+F	Repair protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Repair and Recombination Proteins - Pseudobacter ginsenosidimutans</h2>
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A<b>Eukaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      FSB84_21720 methylated-DNA--[protein]-cysteine S-methyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      FSB84_01790 deoxyribodipyrimidine photo-lyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        FSB84_25365 uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        FSB84_03515 DNA-3-methyladenine glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] 
E        FSB84_08820 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        FSB84_05075 nth; endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
D      Long Patch-BER factors
E        DNA polymerase delta complex
E        DNA polymerase epsilon complex
D      Short Patch-BER factors
D      Other BER factors
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        XPC-HR23B-CETN2 complex
E        Cul4-DDB2 complex
E        NER4 complex
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase II complex
E        Cul4-CSA complex
E        Other TCR factor
D      TFIIH complex
D      RPA (replication factor A)
D      Other NER factors
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      MutL homologs
D      DNA polymerase delta complex
D      RPA (replication factor A)
D      RFC (replication factor C)
D      Other MMR factors
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      MRN(MRX) complex
D      BRCA1-core complex
D      BRCA1-A complex
D      BRCA1-B complex
D      BRCA1-C complex
D      BRCA complex
D      RecA family proteins
D      Rad52 family proteins
D      Rad54 family proteins
D      RecQ family DNA helicases
D      Bloom's syndrome complex (BTR)
D      RPA (replication factor A)
D      Protein phosphatase 4
D      AP-5 complex
D      SMC5-SMC6 complex
D      Other HR factors
C    NHEJ (non-homologous end-joining)
D      DNA-PK complex
D      MRX complex
D      DNA Ligase 4 complex
D      X-family DNA polymerases
D      Other NHEJ factors
C    FA (Fanconi anemia) pathway
D      FA core complex
D      FA core complex binding factors
D      Bloom's syndrome complex (BTR)
D      FANCD2-I complex
D      Downstream FA components
D      Other FA pathway factors
C    Other DSBR factors
D      Protein phosphatase 6
D      Ubiquitin ligases
D      Others
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
C    B-family DNA polymerases
C    A-family DNA polymerase
C    Rad6 epistasis group
C    Other TLS factors
B  Check point factors
C    Rad9-Hus1-Rad1 complex
C    HRAD17(Rad24)-RFC complex
C    Rad17-Mec3-Ddc1 complex
C    FPC (fork protection complex)
C    Triple T complex
C    BAG6-UBL4A-GET4 complex
C    Other check point factors
B  Other factors with a suspected DNA repair function
C    DNA polymerases
C    Nucleases
D      FSB84_10070 S1/P1 nuclease	K05986 NUCS; nuclease S1 [EC:3.1.30.1] 
C    Helicases
C    PSO4 complex
C    Modulation of nucleotide pools
D      FSB84_15660 NUDIX domain-containing protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      FSB84_03550 dUTP diphosphatase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
#
A<b>Prokaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      FSB84_21720 methylated-DNA--[protein]-cysteine S-methyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      FSB84_15440 methylated-DNA--[protein]-cysteine S-methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] 
D      FSB84_18625 methylated-DNA--[protein]-cysteine S-methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] 
D      FSB84_01790 deoxyribodipyrimidine photo-lyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        FSB84_25365 uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        FSB84_08550 DNA-3-methyladenine glycosylase 2 family protein	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
E        FSB84_07955 DNA-3-methyladenine glycosylase 2 family protein	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
E        FSB84_03515 DNA-3-methyladenine glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] 
E        FSB84_08820 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        FSB84_05285 DNA-3-methyladenine glycosylase I	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] 
E        FSB84_29340 endonuclease	K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] 
E        FSB84_05075 nth; endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
E        FSB84_08370 endonuclease/exonuclease/phosphatase family protein	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        FSB84_17355 xth; exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        FSB84_22485 hypothetical protein	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        FSB84_08170 xth; exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
D      RecJ
E        FSB84_01885 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
D      DNA ligase
E        FSB84_08065 ligA; DNA ligase (NAD(+)) LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      DNA polymerase I
E        FSB84_06520 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        FSB84_01455 uvrA; excinuclease ABC subunit UvrA	K03701 uvrA; excinuclease ABC subunit A 
E        FSB84_12075 uvrA; excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
E        FSB84_06515 uvrB; excinuclease ABC subunit UvrB	K03702 uvrB; excinuclease ABC subunit B 
E        FSB84_04170 excinuclease ABC subunit C	K03703 uvrC; excinuclease ABC subunit C 
E        FSB84_06455 AAA family ATPase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        FSB84_08210 ATP-dependent helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        FSB84_06520 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
E        FSB84_08065 ligA; DNA ligase (NAD(+)) LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase complex (RNAP)
F          FSB84_00295 rpoB; DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
F          FSB84_00290 rpoC; DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
F          FSB84_28575 DNA-directed RNA polymerase subunit alpha	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        TRCF (transcription-repair coupling factor)
F          FSB84_03925 mfd; transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
E        FSB84_28445 mutS; DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_07450 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_16540 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_16545 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_29710 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_29715 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_12195 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_12200 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_12250 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_12255 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17035 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17040 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_25755 hypothetical protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_29865 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_29870 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17080 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17085 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17175 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17180 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17230 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_30185 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_30190 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17870 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17980 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_17985 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_26665 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_26670 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_26820 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_26825 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_26875 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_18175 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_26880 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_26980 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_26985 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_27265 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_27270 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_18775 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_18960 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_23180 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_23185 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_23260 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_23265 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_23320 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_23325 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_14485 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_14490 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_14565 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_14570 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_18965 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_01255 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_01260 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_02060 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_02065 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_02575 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_02580 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_02885 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_02890 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_27835 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_27840 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_06005 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_06010 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_14960 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_14965 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_15015 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_15020 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_15060 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_15065 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_10550 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_10700 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_10705 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_10730 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_10735 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_15130 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_15135 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_15205 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_15210 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_19740 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_19745 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_10820 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_10825 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_19865 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_19870 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_19880 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_19885 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_24210 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_24215 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_24275 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_24280 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_11085 DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_11220 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_11225 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_24605 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_24610 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_24690 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_24695 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_16070 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_16075 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_16120 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_16125 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_16185 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_16190 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_20610 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_20840 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_20845 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_29350 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_29355 DNA mismatch repair protein	K03555 mutS; DNA mismatch repair protein MutS 
E        FSB84_27715 DNA mismatch repair protein MutS	K07456 mutS2; DNA mismatch repair protein MutS2 
D      Molecular matchmaker
E        FSB84_05035 mutL; DNA mismatch repair endonuclease MutL	K03572 mutL; DNA mismatch repair protein MutL 
D      Strand discrimination factor
D      DNA exonucleases
E        FSB84_07190 xseA; exodeoxyribonuclease VII large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] 
E        FSB84_07195 xseB; exodeoxyribonuclease VII small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] 
D      DNA polymerase III holoenzyme
E        FSB84_27765 dnaE; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        FSB84_06780 dnaN; DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        FSB84_19370 holA; DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        FSB84_08770 hypothetical protein	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        FSB84_20165 DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        FSB84_28355 3'-5' exonuclease	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        FSB84_11235 DNA polymerase III subunit gamma/tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
D      DNA ligase
E        FSB84_08065 ligA; DNA ligase (NAD(+)) LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      Other MMR factors
E        FSB84_06455 AAA family ATPase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        FSB84_08210 ATP-dependent helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        FSB84_01080 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
E        FSB84_07255 vsr; DNA mismatch endonuclease Vsr	K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] 
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      RecBC pathway proteins
E        FSB84_06495 recA; recombinase RecA	K03553 recA; recombination protein RecA 
E        FSB84_01730 ruvA; Holliday junction branch migration protein RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        FSB84_09880 ruvB; Holliday junction branch migration DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        FSB84_09780 ruvC; crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
E        FSB84_20335 priA; primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
D      RecFOR pathway proteins
E        FSB84_06495 recA; recombinase RecA	K03553 recA; recombination protein RecA 
E        FSB84_08790 radA; DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms 
E        FSB84_23775 recF; DNA replication and repair protein RecF	K03629 recF; DNA replication and repair protein RecF 
E        FSB84_11825 recG; ATP-dependent DNA helicase RecG	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
E        FSB84_01885 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        FSB84_09090 recO; DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
E        FSB84_08200 recR; recombination protein RecR	K06187 recR; recombination protein RecR 
E        FSB84_11345 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
E        FSB84_01730 ruvA; Holliday junction branch migration protein RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        FSB84_09880 ruvB; Holliday junction branch migration DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        FSB84_09780 ruvC; crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
D      AddAB pathway proteins
D      Other HR factor
E        FSB84_02985 cas1b; type I-B CRISPR-associated endonuclease Cas1	K15342 cas1; CRISP-associated protein Cas1 
D      Archaeal homologous recombinant proteins
E        FSB84_09900 DUF853 family protein	K06915 herA; DNA double-strand break repair helicase HerA and related ATPase 
C    NHEJ (non-homologous end-joining)
D      Two-component NHEJ DNA repair complex
E        FSB84_15555 Ku protein	K10979 ku; DNA end-binding protein Ku 
E        FSB84_10055 ligD; DNA ligase D	K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] 
E        FSB84_15560 hypothetical protein	K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] 
D      SHIIR (short-homology-independent illegitimate recombination)
E        Facilitator
F          FSB84_23615 gyrA; DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          FSB84_21760 topA; type I DNA topoisomerase	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
F          FSB84_15600 DNA topoisomerase IB	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
E        Supressor
F          FSB84_08160 HU family DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta 
D      SHDIR (short-homology-dependent illegitimate recombination)
E        RecET pathway
F          FSB84_01885 recJ; single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
F          FSB84_09090 recO; DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
F          FSB84_08200 recR; recombination protein RecR	K06187 recR; recombination protein RecR 
F          FSB84_08065 ligA; DNA ligase (NAD(+)) LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Facilitator
E        Supressor
F          FSB84_06860 recQ; DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          FSB84_09905 RecQ family ATP-dependent DNA helicase	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          FSB84_01455 uvrA; excinuclease ABC subunit UvrA	K03701 uvrA; excinuclease ABC subunit A 
F          FSB84_12075 uvrA; excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
F          FSB84_06515 uvrB; excinuclease ABC subunit UvrB	K03702 uvrB; excinuclease ABC subunit B 
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
D      FSB84_03200 dinB; DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
D      FSB84_12700 dinB; DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
D      FSB84_04925 Y-family DNA polymerase	K03502 umuC; DNA polymerase V 
D      FSB84_04920 umuD; translesion error-prone DNA polymerase V autoproteolytic subunit	K03503 umuD; DNA polymerase V [EC:3.4.21.-] 
C    Other SOS response factors
D      FSB84_06495 recA; recombinase RecA	K03553 recA; recombination protein RecA 
D      FSB84_11345 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
D      FSB84_12705 DNA polymerase III subunit alpha	K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] 
D      FSB84_01080 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
D      FSB84_06795 RecX family transcriptional regulator	K03565 recX; regulatory protein 
B  Other factors with a suspected DNA repair function
C    DNA polymerase
D      FSB84_18705 DNA polymerase/3'-5' exonuclease PolX	K02347 polX; DNA polymerase (family X) 
C    DNA helicases
D      FSB84_01180 ligase-associated DNA damage response DEXH box helicase	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] 
C    Modulation of nucleotide pools
D      FSB84_15660 NUDIX domain-containing protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      FSB84_03550 dUTP diphosphatase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
D      FSB84_10340 ribonucleoside-diphosphate reductase subunit alpha	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      FSB84_30020 ribonucleoside-diphosphate reductase subunit alpha	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      FSB84_09415 vitamin B12-dependent ribonucleotide reductase	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      FSB84_10335 ribonucleotide-diphosphate reductase subunit beta	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
D      FSB84_30015 ribonucleoside-diphosphate reductase	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
C    Others
D      FSB84_23825 bifunctional oligoribonuclease/PAP phosphatase NrnA	K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] 
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#Last updated: August 19, 2024