+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudoalteromonas translucida TAC125

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PSHAb0293 ogt; putative Methylated-DNA-[protein]-cysteine S-methyltransferase; O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PSHAa2200 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PSHAb0453 phr; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PSHAa2561 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSHAa0554 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSHAa1099 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D PSHAb0342 putative S1/P1 Nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D PSHAa2744 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PSHAb0293 ogt; putative Methylated-DNA-[protein]-cysteine S-methyltransferase; O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PSHAa2200 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PSHAb0453 phr; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PSHAa0994 conserved protein of unknown function K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E PSHAa2561 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSHAb0291 putative ADA regulatory protein (Regulatory protein of adaptative response) K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PSHAa0554 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSHAa0788 tag; putative 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PSHAa0447 mutM; formamidopyrimidine DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PSHAa1099 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PSHAa1339 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PSHAa0516 recJ; Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PSHAa1083 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PSHAa2757 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PSHAa2707 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A E PSHAa1110 uvrB; ATP-dependent DNA excision repair enzyme UvrAC K03702 uvrB; excinuclease ABC subunit B E PSHAa1915 uvrC; DNA repair enzyme together with UvrAB; incision nuclease subunit C; repair of UV damage to DNA K03703 uvrC; excinuclease ABC subunit C E PSHAa0122 uvrD; DNA-dependent ATPase I and helicase II; highly similar to PSHA_1_2804 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSHAa1096 uvrD; DNA helicase II. K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSHAa2757 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7] E PSHAa1083 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PSHAa0222 rpoB; DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PSHAa0223 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PSHAa2806 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PSHAa2791 rpoZ; DNA-directed RNA polymerase omega chain (EC 2.7. 7.6) (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PSHAa1836 mfd; transcription-repair ATP-dependent coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PSHAa0692 mutS; methyl-directed mismatch repair ATP-binding protein, dimer/tetramer, associates to MutL, triggers MutH activity on hemimethylated GATC K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PSHAa0269 mutL; Enzyme in GATC methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E PSHAa0743 mutH; methyl-directed mismatch repair protein with restriction endonuclease-like domain K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E PSHAa1255 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSHAa0647 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PSHAa2364 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PSHAa2015 dnaE; DNA polymerase III, alpha subunit; the entire polymerase contains 10 subunits K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PSHAa0002 dnaN; DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PSHAa2424 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PSHAa1029 holA; Putative DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PSHAa1802 holB; putative DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PSHAa1435 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSHAa1963 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSHAa0589 putative DNA polymerase, exonuclease activity K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSHAa1996 conserved protein of unknown function; putative enzyme K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSHAa1201 putative DnaX, DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PSHAa1083 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PSHAa0122 uvrD; DNA-dependent ATPase I and helicase II; highly similar to PSHA_1_2804 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSHAa1096 uvrD; DNA helicase II. K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSHAa2705 ssb; Single-strand binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein E PSHAa2712 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PSHAa1858 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PSHAa1859 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PSHAa1857 recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PSHAa0694 recA; RecA protein (Recombinase A) K03553 recA; recombination protein RecA E PSHAa1876 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA E PSHAa1875 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSHAa1877 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PSHAa2728 priA; Primosome factor Y, also called protein n'; ATP-dependent DNA helicase activity required for recA-dependent stable DNA replication mode; also involved in double-strand break repair K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PSHAa2441 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E PSHAa1993 conserved protein of unknown function K04067 priC; primosomal replication protein N'' E PSHAa1255 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSHAb0054 sbcC; exonuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E PSHAa1895 putative orphan protein K03546 sbcC; DNA repair protein SbcC/Rad50 E PSHAb0055 sbcD; exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PSHAa0694 recA; RecA protein (Recombinase A) K03553 recA; recombination protein RecA E PSHAa0663 radA; putative DNA repair protein radA (DNA repair protein sms) K04485 radA; DNA repair protein RadA/Sms E PSHAa0003 recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K03629 recF; DNA replication and repair protein RecF E PSHAa2799 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PSHAa0516 recJ; Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PSHAa0734 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E PSHAa1203 recR; recombination protein recR K06187 recR; recombination protein RecR E PSHAa1218 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) E PSHAa2381 rdgC; nucleoid-associated protein K03554 rdgC; recombination associated protein RdgC E PSHAa1876 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA E PSHAa1875 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSHAa1877 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PSHAa1985 yejH; putative ATP-dependent helicase with nucleoside triP hydrolase domain K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E PSHAb0054 sbcC; exonuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E PSHAa1895 putative orphan protein K03546 sbcC; DNA repair protein SbcC/Rad50 E PSHAb0055 sbcD; exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PSHAa1421 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PSHAa0004 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PSHAa1348 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PSHAa1287 hupA; DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation K05787 hupA; DNA-binding protein HU-alpha F PSHAb0462 hupB; DNA-binding protein HU-beta (NS1) (HU-1) K03530 hupB; DNA-binding protein HU-beta F PSHAa2059 hupB; DNA-binding protein HU-beta (NS1) (HU-1) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PSHAa0516 recJ; Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PSHAa0734 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F PSHAa1203 recR; recombination protein recR K06187 recR; recombination protein RecR F PSHAa1083 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PSHAa0346 fis; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PSHAa1902 ihfA; integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication K04764 ihfA; integration host factor subunit alpha F PSHAa1426 ihfB; putative integration host factor (iHF), beta subunit, site-specific recombination K05788 ihfB; integration host factor subunit beta E Supressor F PSHAa1255 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PSHAa2572 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSHAb0119 putative helicase (recQ-like) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSHAa2707 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A F PSHAa1110 uvrB; ATP-dependent DNA excision repair enzyme UvrAC K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PSHAa2389 dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PSHAb0536 umuC; component of DNA polymerase V with UmuD K03502 umuC; DNA polymerase V D PSHAb0537 umuD; component of DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PSHAa0694 recA; RecA protein (Recombinase A) K03553 recA; recombination protein RecA D PSHAa2873 lexA; transcriptional repressor for SOS response K01356 lexA; repressor LexA [EC:3.4.21.88] D PSHAa1218 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N) D PSHAa1990 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PSHAa2705 ssb; Single-strand binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein D PSHAa0531 recX; putative regulatory protein, inhibitor of RecA recombinase and coprotease activities K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PSHAa2762 rep; Rep helicase, a single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PSHAa1890 helD; putative helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D PSHAb0497 yoaA; putative ATP-dependent helicase YoaA with nucleotide triphosphate hydrolase domain, SOS repair, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PSHAa1991 dinG; putative ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D PSHAa2744 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSHAa1418 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PSHAa1417 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024