+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudoalteromonas issachenkonii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PI2015_3390 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PI2015_0922 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PI2015_3541 Putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PI2015_2486 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PI2015_0634 Adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PI2015_1867 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D PI2015_3430 S1/P1 Nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D PI2015_0276 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PI2015_2438 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PI2015_3390 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PI2015_0922 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PI2015_3541 Putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PI2015_1037 Deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E PI2015_2486 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PI2015_3389 Putative ADA regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PI2015_0634 Adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PI2015_2201 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PI2015_0493 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PI2015_1867 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PI2015_1323 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PI2015_2474 Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PI2015_1898 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PI2015_0264 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PI2015_0316 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E PI2015_3344 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E PI2015_1858 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E PI2015_1106 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E PI2015_0122 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PI2015_2019 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PI2015_0264 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PI2015_1898 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PI2015_0236 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PI2015_0237 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PI2015_2815 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PI2015_2779 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PI2015_1191 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PI2015_2305 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PI2015_2761 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E PI2015_2261 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E PI2015_1704 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PI2015_2349 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PI2015_0725 Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PI2015_2031 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PI2015_0002 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PI2015_0664 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PI2015_1947 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PI2015_1219 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PI2015_1068 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PI2015_1436 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PI2015_2003 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PI2015_2414 DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PI2015_1767 ATPase AAA K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PI2015_1898 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PI2015_0122 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PI2015_2019 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PI2015_0318 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PI2015_0306 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PI2015_1168 Exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PI2015_1167 Exonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PI2015_1169 Exonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PI2015_2303 Protein RecA K03553 recA; recombination protein RecA E PI2015_1148 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PI2015_1149 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PI2015_1147 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PI2015_0291 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PI2015_0646 Primosomal replication protein n K02686 priB; primosomal replication protein N E PI2015_1998 primosomal protein K04067 priC; primosomal replication protein N'' E PI2015_1704 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PI2015_3100 exonuclease SbcD K03546 sbcC; DNA repair protein SbcC/Rad50 E PI2015_1120 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E PI2015_3101 Exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PI2015_2303 Protein RecA K03553 recA; recombination protein RecA E PI2015_2333 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E PI2015_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E PI2015_2786 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PI2015_2474 Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PI2015_2271 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PI2015_1765 recombination protein RecR K06187 recR; recombination protein RecR E PI2015_1743 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PI2015_0707 Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E PI2015_1148 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PI2015_1149 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PI2015_1147 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PI2015_1991 ATP-dependent helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E PI2015_3100 exonuclease SbcD K03546 sbcC; DNA repair protein SbcC/Rad50 E PI2015_1120 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E PI2015_3101 Exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PI2015_1419 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PI2015_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PI2015_1333 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PI2015_1656 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F PI2015_2073 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F PI2015_3550 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PI2015_2474 Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PI2015_2271 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PI2015_1765 recombination protein RecR K06187 recR; recombination protein RecR F PI2015_1898 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PI2015_2679 DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PI2015_1113 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F PI2015_1424 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F PI2015_1704 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PI2015_2498 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PI2015_3181 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PI2015_0316 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F PI2015_3344 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F PI2015_1858 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PI2015_0699 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PI2015_3631 Component of DNA polymerase V with UmuD K03502 umuC; DNA polymerase V D PI2015_3632 Component of DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PI2015_2303 Protein RecA K03553 recA; recombination protein RecA D PI2015_2889 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PI2015_1743 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PI2015_1995 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PI2015_0318 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PI2015_0610 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PI2015_0260 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PI2015_1691 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D PI2015_1996 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PI2015_3589 ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D PI2015_0276 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PI2015_2438 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PI2015_1416 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PI2015_1415 Ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024