+F Repair protein KO #

  DNA Repair and Recombination Proteins - Porphyromonas gingivalis TDC60

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PGTDC60_1602 ogt; methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E PGTDC60_0517 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PGTDC60_2090 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PGTDC60_1364 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors E PGTDC60_0695 metal dependent phosphohydrolase K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-] C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PGTDC60_0875 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PGTDC60_1602 ogt; methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E PGTDC60_0517 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PGTDC60_2090 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PGTDC60_1364 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PGTDC60_0549 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PGTDC60_0336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PGTDC60_1225 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PGTDC60_0100 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PGTDC60_0958 uvrA-1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E PGTDC60_2237 uvrA-2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E PGTDC60_1495 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E PGTDC60_0266 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E PGTDC60_0960 ATP-dependent DNA helicase UvrD/PcrA/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PGTDC60_0100 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PGTDC60_1225 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PGTDC60_1509 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PGTDC60_1510 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PGTDC60_0181 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PGTDC60_1362 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PGTDC60_0375 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E PGTDC60_1499 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 E PGTDC60_1136 MutS family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E PGTDC60_1524 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E PGTDC60_1087 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PGTDC60_2030 hydrolase K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PGTDC60_0035 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PGTDC60_0116 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PGTDC60_0871 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PGTDC60_0855 DNA polymerase III, delta prime subunit, putative K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PGTDC60_0115 putative DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PGTDC60_0502 putative DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PGTDC60_2042 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PGTDC60_1225 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PGTDC60_0960 ATP-dependent DNA helicase UvrD/PcrA/Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PGTDC60_0551 ssb; single-stranded binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PGTDC60_0809 recA; recombinase A K03553 recA; recombination protein RecA E PGTDC60_1928 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PGTDC60_1603 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PGTDC60_2148 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PGTDC60_0310 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E PGTDC60_0809 recA; recombinase A K03553 recA; recombination protein RecA E PGTDC60_0505 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PGTDC60_1513 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E PGTDC60_1464 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PGTDC60_0777 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PGTDC60_2081 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PGTDC60_0336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PGTDC60_0282 recO; DNA repair protein RecO, putative K03584 recO; DNA repair protein RecO (recombination protein O) E PGTDC60_1227 recR; recombination protein RecR K06187 recR; recombination protein RecR E PGTDC60_0112 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PGTDC60_1928 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PGTDC60_1603 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PGTDC60_2148 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PGTDC60_0255 CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1 E PGTDC60_0289 cas1; CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PGTDC60_2077 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PGTDC60_0600 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PGTDC60_1872 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PGTDC60_1229 hup-2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F PGTDC60_0398 hup-1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PGTDC60_0336 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PGTDC60_0282 recO; DNA repair protein RecO, putative K03584 recO; DNA repair protein RecO (recombination protein O) F PGTDC60_1227 recR; recombination protein RecR K06187 recR; recombination protein RecR F PGTDC60_1225 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F PGTDC60_0063 recQ-2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PGTDC60_1528 recQ-1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PGTDC60_0958 uvrA-1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F PGTDC60_2237 uvrA-2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F PGTDC60_1495 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PGTDC60_2134 umuC; umuC protein K03502 umuC; DNA polymerase V D PGTDC60_2135 umuD; umuD protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PGTDC60_0809 recA; recombinase A K03553 recA; recombination protein RecA D PGTDC60_0112 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PGTDC60_0551 ssb; single-stranded binding protein K03111 ssb; single-strand DNA-binding protein D PGTDC60_0433 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D PGTDC60_0875 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PGTDC60_1086 nrd; ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D PGTDC60_1117 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024