+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Paenibacillus konkukensis

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SK3146_06600 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SK3146_06297 era; GTPase Era K03595 era; GTPase C SK3146_06055 obg; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SK3146_06674 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA C SK3146_01218 hypothetical protein K03625 nusB; transcription antitermination protein NusB C SK3146_02499 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG C SK3146_04234 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SK3146_01938 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D SK3146_04158 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SK3146_06548 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SK3146_04239 rlmG; Ribosomal RNA large subunit methyltransferase G K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D SK3146_06586 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SK3146_06270 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SK3146_03750 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SK3146_06343 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SK3146_04152 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D SK3146_01211 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D SK3146_05662 rlmA; 23S rRNA (guanine(745)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D SK3146_04229 Putative TrmH family tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SK3146_03797 rlmH_1; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SK3146_03819 rlmH_2; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SK3146_06273 rlmI_2; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D SK3146_01012 rlmI_1; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D SK3146_04364 rlmN_1; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SK3146_06549 rlmN_2; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SK3146_01211 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D SK3146_04616 rlmCD_2; 23S rRNA (uracil-C(5))-methyltransferase RlmCD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D SK3146_01125 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SK3146_05286 rluD_2; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SK3146_06030 rluD_3; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SK3146_06373 rluD_4; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SK3146_01013 rluD_1; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SK3146_04069 rluF; Ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C SK3146_04509 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SK3146_04086 Acetyltransferase (GNAT) family protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SK3146_04103 ydaF_1; Putative ribosomal N-acetyltransferase YdaF K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C SK3146_06607 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C SK3146_06706 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C SK3146_04413 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C SK3146_00190 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C SK3146_00228 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C SK3146_06268 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C SK3146_06600 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C SK3146_06050 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C SK3146_01696 yrrK; Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] C SK3146_04228 mrnC; Mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] B rRNA helicases C SK3146_01972 cshA_1; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C SK3146_03345 cshA_2; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C SK3146_06297 era; GTPase Era K03595 era; GTPase C SK3146_05842 rsgA_1; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C SK3146_06552 rsgA_2; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C SK3146_01098 der; GTPase Der K03977 engA; GTPase C SK3146_06055 obg; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C SK3146_06611 rbgA; Ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A C SK3146_00821 hflX; GTPase HflX K03665 hflX; GTPase C SK3146_06229 GTP-binding protein Der K06948 yqeH; 30S ribosome assembly GTPase B Other maturation factors C SK3146_03706 ywlC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SK3146_01723 relA_1; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SK3146_06678 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C SK3146_06673 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C SK3146_03742 hypothetical protein K14761 rlbA; ribosome-associated protein C SK3146_06234 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein C SK3146_06294 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor C SK3146_06231 yhbY; RNA-binding protein YhbY K07574 yhbY; RNA-binding protein C SK3146_03631 yvyD; Putative sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor C SK3146_03711 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase C SK3146_06591 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024