+D Transcription factors KO #

  Transcription Factors - Porphyrobacter sp. HT-58-2

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D CHX26_06345 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family D CHX26_12705 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CHX26_13050 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CHX26_08450 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D CHX26_08645 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator C DeoR family C LacI family D CHX26_06495 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CHX26_09410 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CHX26_12960 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D CHX26_04695 GntR family transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D CHX26_04790 GntR family transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor C TetR/AcrR family D CHX26_00255 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor C Lrp/AsnC family D CHX26_05445 AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D CHX26_06130 ArsR family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family C MarR family D CHX26_14395 hypothetical protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin C MerR family D CHX26_01855 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D CHX26_01965 transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D CHX26_14565 cobalamin B12-binding protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D CHX26_13040 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CHX26_02785 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D CHX26_05185 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D CHX26_06665 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CHX26_07930 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D CHX26_12910 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CHX26_12925 hypothetical protein K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D CHX26_10290 XRE family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D CHX26_11790 CopY family transcriptional repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CHX26_11375 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CHX26_00415 AsnC family transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D CHX26_08855 hypothetical protein K07726 K07726; putative transcriptional regulator D CHX26_09335 transcriptional regulator K07726 K07726; putative transcriptional regulator D CHX26_09690 transcriptional regulator K07726 K07726; putative transcriptional regulator D CHX26_00725 transcriptional regulator K07727 K07727; putative transcriptional regulator D CHX26_02655 transcriptional regulator K07729 K07729; putative transcriptional regulator D CHX26_06880 transcriptional regulator K07729 K07729; putative transcriptional regulator D CHX26_10760 transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D CHX26_13120 CopG family transcriptional regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D CHX26_03635 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D CHX26_07760 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D CHX26_02345 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CHX26_02905 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CHX26_08800 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CHX26_02300 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D CHX26_09015 hypothetical protein K05785 rfaH; transcriptional antiterminator RfaH D CHX26_10940 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D CHX26_14155 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D CHX26_08430 DNA-binding protein K07733 alpA; prophage regulatory protein D CHX26_09285 transcriptional regulator K07733 alpA; prophage regulatory protein D CHX26_14795 negative transcriptional regulator K07734 paiB; transcriptional regulator D CHX26_01325 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D CHX26_08530 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D CHX26_10575 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D CHX26_07000 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0