+F Repair protein KO
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DNA Repair and Recombination Proteins - Prevotella intermedia
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PIN17_A0941 DNA-binding protein, methylated-DNA-[protein]-cysteine S-methyltransferase family K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E PIN17_A0341 ung_1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PIN17_A0342 ung_2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PIN17_A1998 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PIN17_A1616 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D PIN17_A1375 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PIN17_A0751 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PIN17_A0941 DNA-binding protein, methylated-DNA-[protein]-cysteine S-methyltransferase family K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E PIN17_A0341 ung_1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PIN17_A0342 ung_2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PIN17_A1998 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PIN17_A1263 methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E PIN17_A1616 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E PIN17_A1904 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E PIN17_A1674 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E PIN17_A1373 NAD-dependent DNA ligase domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E PIN17_A0530 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E PIN17_A1743 uvrA_2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E PIN17_A1486 uvrA_1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E PIN17_A1504 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E PIN17_A0525 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E PIN17_0083 UvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PIN17_A0811 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PIN17_A0530 polA; DNA-directed DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7]
E PIN17_A1373 NAD-dependent DNA ligase domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F PIN17_A0965 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F PIN17_A0966 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F PIN17_A1003 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F PIN17_A1986 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E PIN17_A0541 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E PIN17_0268 Smr domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E PIN17_A0090 DNA mismatch repair protein, C-terminal domain protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E PIN17_A1337 putative exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E PIN17_A1338 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E PIN17_A1937 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E PIN17_0439 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E PIN17_A1151 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E PIN17_A1206 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E PIN17_0440 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PIN17_A2003 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PIN17_0136 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E PIN17_A1373 NAD-dependent DNA ligase domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E PIN17_0083 UvrD/REP helicase N-terminal domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PIN17_A0811 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PIN17_A1600 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E PIN17_A1860 dam_2; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E PIN17_0251 dam_1; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E PIN17_A0707 vsr; DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E PIN17_A1062 recA; RecA protein K03553 recA; recombination protein RecA
E PIN17_A1083 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PIN17_A0453 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PIN17_0305 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E PIN17_A0934 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E PIN17_A1062 recA; RecA protein K03553 recA; recombination protein RecA
E PIN17_0360 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E PIN17_A1308 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E PIN17_A0189 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E PIN17_A1674 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E PIN17_A0335 recO; recombination protein O, N-terminal / recombination protein O, C-terminal multi-domain protein K03584 recO; DNA repair protein RecO (recombination protein O)
E PIN17_A1532 recR; recombination protein RecR K06187 recR; recombination protein RecR
E PIN17_0443 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E PIN17_A1083 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PIN17_A0453 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PIN17_0305 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E PIN17_A0202 cas1; CRISPR-associated endonuclease Cas1, subtype II/NMENI K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F PIN17_A1257 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F PIN17_A0331 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F PIN17_A0447 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F PIN17_A0696 hup_4; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PIN17_A1403 putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F PIN17_0308 putative integration host factor subunit alpha K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F PIN17_A1674 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F PIN17_A0335 recO; recombination protein O, N-terminal / recombination protein O, C-terminal multi-domain protein K03584 recO; DNA repair protein RecO (recombination protein O)
F PIN17_A1532 recR; recombination protein RecR K06187 recR; recombination protein RecR
F PIN17_A1373 NAD-dependent DNA ligase domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F PIN17_A0096 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F PIN17_A1673 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F PIN17_A1743 uvrA_2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F PIN17_A1486 uvrA_1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F PIN17_A1504 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D PIN17_A1778 ImpB/MucB/SamB family protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D PIN17_A1062 recA; RecA protein K03553 recA; recombination protein RecA
D PIN17_0443 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PIN17_A1600 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PIN17_A0655 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D PIN17_A1375 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PIN17_A0751 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
D PIN17_0349 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024