+E Transcription factors KO #

  Transcription Factors - Providencia heimbachae

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D NCTC12003_00817 btr; Bacillibactin transport regulator K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D NCTC12003_02672 rhaR_1; L-rhamnose operon transcriptional activator rhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D NCTC12003_02673 rhaS_3; L-rhamnose operon regulatory protein rhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D NCTC12003_03033 chbR; Chb operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D NCTC12003_01777 soxS_1; Regulatory protein soxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D NCTC12003_01180 rob_2; Right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D NCTC12003_00659 rob_1; Right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D NCTC12003_01308 rhaS_1; L-rhamnose operon regulatory protein rhaS K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA C LysR family D NCTC12003_01023 gcvA_1; Gcv operon activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D NCTC12003_01481 gcvA_2; Gcv operon activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D NCTC12003_03073 gcvA_4; Gcv operon activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D NCTC12003_03746 hcaR_2; Hca operon transcriptional activator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D NCTC12003_00566 gltR_1; HTH-type transcriptional regulator gltR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D NCTC12003_00687 nhaR; Na(+)/H(+) antiporter regulatory protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D NCTC12003_03825 oxyR; Morphology and auto-aggregation control protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D NCTC12003_01283 iciA; OriC replication inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D NCTC12003_01232 leuO; HTH-type transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D NCTC12003_01934 cysB_2; Cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D NCTC12003_01346 cysB_1; Cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D NCTC12003_03478 gcvA_5; Gcv operon activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D NCTC12003_00312 abgR_1; HTH-type transcriptional regulator AbgR K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D NCTC12003_00627 dmlR_3; D-malate degradation protein R K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D NCTC12003_00293 ampR; HTH-type transcriptional activator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D NCTC12003_00850 qseD_1; Quorum-sensing regulator protein D K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D NCTC12003_02401 qseD_2; Quorum-sensing regulator protein D K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D NCTC12003_03754 cynR_2; Cyn operon transcriptional activator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D NCTC12003_00524 deoR; Deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D NCTC12003_00268 glpR_1; Glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D NCTC12003_03167 lacR; Lactose phosphotransferase system repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor D NCTC12003_03466 glcR_2; HTH-type transcriptional repressor glcR K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D NCTC12003_00034 ulaR; HTH-type transcriptional regulator ulaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor C LacI family D NCTC12003_00074 rbsR_1; Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NCTC12003_00843 purR_1; Purine nucleotide synthesis repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NCTC12003_00222 ccpA_1; Catabolite control protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NCTC12003_03512 rhaR_2; L-rhamnose operon transcriptional activator rhaR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NCTC12003_01318 galR; Galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NCTC12003_03477 rbsR_2; Ribose operon repressor K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D NCTC12003_03844 cytR_2; HTH-type transcriptional repressor CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D NCTC12003_02388 ccpA_2; Probable catabolite control protein A K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D NCTC12003_01236 fruR; Catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D NCTC12003_02296 purR_2; Purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D NCTC12003_00461 gntR_1; Gluconate utilization system GNT-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D NCTC12003_03273 yvoA_2; HTH-type transcriptional repressor yvoA K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D NCTC12003_01510 yvoA_1; HTH-type transcriptional repressor yvoA K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D NCTC12003_01875 fadR_2; Fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D NCTC12003_03482 lutR_3; L-lactate utilization operon repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D NCTC12003_02796 lutR_1; L-lactate utilization operon repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D NCTC12003_01265 pdhR_2; Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D NCTC12003_03942 lutR_4; L-lactate utilization operon repressor K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D NCTC12003_03457 lutR_2; L-lactate utilization operon repressor K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D NCTC12003_02403 gabR_2; HTH-type transcriptional regulatory protein gabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D NCTC12003_02103 gabR_1; HTH-type transcriptional regulatory protein gabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D NCTC12003_02860 transcriptional regulator NanR K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism C TetR/AcrR family D NCTC12003_03311 tetR; Tetracycline repressor protein class D K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D NCTC12003_02531 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D NCTC12003_01059 acrR; Potential acrAB operon repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D NCTC12003_03923 slmA; Synthetically lethal with a defective Min system protein A K05501 slmA; TetR/AcrR family transcriptional regulator D NCTC12003_02427 nemR; HTH-type transcriptional repressor nemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D NCTC12003_00557 fadR_1; Fatty acid metabolism regulator protein K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D NCTC12003_03823 fabR; HTH-type transcriptional repressor fabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D NCTC12003_03313 kstR2; HTH-type transcriptional repressor KstR2 K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D NCTC12003_02879 acnR; HTH-type transcriptional repressor AcnR K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D NCTC12003_00065 asnC; Regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D NCTC12003_02782 lrp_2; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D NCTC12003_00771 lrp_1; Leucine-responsive regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D NCTC12003_02635 rcsA; Colanic acid capsular biosynthesis activation protein A K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor D NCTC12003_01123 malT; ATP-dependent transcriptional activator malT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D NCTC12003_02288 slyA; Salmolysin K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D NCTC12003_03010 yusO_2; Uncharacterized HTH-type transcriptional regulator yusO K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D NCTC12003_01087 cueR_1; Copper export regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D NCTC12003_03548 hmrR; Copper export regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D NCTC12003_03773 zntR; Zn(II)-responsive regulator of zntA K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D NCTC12003_00483 soxR; Redox-sensitive transcriptional activator soxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D NCTC12003_02765 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D NCTC12003_00445 zur; Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D NCTC12003_00434 iclR; Acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D NCTC12003_02534 kdgR_3; Transcriptional regulator kdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D NCTC12003_00362 crp_1; cAMP regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D NCTC12003_03456 crp_2; cAMP regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D NCTC12003_02117 fnr; Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D NCTC12003_01439 iscR; HTH-type transcriptional regulator iscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D NCTC12003_03672 nsrR; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D NCTC12003_01353 aseR; HTH-type transcriptional repressor AseR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D NCTC12003_03459 ybbH_4; Uncharacterized HTH-type transcriptional regulator ybbH K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D NCTC12003_00370 murR_2; MurPQ operon repressor K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D NCTC12003_02164 ybbH_2; Uncharacterized HTH-type transcriptional regulator ybbH K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D NCTC12003_03811 birA; Bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D NCTC12003_03265 fis; Hin recombinational enhancer-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D NCTC12003_00656 trpR; Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D NCTC12003_01325 prpR; Propionate catabolism operon regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D NCTC12003_03641 DNA-binding transcriptional regulator Nlp K07724 ner; Ner family transcriptional regulator D NCTC12003_01226 sgrR; HTH-type transcriptional regulator sgrR K11925 sgrR; SgrR family transcriptional regulator D NCTC12003_00651 nadR; Trifunctional NAD biosynthesis/regulator protein NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D NCTC12003_03327 transcriptional regulator, y4mF family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D NCTC12003_03959 hipB; Antitoxin HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D NCTC12003_00639 higA_1; Antitoxin HigA K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D NCTC12003_01141 fhlA; Formate hydrogenlyase transcriptional activator K12146 hyfR; hydrogenase-4 transcriptional activator D NCTC12003_00183 norR; Anaerobic nitric oxide reductase transcription regulator norR K12266 norR; anaerobic nitric oxide reductase transcription regulator D NCTC12003_03519 cdaR; Sugar diacid regulator K02647 cdaR; carbohydrate diacid regulator D NCTC12003_02907 modE; Transcriptional regulator modE K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families D NCTC12003_03840 metJ; Met regulon regulatory protein metJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D NCTC12003_02622 putA; Bifunctional protein putA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D NCTC12003_03687 relB; Antitoxin RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D NCTC12003_01332 frmR; Transcriptional repressor frmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D NCTC12003_00760 bolA; transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D NCTC12003_00586 rfaH; Transcriptional activator rfaH K05785 rfaH; transcriptional antiterminator RfaH D NCTC12003_03644 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D NCTC12003_02959 mlc_2; Making large colonies protein K02565 nagC; N-acetylglucosamine repressor D NCTC12003_03932 mlc_3; Making large colonies protein K02565 nagC; N-acetylglucosamine repressor D NCTC12003_01964 mlc_1; Making large colonies protein K15545 mlc; transcriptional regulator of PTS gene D NCTC12003_02264 tyrR; Transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D NCTC12003_01806 gcvR; Gcv operon repressor K03567 gcvR; glycine cleavage system transcriptional repressor D NCTC12003_00244 paaX; Phenylacetic acid degradation operon negative regulatory protein paaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D NCTC12003_02271 pspF; Phage shock protein F K03974 pspF; psp operon transcriptional activator D NCTC12003_02268 pspC; Phage shock protein C K03973 pspC; phage shock protein C D NCTC12003_03243 rnk; Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D NCTC12003_03360 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D NCTC12003_03364 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D NCTC12003_03565 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D NCTC12003_02704 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D NCTC12003_01378 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D NCTC12003_00140 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D NCTC12003_00867 yqgE; Uncharacterized ACR, COG1678 K07735 algH; putative transcriptional regulator D NCTC12003_00743 DNA-binding transcriptional activator CaiF K08277 caiF; transcriptional activator CaiF D NCTC12003_01040 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D NCTC12003_00726 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D NCTC12003_00896 crl; Curlin genes transcriptional activatory protein K11926 crl; sigma factor-binding protein Crl D NCTC12003_00522 nifA; Nif-specific regulatory protein K14414 rtcR; transcriptional regulatory protein RtcR D NCTC12003_01237 mraZ; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0