+F Repair protein KO #

  DNA Repair and Recombination Proteins - Paraburkholderia graminis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CUJ91_14460 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CUJ91_28905 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CUJ91_30960 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CUJ91_15900 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CUJ91_25400 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CUJ91_01900 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CUJ91_05050 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E CUJ91_22805 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CUJ91_15650 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CUJ91_20340 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CUJ91_14210 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CUJ91_14460 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CUJ91_28905 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CUJ91_18080 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CUJ91_30960 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CUJ91_15900 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CUJ91_10655 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E CUJ91_10380 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CUJ91_23325 hydroxyacid dehydrogenase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CUJ91_19575 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CUJ91_11265 DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CUJ91_18075 3-methyladenine DNA glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CUJ91_25400 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CUJ91_01900 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CUJ91_17380 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CUJ91_01895 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CUJ91_05050 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CUJ91_11745 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CUJ91_00710 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CUJ91_19610 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CUJ91_11580 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CUJ91_10285 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CUJ91_31005 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CUJ91_02000 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E CUJ91_06410 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CUJ91_06170 excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E CUJ91_12890 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CUJ91_13155 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CUJ91_12430 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CUJ91_31005 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CUJ91_10285 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CUJ91_16640 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CUJ91_16635 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CUJ91_16470 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CUJ91_13815 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CUJ91_08330 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CUJ91_11325 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E CUJ91_02715 DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CUJ91_14370 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CUJ91_31030 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CUJ91_05145 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CUJ91_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CUJ91_03870 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E CUJ91_15260 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CUJ91_08675 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CUJ91_13770 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CUJ91_12790 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CUJ91_08105 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CUJ91_10285 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CUJ91_13155 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CUJ91_12430 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CUJ91_32000 hypothetical protein K03111 ssb; single-strand DNA-binding protein E CUJ91_02010 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CUJ91_32815 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CUJ91_04530 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CUJ91_06920 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E CUJ91_06915 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E CUJ91_06925 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CUJ91_14880 recA; recombinase RecA K03553 recA; recombination protein RecA E CUJ91_15110 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CUJ91_15115 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CUJ91_15105 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CUJ91_17755 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CUJ91_07905 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E CUJ91_33120 nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E CUJ91_33110 metallophosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E CUJ91_14880 recA; recombinase RecA K03553 recA; recombination protein RecA E CUJ91_10355 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CUJ91_02510 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CUJ91_11580 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CUJ91_12935 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CUJ91_08115 recombination protein RecR K06187 recR; recombination protein RecR E CUJ91_02610 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CUJ91_05165 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E CUJ91_15110 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CUJ91_15115 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CUJ91_15105 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E CUJ91_33120 nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E CUJ91_33110 metallophosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E CUJ91_33280 Ku protein K10979 ku; DNA end-binding protein Ku E CUJ91_08250 Ku protein K10979 ku; DNA end-binding protein Ku E CUJ91_31230 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E CUJ91_33215 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E CUJ91_08255 ligD; DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CUJ91_13455 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CUJ91_00020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CUJ91_22725 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CUJ91_26765 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F CUJ91_33720 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F CUJ91_33740 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F CUJ91_17970 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F CUJ91_08440 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CUJ91_11580 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CUJ91_12935 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CUJ91_08115 recombination protein RecR K06187 recR; recombination protein RecR F CUJ91_10285 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CUJ91_15090 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F CUJ91_12240 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F CUJ91_13415 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F CUJ91_20245 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CUJ91_16630 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CUJ91_02000 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F CUJ91_06410 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CUJ91_06170 excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B F CUJ91_00240 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F CUJ91_00285 histone K03746 hns; DNA-binding protein H-NS F CUJ91_18700 DNA-binding protein K03746 hns; DNA-binding protein H-NS F CUJ91_31410 histidine biosynthesis protein K03746 hns; DNA-binding protein H-NS F CUJ91_33180 histone K03746 hns; DNA-binding protein H-NS F CUJ91_17355 H-NS histone K03746 hns; DNA-binding protein H-NS F CUJ91_21780 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F CUJ91_30310 H-NS histone K03746 hns; DNA-binding protein H-NS F CUJ91_00990 H-NS histone K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CUJ91_20070 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CUJ91_14880 recA; recombinase RecA K03553 recA; recombination protein RecA D CUJ91_07830 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CUJ91_02610 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CUJ91_26885 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D CUJ91_06100 hypothetical protein K14160 imuA; protein ImuA D CUJ91_31300 recombinase RecA K14160 imuA; protein ImuA D CUJ91_32380 recombinase RecA K14160 imuA; protein ImuA D CUJ91_06105 UMUC domain-containing protein DNA-repair protein K14161 imuB; protein ImuB D CUJ91_31305 DNA polymerase K14161 imuB; protein ImuB D CUJ91_32375 DNA polymerase K14161 imuB; protein ImuB D CUJ91_06110 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CUJ91_31310 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CUJ91_32000 hypothetical protein K03111 ssb; single-strand DNA-binding protein D CUJ91_02010 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CUJ91_32815 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CUJ91_14875 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CUJ91_17695 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CUJ91_11355 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CUJ91_22685 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D CUJ91_15650 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CUJ91_20340 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CUJ91_14210 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CUJ91_25510 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CUJ91_15535 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CUJ91_15530 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024