+F Repair protein KO
#
DNA Repair and Recombination Proteins - Porphyromonas gingivalis TDC60
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PGTDC60_1602 ogt; methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E PGTDC60_0517 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PGTDC60_2090 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PGTDC60_1364 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
E PGTDC60_0695 metal dependent phosphohydrolase K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D PGTDC60_0875 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PGTDC60_1602 ogt; methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E PGTDC60_0517 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PGTDC60_2090 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PGTDC60_1364 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E PGTDC60_0549 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E PGTDC60_0336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E PGTDC60_1225 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E PGTDC60_0100 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E PGTDC60_0958 uvrA-1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E PGTDC60_2237 uvrA-2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E PGTDC60_1495 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E PGTDC60_0266 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E PGTDC60_0960 ATP-dependent DNA helicase UvrD/PcrA/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PGTDC60_0100 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E PGTDC60_1225 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F PGTDC60_1509 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F PGTDC60_1510 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F PGTDC60_0181 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F PGTDC60_1362 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E PGTDC60_0375 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E PGTDC60_1499 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
E PGTDC60_1136 MutS family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E PGTDC60_1524 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E PGTDC60_1087 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E PGTDC60_2030 hydrolase K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E PGTDC60_0035 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E PGTDC60_0116 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E PGTDC60_0871 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E PGTDC60_0855 DNA polymerase III, delta prime subunit, putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E PGTDC60_0115 putative DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PGTDC60_0502 putative DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PGTDC60_2042 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E PGTDC60_1225 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E PGTDC60_0960 ATP-dependent DNA helicase UvrD/PcrA/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PGTDC60_0551 ssb; single-stranded binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E PGTDC60_0809 recA; recombinase A K03553 recA; recombination protein RecA
E PGTDC60_1928 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PGTDC60_1603 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PGTDC60_2148 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E PGTDC60_0310 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E PGTDC60_0809 recA; recombinase A K03553 recA; recombination protein RecA
E PGTDC60_0505 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E PGTDC60_1513 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E PGTDC60_1464 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E PGTDC60_0777 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E PGTDC60_2081 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E PGTDC60_0336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E PGTDC60_0282 recO; DNA repair protein RecO, putative K03584 recO; DNA repair protein RecO (recombination protein O)
E PGTDC60_1227 recR; recombination protein RecR K06187 recR; recombination protein RecR
E PGTDC60_0112 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E PGTDC60_1928 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PGTDC60_1603 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PGTDC60_2148 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E PGTDC60_0255 CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1
E PGTDC60_0289 cas1; CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F PGTDC60_2077 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F PGTDC60_0600 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F PGTDC60_1872 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F PGTDC60_1229 hup-2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PGTDC60_0398 hup-1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F PGTDC60_0336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F PGTDC60_0282 recO; DNA repair protein RecO, putative K03584 recO; DNA repair protein RecO (recombination protein O)
F PGTDC60_1227 recR; recombination protein RecR K06187 recR; recombination protein RecR
F PGTDC60_1225 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F PGTDC60_0063 recQ-2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F PGTDC60_1528 recQ-1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F PGTDC60_0958 uvrA-1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F PGTDC60_2237 uvrA-2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F PGTDC60_1495 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D PGTDC60_2134 umuC; umuC protein K03502 umuC; DNA polymerase V
D PGTDC60_2135 umuD; umuD protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D PGTDC60_0809 recA; recombinase A K03553 recA; recombination protein RecA
D PGTDC60_0112 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PGTDC60_0551 ssb; single-stranded binding protein K03111 ssb; single-strand DNA-binding protein
D PGTDC60_0433 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D PGTDC60_0875 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PGTDC60_1086 nrd; ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
D PGTDC60_1117 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024