+E Transcription factors KO
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Transcription Factors - Phaeobacter inhibens DSM 17395
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D PGA1_c09390 naeIM; modification methylase NaeI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PGA1_c22570 cytosine-specific DNA methylase domain-containing protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D PGA1_c14190 putative transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PGA1_c02800 putative transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PGA1_c30530 HTH-type transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator
D PGA1_c29030 HTH-type transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PGA1_c02760 putative methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PGA1_c12510 transcriptional regulator, AraC family K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D PGA1_c23310 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PGA1_c25530 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PGA1_78p00320 putative HTH-type transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PGA1_c15870 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PGA1_262p01480 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D PGA1_c24570 HTH-type transcriptional regulator, LysR type K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PGA1_c03380 putative glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PGA1_c22770 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PGA1_c27230 transcriptional regulator, lysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PGA1_c15720 putative glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PGA1_262p01360 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PGA1_262p00200 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PGA1_c02580 putative HTH-type transcriptional regulator pcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D PGA1_c11710 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PGA1_78p00220 transcriptional regulatory protein, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D PGA1_78p00040 oxyR; hydrogen peroxide-inducible genes activator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PGA1_c21740 transcriptional regulator, ArgP family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PGA1_c33790 putative HTH-type transcriptional regulator, LysR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D PGA1_c33710 HTH-type transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D PGA1_c33740 HTH-type transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D PGA1_262p00990 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
C DeoR family
D PGA1_c31340 HTH-type transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D PGA1_c23250 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D PGA1_c23400 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D PGA1_c08250 putative glycerol-3-phosphate regulon repressor glpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D PGA1_c07800 putative transcriptional regulator, lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PGA1_c07850 transcriptional regulator, lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PGA1_c07190 transcriptional regulator, IclR family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PGA1_c13990 putative transcriptional regulator, iacl family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PGA1_78p00150 putative HTH-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PGA1_c33870 putative HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D PGA1_c04230 putative phosphonates metabolism transcriptional regulator phnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D PGA1_c36370 HTH-type transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D PGA1_c27900 ligand-binding UTRA domain-containing protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D PGA1_c13080 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D PGA1_c00760 putative pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PGA1_c16730 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PGA1_c13860 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PGA1_c19460 transcription regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PGA1_c28810 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PGA1_262p01530 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PGA1_c28300 transcriptional regulator, GntR family K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D PGA1_c21120 transcriptional regulator, GntR fmaily K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator
C TetR/AcrR family
D PGA1_c21700 betI; HTH-type transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PGA1_262p02340 putative transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PGA1_c12830 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D PGA1_c30430 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PGA1_262p01950 putative transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PGA1_c17200 transcriptional regulator, TetR family K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
C Lrp/AsnC family
D PGA1_c11760 putative proline dehydrogenase transcriptional activator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c19400 putative leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c04500 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c06600 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c16610 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c07130 putative leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c20490 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c30410 HTH-type transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c30510 putative leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_262p00180 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_262p00760 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PGA1_c06590 putative transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D PGA1_c20730 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D PGA1_c25250 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D PGA1_c03880 raiR; putative transcriptional activator protein RaiR K25873 raiR; LuxR family transcriptional regulator, quorum-sensing system regulator RaiR
C MarR family
D PGA1_c12190 transcriptional regulator, MarR family K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D PGA1_c34090 ohrR; organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D PGA1_c02530 hmrR; HTH-type transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PGA1_c03310 soxR1; redox-sensitive transcriptional activator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D PGA1_c11400 fur; ferric uptake regulation protein Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PGA1_262p01580 putative metal ion uptake regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D PGA1_262p02230 zinc uptake regulation protein zur-like protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D PGA1_c04670 putative metal ion uptake regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D PGA1_c07170 acetate operon repressor-like protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D PGA1_c05540 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D PGA1_78p00330 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PGA1_c23680 putative transcriptional regulator, crp family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PGA1_c30140 fnrL; transcriptional activator protein FnrL K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PGA1_c19680 putative transcriptional regulator, crp family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PGA1_c19590 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PGA1_262p01250 transcriptional regulator, crp family K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D PGA1_c15350 putative transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D PGA1_78p00090 putative HTH-type transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D PGA1_c26400 putative HTH-type transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D PGA1_c28800 putative HTH-type transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PGA1_c15000 putative transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4]
C XRE family
D PGA1_c21630 putative transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D PGA1_c12680 transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D PGA1_c29470 puttative helix-turn-helix protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D PGA1_c34340 putative HTH-type transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D PGA1_c05170 penicillinase repressor blaI/mecI-like protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D PGA1_c10560 birA; biotin-[acetyl-CoA-carboxylase] synthetase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PGA1_c21240 helix-turn-helix domain-containing protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D PGA1_c11010 hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D PGA1_c11750 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D PGA1_c09820 hypothetical protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PGA1_c35070 parB; chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PGA1_c19310 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PGA1_262p00020 plamid partition protein-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PGA1_78p00600 putative parB-like nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PGA1_65p00460 putative plasmid partition protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PGA1_c07540 transcription factor carD-like protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D PGA1_262p00420 hypothetical protein K15545 mlc; transcriptional regulator of PTS gene
D PGA1_c35020 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D PGA1_c26840 putative phenylacetic acid degradation operon negative regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D PGA1_c03130 hypothetical protein K07735 algH; putative transcriptional regulator
D PGA1_c24050 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D PGA1_c11040 dksA; dnaK suppressor protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D PGA1_c08860 nrdR; transcriptional repressor K07738 nrdR; transcriptional repressor NrdR
D PGA1_c09480 mraZ; putative protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0