03840 recR; Recombination protein recR K06187 recR; recombination protein RecR E PFREUD_13660 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E PFREUD_11710 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E PFREUD_11700 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PFREUD_11720 ruvC; Crossover junction endodeoxyribonuclease (Holliday junction nuclease) (Holliday junction resolvase) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PFREUD_03690 CRISPR-associated protein Cas1/Cas4 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E PFREUD_04360 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PFREUD_04370 sbcD; SbcD, DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PFREUD_00160 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PFREUD_12800 gyrA2; DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing)) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PFREUD_00150 gyrB2; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PFREUD_12820 gyrB1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PFREUD_20560 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PFREUD_08950 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F PFREUD_03840 recR; Recombination protein recR K06187 recR; recombination protein RecR F PFREUD_08130 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F PFREUD_07500 uvrA1; Excinuclease ABC subunit A-like protein K03701 uvrA; excinuclease ABC subunit A F PFREUD_15260 uvrA3; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A F PFREUD_15300 uvrB; UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PFREUD_07630 dinB; Nucleotidyltransferase/DNA polymerase involved in DNA repair (DNA polymerase IV) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PFREUD_15620 dinP; DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PFREUD_21250 umuC_rumB; DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D PFREUD_21240 umuD; Prophage repressor precursor (Peptidase family S24) K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PFREUD_13130 recA; RecA (Recombinase A) K03553 recA; recombination protein RecA D PFREUD_13040 lexA; LexA repressor, Peptidase S24, SOS regulatory protein dinR K01356 lexA; repressor LexA [EC:3.4.21.88] D PFREUD_13660 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D PFREUD_15640 dnaE2; DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PFREUD_07960 ssb2; Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2) K03111 ssb; single-strand DNA-binding protein D PFREUD_23460 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein D PFREUD_13120 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PFREUD_13050 dinG; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PFREUD_13150 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D PFREUD_06390 mutT; 8-dihydro-8-oxoguanine-triphosphatase (Mutator MutT protein/7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PFREUD_02720 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PFREUD_10620 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PFREUD_19940 NUDIX hydrolase NTP pyrophosphohydrolases including oxidative damage repair enzymes K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D PFREUD_13640 nudF; ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D PFREUD_13010 nrdJ; Vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024