+E Ribosome biogenesis KO
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Ribosome Biogenesis - Paenibacillus konkukensis
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SK3146_06600 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SK3146_06297 era; GTPase Era K03595 era; GTPase
C SK3146_06055 obg; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SK3146_06674 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
C SK3146_01218 hypothetical protein K03625 nusB; transcription antitermination protein NusB
C SK3146_02499 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
C SK3146_04234 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SK3146_01938 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SK3146_04158 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SK3146_06548 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SK3146_04239 rlmG; Ribosomal RNA large subunit methyltransferase G K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SK3146_06586 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SK3146_06270 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SK3146_03750 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SK3146_06343 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SK3146_04152 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SK3146_01211 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D SK3146_05662 rlmA; 23S rRNA (guanine(745)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SK3146_04229 Putative TrmH family tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SK3146_03797 rlmH_1; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SK3146_03819 rlmH_2; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SK3146_06273 rlmI_2; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SK3146_01012 rlmI_1; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SK3146_04364 rlmN_1; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SK3146_06549 rlmN_2; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SK3146_01211 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SK3146_04616 rlmCD_2; 23S rRNA (uracil-C(5))-methyltransferase RlmCD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SK3146_01125 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SK3146_05286 rluD_2; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SK3146_06030 rluD_3; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SK3146_06373 rluD_4; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SK3146_01013 rluD_1; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SK3146_04069 rluF; Ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C SK3146_04509 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SK3146_04086 Acetyltransferase (GNAT) family protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SK3146_04103 ydaF_1; Putative ribosomal N-acetyltransferase YdaF K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C SK3146_06607 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C SK3146_06706 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C SK3146_04413 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C SK3146_00190 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C SK3146_00228 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C SK3146_06268 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SK3146_06600 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SK3146_06050 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C SK3146_01696 yrrK; Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C SK3146_04228 mrnC; Mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C SK3146_01972 cshA_1; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C SK3146_03345 cshA_2; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C SK3146_06297 era; GTPase Era K03595 era; GTPase
C SK3146_05842 rsgA_1; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SK3146_06552 rsgA_2; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SK3146_01098 der; GTPase Der K03977 engA; GTPase
C SK3146_06055 obg; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C SK3146_06611 rbgA; Ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
C SK3146_00821 hflX; GTPase HflX K03665 hflX; GTPase
C SK3146_06229 GTP-binding protein Der K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C SK3146_03706 ywlC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SK3146_01723 relA_1; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SK3146_06678 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SK3146_06673 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C SK3146_03742 hypothetical protein K14761 rlbA; ribosome-associated protein
C SK3146_06234 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C SK3146_06294 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
C SK3146_06231 yhbY; RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C SK3146_03631 yvyD; Putative sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C SK3146_03711 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C SK3146_06591 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024